From f89906a442977a48f99bbb8b52ba7c60ec366c89 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Wed, 4 Sep 2019 14:35:12 -0700 Subject: add filter_groupworks.py For use with new release grouping/matching jobs. --- python/filter_groupworks.py | 144 ++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 144 insertions(+) create mode 100755 python/filter_groupworks.py diff --git a/python/filter_groupworks.py b/python/filter_groupworks.py new file mode 100755 index 0000000..bbba770 --- /dev/null +++ b/python/filter_groupworks.py @@ -0,0 +1,144 @@ +#!/usr/bin/env python3 +""" +Filters an input stream of sorted "groupworks" scalding job, and outputs +"good enough" matches to be merged in fatcat. + +Output is JSON lines which are arrays of releases that could/should be merged +together, either as multiple releases under a single work, or releases merged +into a single entity (via redirects). + +Note that releases *should* only end up on a single line, and only once per +line! + +No dependencies (only python3 stdlib) + +Note: the actual importer/merger should filter the following patterns out: +- container title has "letter" and "diar" +- contribs (authors) contain "&NA;" +- dates differ (not just year) +""" + +import sys +import json + +# out of 1000 +SCORE_THRESHOLD = 900 + +MAX_SLUG_LINES = 50 + +REQUIRE_AUTHORS = False + +def tokenize(s, remove_whitespace=False): + + s.replace(''', "'") + # Remove non-alphanumeric characters + s = ''.join([c for c in s.lower() if c.isalnum() or c.isspace()]) + + if remove_whitespace: + s = ''.join(s.split()) + + # Encode as dumb ASCII (TODO: this is horrible) + return s.encode('ascii', 'replace').replace(b'?', b'') + +def check_authors(left, right): + """ + Intended to check GROBID extracted authors (right) against "known good" + (but maybe not perfect) Crossref metadata authors ("left"). + """ + if not left and not right: + return bool(not REQUIRE_AUTHORS) + if len(left) != len(right): + return False + right_all = tokenize(" ".join(right)) + for i in range(len(left)): + l = left[i].lower().replace('jr.', '').split() + if not l: + return False + l = tokenize(l[-1]) + if len(l) <= 1: + # weird author name (single char) + return False + if l not in right_all: + #print("MISSING: {} from {}".format(l.decode('utf8'), right_all.decode('utf8'))) + return False + return True + +def test_check_authors(): + assert check_authors([], []) == bool(not REQUIRE_AUTHORS) + assert not check_authors([], ['one']) + assert check_authors(['one'], ['one']) + assert check_authors(['one two'], ['One Two']) + assert check_authors(['two'], ['One Two']) + assert check_authors(['two'], ['two, one']) + assert check_authors(['mago'], ['Mr. Magoo']) + assert check_authors(['Mr. Magoo'], ['Mr Magoo']) + assert check_authors(['one', 'tw', 'thr'], ['one', 'two', 'three']) + +# Rows are (score, left, right) +def process_group(rows): + + # first pass reduces size of list and generates a linkage graph + filtered = list() + for row in rows: + score = int(row[0]) + if score < SCORE_THRESHOLD: + continue + left = json.loads(row[1]) + right = json.loads(row[2]) + # authors must roughly match + if not check_authors(left['authors'], right['authors']): + continue + # years must match (if defined) + if left['year'] and right['year'] and left['year'] != right['year']: + continue + filtered.append((left, right)) + + if not filtered: + return + + # second pass finds a connected graph and returns that + releases = dict() + group_ids = set() + for row in filtered[1:]: + (left, right) = row + l_id = left['fatcat_release'] + r_id = right['fatcat_release'] + releases[l_id] = left + releases[r_id] = right + if not group_ids: + group_ids.add(l_id) + group_ids.add(r_id) + continue + if l_id in group_ids or r_id in group_ids: + group_ids.add(l_id) + group_ids.add(r_id) + continue + + if not group_ids: + return + + print(json.dumps([releases[ident] for ident in group_ids])) + +def run(): + + last_slug = None + lines = [] + + # group lines by slug, and process in batches + for line in sys.stdin: + line = line.strip().split('\t') + assert len(line) == 4 + slug = line[0] + if last_slug and slug != last_slug and lines: + if len(lines) <= MAX_SLUG_LINES: + process_group(lines) + lines = [] + last_slug = slug + lines.append(line[1:]) + + # catch any remaining + if lines: + process_group(lines) + +if __name__=='__main__': + run() -- cgit v1.2.3