diff options
Diffstat (limited to 'python/grobid_tool.py')
-rwxr-xr-x | python/grobid_tool.py | 92 |
1 files changed, 51 insertions, 41 deletions
diff --git a/python/grobid_tool.py b/python/grobid_tool.py index c36fe0a..f85d243 100755 --- a/python/grobid_tool.py +++ b/python/grobid_tool.py @@ -39,7 +39,7 @@ def run_extract_cdx(args): multi_worker, args.cdx_file, filter_http_statuses=[200, 226], - filter_mimetypes=['application/pdf'], + filter_mimetypes=["application/pdf"], batch_size=args.jobs, ) else: @@ -48,7 +48,7 @@ def run_extract_cdx(args): worker, args.cdx_file, filter_http_statuses=[200, 226], - filter_mimetypes=['application/pdf'], + filter_mimetypes=["application/pdf"], ) pusher.run() @@ -75,64 +75,74 @@ def run_transform(args): if args.metadata_only: out = grobid_client.metadata(line) else: - out = teixml2json(line['tei_xml']) + out = teixml2json(line["tei_xml"]) if out: - if 'source' in line: - out['source'] = line['source'] + if "source" in line: + out["source"] = line["source"] print(json.dumps(out)) def main(): parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) - parser.add_argument('--kafka-mode', - action='store_true', - help="send output to Kafka (not stdout)") - parser.add_argument('--kafka-hosts', - default="localhost:9092", - help="list of Kafka brokers (host/port) to use") - parser.add_argument('--kafka-env', - default="dev", - help="Kafka topic namespace to use (eg, prod, qa, dev)") - parser.add_argument('-j', - '--jobs', - default=8, - type=int, - help="parallelism for batch CPU jobs") - parser.add_argument('--grobid-host', - default="http://grobid.qa.fatcat.wiki", - help="GROBID API host/port") + parser.add_argument( + "--kafka-mode", action="store_true", help="send output to Kafka (not stdout)" + ) + parser.add_argument( + "--kafka-hosts", + default="localhost:9092", + help="list of Kafka brokers (host/port) to use", + ) + parser.add_argument( + "--kafka-env", default="dev", help="Kafka topic namespace to use (eg, prod, qa, dev)" + ) + parser.add_argument( + "-j", "--jobs", default=8, type=int, help="parallelism for batch CPU jobs" + ) + parser.add_argument( + "--grobid-host", default="http://grobid.qa.fatcat.wiki", help="GROBID API host/port" + ) subparsers = parser.add_subparsers() sub_extract_json = subparsers.add_parser( - 'extract-json', - help="for each JSON line with CDX info, fetches PDF and does GROBID extraction") + "extract-json", + help="for each JSON line with CDX info, fetches PDF and does GROBID extraction", + ) sub_extract_json.set_defaults(func=run_extract_json) - sub_extract_json.add_argument('json_file', - help="JSON file to import from (or '-' for stdin)", - type=argparse.FileType('r')) + sub_extract_json.add_argument( + "json_file", + help="JSON file to import from (or '-' for stdin)", + type=argparse.FileType("r"), + ) sub_extract_cdx = subparsers.add_parser( - 'extract-cdx', help="for each CDX line, fetches PDF and does GROBID extraction") + "extract-cdx", help="for each CDX line, fetches PDF and does GROBID extraction" + ) sub_extract_cdx.set_defaults(func=run_extract_cdx) - sub_extract_cdx.add_argument('cdx_file', - help="CDX file to import from (or '-' for stdin)", - type=argparse.FileType('r')) + sub_extract_cdx.add_argument( + "cdx_file", + help="CDX file to import from (or '-' for stdin)", + type=argparse.FileType("r"), + ) sub_extract_zipfile = subparsers.add_parser( - 'extract-zipfile', - help="opens zipfile, iterates over PDF files inside and does GROBID extract for each") + "extract-zipfile", + help="opens zipfile, iterates over PDF files inside and does GROBID extract for each", + ) sub_extract_zipfile.set_defaults(func=run_extract_zipfile) - sub_extract_zipfile.add_argument('zip_file', help="zipfile with PDFs to extract", type=str) + sub_extract_zipfile.add_argument("zip_file", help="zipfile with PDFs to extract", type=str) - sub_transform = subparsers.add_parser('transform') + sub_transform = subparsers.add_parser("transform") sub_transform.set_defaults(func=run_transform) - sub_transform.add_argument('--metadata-only', - action='store_true', - help="Only pass through bibliographic metadata, not fulltext") sub_transform.add_argument( - 'json_file', + "--metadata-only", + action="store_true", + help="Only pass through bibliographic metadata, not fulltext", + ) + sub_transform.add_argument( + "json_file", help="convert TEI-XML to JSON. Input is JSON lines with tei_xml field", - type=argparse.FileType('r')) + type=argparse.FileType("r"), + ) args = parser.parse_args() if not args.__dict__.get("func"): @@ -148,5 +158,5 @@ def main(): args.func(args) -if __name__ == '__main__': +if __name__ == "__main__": main() |