From 1dad0d9e54bfae93eebea47f8a3cb291cdd645c5 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Wed, 4 Apr 2018 12:06:38 -0700 Subject: extraction -> mapreduce --- extraction/backfill_hbase_from_cdx.py | 195 ---------------------------------- 1 file changed, 195 deletions(-) delete mode 100755 extraction/backfill_hbase_from_cdx.py (limited to 'extraction/backfill_hbase_from_cdx.py') diff --git a/extraction/backfill_hbase_from_cdx.py b/extraction/backfill_hbase_from_cdx.py deleted file mode 100755 index fe37bd5..0000000 --- a/extraction/backfill_hbase_from_cdx.py +++ /dev/null @@ -1,195 +0,0 @@ -#!/usr/bin/env python3 -""" -Streaming Hadoop script to import CDX metadata into the HBase fulltext table, -primarily for URL-agnostic crawl de-duplication. Takes only "fulltext" file -formats. - -Requires: -- happybase -- mrjob - -TODO: -- argparse -- refactor into an object -- tests in separate file -- nose tests -- sentry integration for error reporting -""" - -import sys -import json -from datetime import datetime -import happybase -import mrjob -from mrjob.job import MRJob - -NORMAL_MIME = ( - 'application/pdf', - 'application/postscript', - 'text/html', - 'text/xml', -) - -def normalize_mime(raw): - raw = raw.lower() - for norm in NORMAL_MIME: - if raw.startswith(norm): - return norm - - # Special cases - if raw.startswith('application/xml'): - return 'text/xml' - if raw.startswith('application/x-pdf'): - return 'application/pdf' - return None - -def test_normalize_mime(): - assert normalize_mime("asdf") == None - assert normalize_mime("application/pdf") == "application/pdf" - assert normalize_mime("application/pdf+journal") == "application/pdf" - assert normalize_mime("Application/PDF") == "application/pdf" - assert normalize_mime("application/p") == None - assert normalize_mime("application/xml+stuff") == "text/xml" - -def transform_line(raw_cdx): - - cdx = raw_cdx.split() - if len(cdx) < 11: - return None - - surt = cdx[0] - dt = cdx[1] - url = cdx[2] - mime = normalize_mime(cdx[3]) - http_status = cdx[4] - key = cdx[5] - c_size = cdx[8] - offset = cdx[9] - warc = cdx[10] - - if not (key.isalnum() and c_size.isdigit() and offset.isdigit() - and http_status == "200" and len(key) == 32 and dt.isdigit()): - return None - - if '-' in (surt, dt, url, mime, http_status, key, c_size, offset, warc): - return None - - key = "sha1:{}".format(key) - - info = dict(surt=surt, dt=dt, url=url, c_size=int(c_size), - offset=int(offset), warc=warc) - - warc_file = warc.split('/')[-1] - dt_iso = datetime.strptime(dt, "%Y%m%d%H%M%S").isoformat() - try: - dt_iso = datetime.strptime(dt, "%Y%m%d%H%M%S").isoformat() - except: - return None - - # 'i' intentionally not set - heritrix = dict(u=url, d=dt_iso, f=warc_file, o=int(offset), c=1) - return {'key': key, 'file:mime': mime, 'file:cdx': info, 'f:c': heritrix} - -def test_transform_line(): - - raw = "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf 20170828233154 https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf application/pdf 200 WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G - - 210251 931661233 SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz" - correct = { - 'key': "sha1:WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G", - 'file:mime': "application/pdf", - 'file:cdx': { - 'surt': "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf", - 'url': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf", - 'dt': "20170828233154", - 'warc': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz", - 'offset': 931661233, - 'c_size': 210251, - }, - 'f:c': { - 'u': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf", - 'd': "2017-08-28T23:31:54", - 'f': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz", - 'o': 931661233, - 'c': 1, - } - } - - assert transform_line(raw) == correct - assert transform_line(raw + "\n") == correct - assert transform_line(raw + " extra_field") == correct - - -class MRCDXBackfillHBase(MRJob): - - # CDX lines in; JSON status out - INPUT_PROTOCOL = mrjob.protocol.RawValueProtocol - OUTPUT_PROTOCOL = mrjob.protocol.JSONValueProtocol - - def configure_args(self): - super(MRCDXBackfillHBase, self).configure_args() - - self.add_passthru_arg('--hbase-table', - type=str, - default='wbgrp-journal-extract-0-qa', - help='HBase table to backfill into (must exist)') - self.add_passthru_arg('--hbase-host', - type=str, - default='localhost', - help='HBase thrift API host to connect to') - - def __init__(self, *args, **kwargs): - - # Allow passthrough for tests - if 'hb_table' in kwargs: - self.hb_table = kwargs.pop('hb_table') - else: - self.hb_table = None - - super(MRCDXBackfillHBase, self).__init__(*args, **kwargs) - self.mime_filter = ['application/pdf'] - - def mapper_init(self): - - if self.hb_table is None: - try: - host = self.options.hbase_host - # TODO: make these configs accessible from... mrconf.cfg? - hb_conn = happybase.Connection(host=host, transport="framed", - protocol="compact") - except Exception as err: - raise Exception("Couldn't connect to HBase using host: {}".format(host)) - self.hb_table = hb_conn.table(self.options.hbase_table) - - def mapper(self, _, raw_cdx): - - self.increment_counter('lines', 'total') - - if (raw_cdx.startswith(' ') or raw_cdx.startswith('filedesc') or - raw_cdx.startswith('#')): - - # Skip line - # XXX: tests don't cover this path; need coverage! - self.increment_counter('lines', 'invalid') - return _, dict(status="invalid") - - info = transform_line(raw_cdx) - if info is None: - self.increment_counter('lines', 'invalid') - return _, dict(status="invalid") - - if info['file:mime'] not in self.mime_filter: - self.increment_counter('lines', 'skip') - return _, dict(status="skip") - - key = info.pop('key') - info['f:c'] = json.dumps(info['f:c'], sort_keys=True, indent=None) - info['file:cdx'] = json.dumps(info['file:cdx'], sort_keys=True, - indent=None) - - self.hb_table.put(key, info) - self.increment_counter('lines', 'success') - - yield _, dict(status="success") - -if __name__ == '__main__': - MRCDXBackfillHBase.run() - -- cgit v1.2.3