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-rw-r--r--extraction/tests/test_extraction_cdx_grobid.py169
1 files changed, 0 insertions, 169 deletions
diff --git a/extraction/tests/test_extraction_cdx_grobid.py b/extraction/tests/test_extraction_cdx_grobid.py
deleted file mode 100644
index 71b55a3..0000000
--- a/extraction/tests/test_extraction_cdx_grobid.py
+++ /dev/null
@@ -1,169 +0,0 @@
-
-import io
-import json
-import pytest
-import mrjob
-import responses
-import happybase_mock
-from extraction_cdx_grobid import MRExtractCDXGROBID
-
-
-
-def test_parse_cdx_line():
-
- raw = "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf 20170828233154 https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf application/pdf 200 WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G - - 210251 931661233 SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz"
- correct = {
- 'key': "sha1:WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G",
- 'file:mime': "application/pdf",
- 'file:cdx': {
- 'surt': "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'url': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'dt': "20170828233154",
- 'warc': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
- 'offset': 931661233,
- 'c_size': 210251,
- },
- 'f:c': {
- 'u': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'd': "2017-08-28T23:31:54",
- 'f': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
- 'o': 931661233,
- 'c': 1,
- }
- }
-
- assert transform_line(raw) == correct
- assert transform_line(raw + "\n") == correct
- assert transform_line(raw + " extra_field") == correct
-
-@pytest.fixture
-def job():
- """
- Note: this mock only seems to work with job.run_mapper(), not job.run();
- the later results in a separate instantiation without the mock?
- """
- conn = happybase_mock.Connection()
- conn.create_table('wbgrp-journal-extract-test',
- {'file': {}, 'grobid0': {}, 'f': {}})
- table = conn.table('wbgrp-journal-extract-test')
-
- job = MRCDXBackfillHBase(['--no-conf', '-'], hb_table=table)
- return job
-
-
-@responses.activate
-def test_mapper_lines(job):
-
- fake_grobid = {}
- responses.add(responses.POST, 'http://localhost:9070/api/processFulltextDocument', status=200,
- body=json.dumps(fake_grobid), content_type='application/json')
-
- raw = io.BytesIO(b"""
-com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 301 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-eu,eui,cadmus)/bitstream/handle/1814/36635/rscas_2015_03.pdf;jsessionid=761393014319a39f40d32ae3eb3a853f?sequence=1 20170705062202 http://cadmus.eui.eu/bitstream/handle/1814/36635/RSCAS_2015_03.pdf%3Bjsessionid%3D761393014319A39F40D32AE3EB3A853F?sequence%3D1 application/PDF 200 MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J - - 854156 328850624 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-com,pbworks,educ333b)/robots.txt 20170705063311 http://educ333b.pbworks.com/robots.txt text/plain 200 6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD - - 638 398190140 CITESEERX-CRAWL-2017-06-20-20170705062707827-00049-00058-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705063158203-00053-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-""")
-
- job.sandbox(stdin=raw)
- job.run_mapper()
-
- # wayback gets FETCH 1x times
-
- # grobid gets POST 3x times
-
- # hbase
-
-
- assert job.hb_table.row(b'1') == {}
- # HTTP 301
- assert job.hb_table.row(b'sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') == {}
- # valid
- assert job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J') != {}
- # text/plain
- assert job.hb_table.row(b'sha1:6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD') == {}
-
- row = job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J')
-
- assert struct.unpack("", row[b'file:size']) == 12345
- assert row[b'file:mime'] == b"application/pdf"
- assert struct.unpack("", row[b'grobid0:status_code']) == 200
- assert row[b'grobid0:quality'] == None # TODO
- status = json.loads(row[b'grobid0:status'].decode('utf-8'))
- assert type(row[b'grobid0:status']) == type(dict())
- assert row[b'grobid0:tei_xml'] == "<xml><lorem>ipsum</lorem></xml>"
- tei_json = json.loads(row[b'grobid0:tei_json'].decode('utf-8'))
- metadata = json.loads(row[b'grobid0:metadata'].decode('utf-8'))
-
-def test_parse_cdx_invalid(job):
-
- print("valid")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert status is None
-
- print("space-prefixed line")
- raw = io.BytesIO(b" com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
- assert 'prefix' in status['reason']
-
- print("commented line")
- raw = io.BytesIO(b"#com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
- assert 'prefix' in status['reason']
-
- print("wrong column count")
- raw = io.BytesIO(b"a b c d")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
- assert 'parse' in status['reason']
-
- print("missing mimetype")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
- assert 'parse' in status['reason']
-
- print("HTTP status")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 501 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
-
- print("datetime")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 501 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.parse_line(raw)
- assert info is None
- assert status['status'] == "invalid"
-
-
-def test_parse_cdx_skip(job):
-
- print("warc format")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.mapper(raw)
- assert info is None
- assert status['status'] == "skip"
- assert 'WARC' in status['reason']
-
- print("mimetype")
- raw = io.BytesIO(b"com,sagepub,cep)/content/28/9/960.full.pdf 20170705 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 200 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz")
- info, status = job.mapper(raw)
- assert info is None
- assert status['status'] == "skip"
- assert 'mimetype' in status['reason']
-
-def test_tei_json_convert():
- # TODO: load xml test vector, run it through
- with open('tests/files/23b29ea36382680716be08fc71aa81bd226e8a85.xml', 'r') as f:
- xml_content = f.read()
- pass
-
-def test_tei_json_convert_invalid():
- # TODO: pass in junk
- pass
generated by cgit v1.2.3 (git 2.39.1) at 2024-12-01 07:19:40 +0000