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* have SPN client differentiate between SPN and remote errorsBryan Newbold2019-11-132-3/+11
| | | | | | | | This is only a partial implementation. The requests client will still make way too many SPN requests trying to figure out if this is a real error or not (eg, if remote was a 502, we'll retry many times). We may just want to switch to SPNv2 for everything.
* correct ingest-file consumer groupBryan Newbold2019-11-131-1/+1
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* new kafka topics for file ingestBryan Newbold2019-11-131-0/+15
| | | | Created these for 'qa' and 'prod'
* ingest/backfill notesBryan Newbold2019-11-133-0/+47
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* notes about running 'regrobid' batches manually (not kafka)Bryan Newbold2019-11-131-0/+41
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* commit old notes about munging GROBID outputBryan Newbold2019-11-131-0/+70
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* add structure of ingest proposalBryan Newbold2019-11-131-0/+129
| | | | Still needs some details flushed out
* add basic sandcrawler worker (kafka)Bryan Newbold2019-11-131-0/+74
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* note that kafka_grobid.py is deprecatedBryan Newbold2019-11-131-0/+3
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* rename FileIngestWorkerBryan Newbold2019-11-133-10/+16
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* refactor consume_topic name out of make_kafka_consumer()Bryan Newbold2019-11-131-5/+5
| | | | Best to do this in wrapping code for full flexibility.
* more progress on file ingestBryan Newbold2019-11-134-17/+75
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* add note to CDX backfill script that we should be filtering (oops)Bryan Newbold2019-11-121-0/+1
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* SQL stats and commands (mostly from sept 2019)Bryan Newbold2019-11-124-0/+96
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* much progress on file ingest pathBryan Newbold2019-10-226-335/+338
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* remove spurious debug print from grobid2jsonBryan Newbold2019-10-221-1/+1
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* new/additional GWB CDX filter scriptsBryan Newbold2019-10-177-0/+142
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* we do actually want consolidateHeader=2, not 1Bryan Newbold2019-10-042-4/+4
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* remove any trailing newlineBryan Newbold2019-10-041-2/+2
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* grobid: consolidateHeaders typoBryan Newbold2019-10-041-1/+1
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* grobid_tool: don't wrap multiprocess if we don't need toBryan Newbold2019-10-041-2/+4
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* disable citation consolidation by defaultBryan Newbold2019-10-041-1/+1
| | | | | | | with this consolidation enabled, the glutton_fatcat elasticsearch server was totally pegged over 90% CPU with only 10 PDF worker threads; the glutton load seemed to be the bottleneck even for this low degree of parallelism. Disabled for now, will debug with GROBID/glutton folks.
* grobid-output-pg, not grobid-output-jsonBryan Newbold2019-10-041-4/+2
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* grobid_tool: don't always insert multi wrapperBryan Newbold2019-10-041-6/+13
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* grobid2json: language_codeBryan Newbold2019-10-042-1/+7
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* fix GROBID POST flagsBryan Newbold2019-10-041-1/+3
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* workers: better generic batch-size arg handlingBryan Newbold2019-10-031-0/+6
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* handle GROBID fetch empty blob conditionBryan Newbold2019-10-031-1/+2
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* update kafka topic listingsBryan Newbold2019-10-031-21/+35
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* grobid_affiliations fix from prod, and usage exampleBryan Newbold2019-10-021-0/+5
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* deliver_dumpgrobid_to_s3: typo fix from old prodBryan Newbold2019-10-021-3/+4
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* grobid affiliation extractor (script)Bryan Newbold2019-10-021-0/+47
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* python tests for pusher classesBryan Newbold2019-10-022-0/+28
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* have grobidworker error status indicate issues instead of bailingBryan Newbold2019-10-021-4/+13
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* grobid_tool.py example usage in docstringBryan Newbold2019-10-021-0/+6
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* add tests for affiliation extractionBryan Newbold2019-10-022-1/+25
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* have grobid2json extract full names and affiliationsBryan Newbold2019-10-021-5/+27
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* more counts and bugfixes in grobid_toolBryan Newbold2019-09-263-5/+7
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* off-by-one error in batch sizesBryan Newbold2019-09-261-1/+1
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* small improvements to GROBID toolBryan Newbold2019-09-262-2/+10
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* lots of grobid tool implementation (still WIP)Bryan Newbold2019-09-268-16/+748
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* gitlab CI: run both python and python_hadoop testsBryan Newbold2019-09-251-1/+6
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* pylint as part of pytest; update lint configBryan Newbold2019-09-252-1/+17
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* pipfile updateBryan Newbold2019-09-252-241/+70
| | | | | | | - remove hadoop stuff (mrjob, happybase, etc) - add flask - add pytest-pylint plugin - reformat (automatic by newer pipenv)
* test of GROBID clientBryan Newbold2019-09-251-0/+53
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* move a bunch of random old scripts to subdirBryan Newbold2019-09-259-0/+0
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* get rid of old xml2jsonBryan Newbold2019-09-251-7/+0
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* update README with new foldersBryan Newbold2019-09-251-4/+10
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* point 'please' to python_hadoopBryan Newbold2019-09-251-4/+4
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* refactor old python hadoop code into new directoryBryan Newbold2019-09-2521-0/+3523
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