From b438f52dbb7578c9a5c2153bc4ba50e33fdae7c3 Mon Sep 17 00:00:00 2001
From: Bryan Newbold <bnewbold@archive.org>
Date: Mon, 23 Sep 2019 22:58:55 -0700
Subject: start refactoring sandcrawler python common code

---
 python/sandcrawler/__init__.py |   3 +++
 python/sandcrawler/grobid.py   |  44 +++++++++++++++++++++++++++++++++++++++++
 python/sandcrawler/misc.py     |  43 ++++++++++++++++++++++++++++++++++++++++
 python/tests/files/dummy.pdf   | Bin 0 -> 13264 bytes
 python/tests/test_misc.py      |  41 ++++++++++++++++++++++++++++++++++++++
 5 files changed, 131 insertions(+)
 create mode 100644 python/sandcrawler/__init__.py
 create mode 100644 python/sandcrawler/grobid.py
 create mode 100644 python/sandcrawler/misc.py
 create mode 100644 python/tests/files/dummy.pdf
 create mode 100644 python/tests/test_misc.py

(limited to 'python')

diff --git a/python/sandcrawler/__init__.py b/python/sandcrawler/__init__.py
new file mode 100644
index 0000000..0120287
--- /dev/null
+++ b/python/sandcrawler/__init__.py
@@ -0,0 +1,3 @@
+
+from .grobid import GrobidClient
+from .misc import gen_file_metadata, b32_hex
diff --git a/python/sandcrawler/grobid.py b/python/sandcrawler/grobid.py
new file mode 100644
index 0000000..0e37c0e
--- /dev/null
+++ b/python/sandcrawler/grobid.py
@@ -0,0 +1,44 @@
+
+import requests
+
+class GrobidClient(object):
+
+    def __init__(self, host_uri, **kwargs):
+        self.host_uri = host_uri
+        self.consolidate_mode = int(kwargs.get('consolidate_mode', 1))
+
+    def process_fulltext(self, blob, consolidate_mode=None):
+        """
+        Returns dict with keys:
+            - status_code
+            - status (slug)
+            - error_msg (if status == 'error')
+            - tei_xml (if status is 200)
+
+        TODO: persist connection for performance?
+        """
+        assert blob
+
+        if consolidate_mode == None:
+            consolidate_mode = self.consolidate_mode
+
+        grobid_response = requests.post(
+            self.host_uri + "/api/processFulltextDocument",
+            files={
+                'input': blob,
+                'consolidate_mode': self.consolidate_mode,
+            }
+        )
+
+        info = dict(
+            status_code=grobid_response.status_code,
+        )
+        if grobid_response.status_code == 200:
+            info['status'] = 'success'
+            info['tei_xml'] = grobid_response.text
+        else:
+            # response.text is .content decoded as utf-8
+            info['status'] = 'error'
+            info['error_msg'] = grobid_response.text[:10000]
+        return info
+
diff --git a/python/sandcrawler/misc.py b/python/sandcrawler/misc.py
new file mode 100644
index 0000000..e13b5e7
--- /dev/null
+++ b/python/sandcrawler/misc.py
@@ -0,0 +1,43 @@
+
+import base64
+import magic
+import hashlib
+
+def gen_file_metadata(blob):
+    """
+    Takes a file blob (bytestream) and returns hashes and other metadata.
+
+    Returns a dict: size_bytes, md5hex, sha1hex, sha256hex, mimetype
+    """
+    assert blob
+    mimetype = magic.Magic(mime=True).from_buffer(blob)
+    hashes = [
+        hashlib.sha1(),
+        hashlib.sha256(),
+        hashlib.md5(),
+    ]
+    for h in hashes:
+        h.update(blob)
+    return dict(
+        size_bytes=len(blob),
+        sha1hex=hashes[0].hexdigest(),
+        sha256hex=hashes[1].hexdigest(),
+        md5hex=hashes[2].hexdigest(),
+        mimetype=mimetype,
+    )
+
+def b32_hex(s):
+    """
+    Converts a base32-encoded SHA-1 checksum into hex-encoded
+
+    base32 checksums are used by, eg, heritrix and in wayback CDX files
+    """
+    s = s.strip().split()[0].lower()
+    if s.startswith("sha1:"):
+        s = s[5:]
+    if len(s) != 32:
+        if len(s) == 40:
+            return s
+        raise ValueError("not a base-32 encoded SHA-1 hash: {}".format(s))
+    return base64.b16encode(base64.b32decode(s.upper())).lower().decode('utf-8')
+
diff --git a/python/tests/files/dummy.pdf b/python/tests/files/dummy.pdf
new file mode 100644
index 0000000..774c2ea
Binary files /dev/null and b/python/tests/files/dummy.pdf differ
diff --git a/python/tests/test_misc.py b/python/tests/test_misc.py
new file mode 100644
index 0000000..a7879c8
--- /dev/null
+++ b/python/tests/test_misc.py
@@ -0,0 +1,41 @@
+
+import pytest
+
+from sandcrawler import gen_file_metadata, b32_hex
+
+def test_gen_file_metadata():
+    
+    # valid (but very small) PDF file
+    with open('tests/files/dummy.pdf', 'rb') as f:
+        file_meta = gen_file_metadata(f.read())
+    assert file_meta == {
+        'mimetype': 'application/pdf',
+        'md5hex': '2942bfabb3d05332b66eb128e0842cff',
+        'sha1hex': '90ffd2359008d82298821d16b21778c5c39aec36',
+        'sha256hex': '3df79d34abbca99308e79cb94461c1893582604d68329a41fd4bec1885e6adb4',
+        'size_bytes': 13264,
+    }
+
+    # valid HTML
+    fm = gen_file_metadata(
+        b"""<html><head><title>dummy</title></head><body>html document</body></html>""")
+    assert fm['mimetype'] == 'text/html'
+
+    # bogus text
+    fm = gen_file_metadata(b"asdf1234")
+    assert fm['mimetype'] == 'text/plain'
+    assert fm['size_bytes'] == 8
+
+def test_b32_hex():
+
+    # valid b32
+    assert b32_hex('sha1:TZCYZ2ULEHYGESS4L3RNH75I23KKFSMC') == '9e458cea8b21f0624a5c5ee2d3ffa8d6d4a2c982'
+    assert b32_hex('TZCYZ2ULEHYGESS4L3RNH75I23KKFSMC') == '9e458cea8b21f0624a5c5ee2d3ffa8d6d4a2c982'
+
+    # sha1hex pass-through
+    s = 'bda3c1017d52e826bbd1da51efad877272d300f9'
+    assert b32_hex(s) == s
+
+    # invalid
+    with pytest.raises(ValueError):
+        assert b32_hex('blah') == 'blah'
-- 
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