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-rw-r--r--backfill/Pipfile17
-rw-r--r--backfill/Pipfile.lock604
-rw-r--r--backfill/README.md26
-rw-r--r--backfill/TODO5
-rwxr-xr-xbackfill/backfill_hbase_from_cdx.py195
-rw-r--r--backfill/mrjob.conf4
-rw-r--r--backfill/pytest.ini8
-rw-r--r--backfill/tests/files/example.cdx20
-rw-r--r--backfill/tests/test_backfill_hbase_from_cdx.py54
9 files changed, 0 insertions, 933 deletions
diff --git a/backfill/Pipfile b/backfill/Pipfile
deleted file mode 100644
index 817a7ff..0000000
--- a/backfill/Pipfile
+++ /dev/null
@@ -1,17 +0,0 @@
-[[source]]
-url = "https://pypi.python.org/simple"
-verify_ssl = true
-name = "pypi"
-
-[dev-packages]
-
-[packages]
-happybase = "*"
-happybase-mock = "*"
-pytest = "*"
-mrjob = "*"
-pytest-pythonpath = "*"
-setuptools = "*"
-
-[requires]
-python_version = "3.5"
diff --git a/backfill/Pipfile.lock b/backfill/Pipfile.lock
deleted file mode 100644
index a14bdf6..0000000
--- a/backfill/Pipfile.lock
+++ /dev/null
@@ -1,604 +0,0 @@
-{
- "_meta": {
- "hash": {
- "sha256": "e056ad067114ae0f442c375ab12446d9fed77bbeda349a3461a161b0df7d01dc"
- },
- "pipfile-spec": 6,
- "requires": {
- "python_version": "3.5"
- },
- "sources": [
- {
- "name": "pypi",
- "url": "https://pypi.python.org/simple",
- "verify_ssl": true
- }
- ]
- },
- "default": {
- "attrs": {
- "hashes": [
- "sha256:1c7960ccfd6a005cd9f7ba884e6316b5e430a3f1a6c37c5f87d8b43f83b54ec9",
- "sha256:a17a9573a6f475c99b551c0e0a812707ddda1ec9653bed04c13841404ed6f450"
- ],
- "version": "==17.4.0"
- },
- "boto3": {
- "hashes": [
- "sha256:0f6e11b873c5a7127c17ca614487335e1b8f07f786053fc73c5c4aff81136e36",
- "sha256:9f1b2fa42fea254ad2e97c0ec3c4ec4c9aaf814cc31fd77853ff5bc7776f939d"
- ],
- "version": "==1.6.22"
- },
- "botocore": {
- "hashes": [
- "sha256:565102445ea5b9f32fe4681cf955d5eec3ea23f396d528dcfb24f45be7180003",
- "sha256:59933693c329ce059d4a29bdd72c02db5c5119228d88d64f829454f4253feddd"
- ],
- "version": "==1.9.22"
- },
- "cachetools": {
- "hashes": [
- "sha256:4319bbb78172e7bcf99423e1ecd6914b32336ccfe97d2058ffe62e641a7f3abe",
- "sha256:ede01f2d3cbd6ddc9e35e16c2b0ce011d8bb70ce0dbaf282f5b4df24b213bc5d"
- ],
- "version": "==2.0.1"
- },
- "certifi": {
- "hashes": [
- "sha256:14131608ad2fd56836d33a71ee60fa1c82bc9d2c8d98b7bdbc631fe1b3cd1296",
- "sha256:edbc3f203427eef571f79a7692bb160a2b0f7ccaa31953e99bd17e307cf63f7d"
- ],
- "version": "==2018.1.18"
- },
- "chardet": {
- "hashes": [
- "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae",
- "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691"
- ],
- "version": "==3.0.4"
- },
- "dill": {
- "hashes": [
- "sha256:97fd758f5fe742d42b11ec8318ecfcff8776bccacbfcec05dfd6276f5d450f73"
