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* ingest: fix postgrest lookup bug (double get of GROBID)Bryan Newbold2021-07-261-1/+1
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* reingest: skip spn2 'unknown' errorsBryan Newbold2021-07-212-0/+2
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* more blocked-cookie patterns; fix old typoBryan Newbold2021-07-141-2/+2
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* unpaywall 2021-07 crawl partial notesBryan Newbold2021-07-141-0/+224
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* CI: wget used in pig CI scriptsBryan Newbold2021-07-131-1/+1
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* CI: new sbt debian repositoryBryan Newbold2021-07-131-4/+3
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* Revert "CI: sbt bintray is gone, but ubuntu focal version should work"Bryan Newbold2021-07-131-0/+5
| | | | This reverts commit 9aebb88aac2b620e15756b4e1531989d9d32cd43.
* CI: sbt bintray is gone, but ubuntu focal version should workBryan Newbold2021-07-131-5/+0
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* another bad PDF sha1Bryan Newbold2021-07-131-0/+1
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* crawl: SPN2 non-200 success code pathBryan Newbold2021-07-131-11/+25
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* crawl: SPN self-redirect hackBryan Newbold2021-07-131-0/+9
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* crawl: small comment updatesBryan Newbold2021-07-131-3/+6
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* another lowercase DOI in an (unused?) scriptBryan Newbold2021-07-131-1/+1
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* gitignore: samples/Bryan Newbold2021-07-131-0/+1
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* add crossref postgrest fetch support to python db helpersBryan Newbold2021-06-021-0/+9
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* crossref DB proposal, and include in SQL schemaBryan Newbold2021-06-022-0/+93
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* notes on large-domain ingest tweaksBryan Newbold2021-05-271-0/+480
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* 2021-04 unpaywall crawl notesBryan Newbold2021-05-271-0/+368
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* python Makefile: fix test/*.py linting with newer pylintBryan Newbold2021-05-241-1/+1
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* ingest: fix html PDF extraction exception catch behaviorBryan Newbold2021-05-241-3/+2
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* ingest PDF extraction updatesBryan Newbold2021-05-213-2/+74
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* better OSF preprint download re-writingBryan Newbold2021-05-211-6/+23
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* html ingest: remove whitespace around relative URLs (eg, for d-lib)Bryan Newbold2021-05-211-1/+1
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* add cdx_collection.py python script (from scratch repo)Bryan Newbold2021-05-041-0/+80
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* sql: do periodically retry spn2-wayback-errorBryan Newbold2021-04-272-2/+0
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* ingest: cap max body size to ~128 MByteBryan Newbold2021-04-271-0/+6
| | | | Should resolve 'magic' OOM errors in production.
* persist: skip very long URLsBryan Newbold2021-04-121-0/+4
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* reingest scripts to run as sandcrawlerBryan Newbold2021-04-092-12/+12
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* sql: notes on sql restoreBryan Newbold2021-04-091-0/+9
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* sql: update paths to work with svc506 machineBryan Newbold2021-04-0912-49/+49
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* sql: before/after pg13 table size statsBryan Newbold2021-04-092-1/+43
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* sql: update periodic retry/reingest scriptsBryan Newbold2021-04-094-6/+14
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* update default postgrest ('db') API endpointBryan Newbold2021-04-091-1/+1
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* SQL snapshot doc updateBryan Newbold2021-04-071-2/+5
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* gitlab CI: make python_hadoop tests manualBryan Newbold2021-04-071-0/+1
| | | | | | These require python3.5, which isn't the system version for focal. Will need to run these jobs on machines compatible with the hadoop cluster (eg, running xenial)
* gitlab-ci: gpg-agentBryan Newbold2021-04-071-1/+1
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* gitlab CI: switch to ubuntu:focalBryan Newbold2021-04-071-14/+10
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* 2021-04-07 sandcrawler DB statsBryan Newbold2021-04-071-0/+428
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* grobid: disable biblio-glutton consolidationBryan Newbold2021-04-071-3/+3
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* ingest: handle current degruyter PDF link patternBryan Newbold2021-03-261-0/+8
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* add missing dotfiles (due to gitignore oops)Bryan Newbold2021-01-182-0/+12
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* pipenv: lock minio S3 library to <7.0.0Bryan Newbold2021-01-142-242/+196
| | | | | | | | | | | In this upstream commit: https://github.com/minio/minio-py/commit/b81883a98e6f8a09e2903609caabbf0956dd0ec9 The API for errors changes, which makes it harder for use to catch specific exceptions (such as "NoSuchKey" as a Not Found / 404 error). Instead of refactoring, just going to pin the library. We should probably remove this library for a non-implementation-specific S3 client at some point; minio seems simpler than, eg, boto3, but there is probably something ever simpler out there.
* more expansive python/.gitignore rules (all .gz)Bryan Newbold2021-01-051-1/+1
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* doaj ingest request updates (from prod)Bryan Newbold2021-01-051-1/+5
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* gitlab CI: update kitware (updated cmake on xenial) signing keyBryan Newbold2021-01-051-2/+2
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* gitlab CI: add libmagic1 dep (was a recommends)Bryan Newbold2021-01-051-1/+1
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* gitlab CI: add build depsBryan Newbold2021-01-051-1/+1
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* gitlab CI: install fewer packages (no recommends)Bryan Newbold2021-01-051-2/+2
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* python makefile: don't duplicate 'lint' commands during 'test'Bryan Newbold2021-01-051-2/+0
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* update to python3.8Bryan Newbold2021-01-054-403/+417
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