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* filter out very large GROBID XML bodiesBryan Newbold2019-12-011-0/+6
| | | | | | | | | | This is to prevent Kafka MSG_SIZE_TOO_LARGE publish errors. We should probably bump this in the future. Open problems: hand-coding this size number isn't good, need to update in two places. Shouldn't filter out for non-Kafka sinks. Might still exist a corner-case where JSON encoded XML is larger than XML character string, due to encoding (eg, for unicode characters).
* CI: make some jobs manualBryan Newbold2019-11-151-0/+2
| | | | | Scalding test is broken :( But we aren't even using that code much these days.
* handle wayback fetch redirect loop in ingest codeBryan Newbold2019-11-141-2/+5
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* bump kafka max poll interval for consumersBryan Newbold2019-11-141-2/+2
| | | | | The ingest worker keeps timing out at just over 5 minutes, so bump it just a bit.
* handle WaybackError during ingestBryan Newbold2019-11-141-0/+4
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* handle SPNv1 redirect loopBryan Newbold2019-11-141-0/+2
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* handle SPNv2 polling timeoutBryan Newbold2019-11-141-6/+10
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* update ingest-file batch size to 1Bryan Newbold2019-11-142-4/+4
| | | | | | | | Was defaulting to 100, which I think was resulting in lots of consumer group timeouts, resulting in UNKNOWN_MEMBER_ID errors. Will probably switch back to batches of 10 or so, but multi-processing or some other concurrent dispatch/processing.
* start of hrmars.com ingest supportBryan Newbold2019-11-142-2/+7
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* treat failure to get terminal capture as a SavePageNowErrorBryan Newbold2019-11-131-1/+1
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* citation_pdf_url with host-relative URLsBryan Newbold2019-11-131-1/+3
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* status_forcelist is on session, not requestBryan Newbold2019-11-131-2/+2
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* handle SPNv1 remote server HTTP status codes betterBryan Newbold2019-11-131-8/+15
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* grobid2json: make lang detection flexibleBryan Newbold2019-11-131-1/+2
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* handle requests (http) redirect loop from waybackBryan Newbold2019-11-131-1/+4
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* handle wayback client return status correctlyBryan Newbold2019-11-131-2/+2
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* allow way more errors in SPN pathBryan Newbold2019-11-131-2/+11
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* clean up redirect-following CDX API pathBryan Newbold2019-11-131-8/+15
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* fix lint errorsBryan Newbold2019-11-132-6/+11
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* improve ingest worker remote failure behaviorBryan Newbold2019-11-131-5/+12
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* have SPN client differentiate between SPN and remote errorsBryan Newbold2019-11-132-3/+11
| | | | | | | | This is only a partial implementation. The requests client will still make way too many SPN requests trying to figure out if this is a real error or not (eg, if remote was a 502, we'll retry many times). We may just want to switch to SPNv2 for everything.
* correct ingest-file consumer groupBryan Newbold2019-11-131-1/+1
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* add basic sandcrawler worker (kafka)Bryan Newbold2019-11-131-0/+74
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* note that kafka_grobid.py is deprecatedBryan Newbold2019-11-131-0/+3
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* rename FileIngestWorkerBryan Newbold2019-11-133-10/+16
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* refactor consume_topic name out of make_kafka_consumer()Bryan Newbold2019-11-131-5/+5
| | | | Best to do this in wrapping code for full flexibility.
* more progress on file ingestBryan Newbold2019-11-134-17/+75
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* much progress on file ingest pathBryan Newbold2019-10-226-335/+338
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* remove spurious debug print from grobid2jsonBryan Newbold2019-10-221-1/+1
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* we do actually want consolidateHeader=2, not 1Bryan Newbold2019-10-042-4/+4
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* remove any trailing newlineBryan Newbold2019-10-041-2/+2
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* grobid: consolidateHeaders typoBryan Newbold2019-10-041-1/+1
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* grobid_tool: don't wrap multiprocess if we don't need toBryan Newbold2019-10-041-2/+4
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* disable citation consolidation by defaultBryan Newbold2019-10-041-1/+1
| | | | | | | with this consolidation enabled, the glutton_fatcat elasticsearch server was totally pegged over 90% CPU with only 10 PDF worker threads; the glutton load seemed to be the bottleneck even for this low degree of parallelism. Disabled for now, will debug with GROBID/glutton folks.
* grobid-output-pg, not grobid-output-jsonBryan Newbold2019-10-041-4/+2
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* grobid_tool: don't always insert multi wrapperBryan Newbold2019-10-041-6/+13
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* grobid2json: language_codeBryan Newbold2019-10-042-1/+7
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* fix GROBID POST flagsBryan Newbold2019-10-041-1/+3
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* workers: better generic batch-size arg handlingBryan Newbold2019-10-031-0/+6
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* handle GROBID fetch empty blob conditionBryan Newbold2019-10-031-1/+2
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* grobid_affiliations fix from prod, and usage exampleBryan Newbold2019-10-021-0/+5
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* deliver_dumpgrobid_to_s3: typo fix from old prodBryan Newbold2019-10-021-3/+4
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* grobid affiliation extractor (script)Bryan Newbold2019-10-021-0/+47
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* python tests for pusher classesBryan Newbold2019-10-022-0/+28
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* have grobidworker error status indicate issues instead of bailingBryan Newbold2019-10-021-4/+13
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* grobid_tool.py example usage in docstringBryan Newbold2019-10-021-0/+6
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* add tests for affiliation extractionBryan Newbold2019-10-022-1/+25
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* have grobid2json extract full names and affiliationsBryan Newbold2019-10-021-5/+27
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* more counts and bugfixes in grobid_toolBryan Newbold2019-09-263-5/+7
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* off-by-one error in batch sizesBryan Newbold2019-09-261-1/+1
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