- ],
- "version": "==0.2.7.1"
- },
- "docutils": {
- "hashes": [
- "sha256:02aec4bd92ab067f6ff27a38a38a41173bf01bed8f89157768c1573f53e474a6",
- "sha256:51e64ef2ebfb29cae1faa133b3710143496eca21c530f3f71424d77687764274",
- "sha256:7a4bd47eaf6596e1295ecb11361139febe29b084a87bf005bf899f9a42edc3c6"
- ],
- "version": "==0.14"
- },
- "future": {
- "hashes": [
- "sha256:e39ced1ab767b5936646cedba8bcce582398233d6a627067d4c6a454c90cfedb"
- ],
- "version": "==0.16.0"
- },
- "gapic-google-cloud-datastore-v1": {
- "hashes": [
- "sha256:d5d0e6f7b4996a8dd5f4f5ad27cd389a5d7bedd07e6e9b9f3a4a3c3ea56d9053"
- ],
- "version": "==0.15.3"
- },
- "gapic-google-cloud-error-reporting-v1beta1": {
- "hashes": [
- "sha256:39f3f8e974441fb57ea98d0be0f4cdedd18cda9a628aec31e1f0841affab6f16"
- ],
- "version": "==0.15.3"
- },
- "gapic-google-cloud-logging-v2": {
- "hashes": [
- "sha256:b0b87bf56c50e4617fb539e5c36f2e286ba87c67a9b1ef5c9ec854d6d7b10023"
- ],
- "version": "==0.91.3"
- },
- "google-api-core": {
- "hashes": [
- "sha256:0144d467083ed54d2e8ccb4212d42c3724fe0b844b7d3a0ff85aea54b7ae8347",
- "sha256:1698e4af4edd2a8ec22d678fd9abe99c926c3a154b2232f32807946ca49e3da1"
- ],
- "version": "==0.1.4"
- },
- "google-auth": {
- "hashes": [
- "sha256:34088434cb2a2409360b8f3cbc04195a465df1fb2aafad71ebbded77cbf08803",
- "sha256:9051802d3dae256036cca9e34633a32c0ed1427730d4ebc513dff91ec8b6dd45"
- ],
- "version": "==1.4.1"
- },
- "google-cloud": {
- "hashes": [
- "sha256:21a11ad63cc29cfd4e4b6426947bdc2cbefe080f87ad68fa432cf2ac108cb87d",
- "sha256:a99ee610e058c2af84ca1da710afe80fca022d2572c4bce78f6fdecac6b32d07"
- ],
- "version": "==0.32.0"
- },
- "google-cloud-bigquery": {
- "hashes": [
- "sha256:1c5a42332b43b58d6039fbca697a88c230487212afb6b4a6cbe0d5f3d5685785",
- "sha256:511f27e5e398f8bb4dcad914596e32fe5bcb111257f032d93956a2dcced4a00f"
- ],
- "version": "==0.28.0"
- },
- "google-cloud-bigquery-datatransfer": {
- "hashes": [
- "sha256:c0a290f9456b52c633cf966c73311038eb2d3fd5a61b40059edad966a434e4f9",
- "sha256:f5b5d0de43805fa9ebb620c58e1d27e6d32d2fc8e9a2f954ee170f7a026c8757"
- ],
- "version": "==0.1.1"
- },
- "google-cloud-bigtable": {
- "hashes": [
- "sha256:22c7148dc339be791d2bf4616c87e523507618570356148375c631de412f551b",
- "sha256:7f86d2c8d7f22670da98fd67bcdc17cab793f7400725c8148b05ad829c02b95e"
- ],
- "version": "==0.28.1"
- },
- "google-cloud-container": {
- "hashes": [
- "sha256:275de3032de5696cd976459966e911abd3a1b624c7a918a8137a0308898e4f90",
- "sha256:a89afcb1fe96bc9361c231c223c3bbe19fa3787caeb4697cd5778990e1077270"
- ],
- "version": "==0.1.1"
- },
- "google-cloud-core": {
- "hashes": [
- "sha256:0090df83dbc5cb2405fa90844366d13176d1c0b48181c1807ab15f53be403f73",
- "sha256:89e8140a288acec20c5e56159461d3afa4073570c9758c05d4e6cb7f2f8cc440"
- ],
- "version": "==0.28.1"
- },
- "google-cloud-dataproc": {
- "hashes": [
- "sha256:1096534affe51b2e54b7c57f429b83c4566f92ed42fdee6613a001649c61c3d5",
- "sha256:8537b0de721ec4524cb580572f44f88d2b22a1f5c56968448003ca9023ecb951"
- ],
- "version": "==0.1.0"
- },
- "google-cloud-datastore": {
- "hashes": [
- "sha256:3094b38df19a0a6663b614122d97efcfeab35baf770070e960f6792522307997",
- "sha256:7cc7a48945dd0ec8aea2d8a169f8a3dfd84608392b00b514b4421b5a716b3263"
- ],
- "version": "==1.4.0"
- },
- "google-cloud-dns": {
- "hashes": [
- "sha256:2edcb33ea0025545746962839373ff6d314a5fac779fd7f7ddd0e592196fbb14",
- "sha256:5db79c21a2ee72854609db88d5a4ae897c32bf77bf6b51b3290e013b2db49e07"
- ],
- "version": "==0.28.0"
- },
- "google-cloud-error-reporting": {
- "hashes": [
- "sha256:6398c5963599f834d2ba2effbca4f67dbd21034252d33d0f367d1a7c868cfb98",
- "sha256:d4bdc20b5704afddc12a464622153c250be62a9d38a57d0f9371a0a3f3e43c71"
- ],
- "version": "==0.28.0"
- },
- "google-cloud-firestore": {
- "hashes": [
- "sha256:91b1373faf1c763ce9cda915a82655918035e4d09e8d2399170122f94274c977",
- "sha256:c12fe5a017a56c8d617bdf83ace3970afba886c09fc0d6c0d24f36f8644dc178"
- ],
- "version": "==0.28.0"
- },
- "google-cloud-language": {
- "hashes": [
- "sha256:59e7c3ed0dcf54d17943cad29ececb41adbbfc1b56c9ba278c13fd17aea54188",
- "sha256:b5c3073697b9c51b8f1a4a619f7b3b6744e88efe0e235958ff411ee17e825c61"
- ],
- "version": "==1.0.1"
- },
- "google-cloud-logging": {
- "hashes": [
- "sha256:81ff672f3b4c6f2a182282aae68f7c3dafbbfc8dc7dcc0db8dc90cd288adc3b8",
- "sha256:a1567aa858fbe223973c698f12198e5828fa66f3d42dac27e81b246ff385cd70"
- ],
- "version": "==1.4.0"
- },
- "google-cloud-monitoring": {
- "hashes": [
- "sha256:534d66d97611c9c6e08823532f5144f6786d3a6103a6d5ed6411ac465faa5341",
- "sha256:c7a336a469cf186e3621fe36bf0e4f291ea43a76b4a532b744a167d756a8170d"
- ],
- "version": "==0.28.1"
- },
- "google-cloud-pubsub": {
- "hashes": [
- "sha256:059dcd1862e07a47920474b0fe38d40508d8c4881929f17696a3aba834b11027",
- "sha256:ff6e74390dfa097e3cee7d5f323aeed37a23dfb1faa762d9efced09f972415a4"
- ],
- "version": "==0.30.1"
- },
- "google-cloud-resource-manager": {
- "hashes": [
- "sha256:ed4eaab40164614db77496986fb2900d93cb1daa7e1a23fd20be7bd46705a8f3",
- "sha256:fc29c11dcbe9208261d377185a1ae5331bab43f2a592222a25c8aca9c8031308"
- ],
- "version": "==0.28.1"
- },
- "google-cloud-runtimeconfig": {
- "hashes": [
- "sha256:095a1dab0d7b8e02dff06bee7844bb283a1c2c6f2e7333eb9896419a30143d82",
- "sha256:f441fbc22e2d0871ecb390854aa352cf467d2751cbc0dac7578274ead813519e"
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- "version": "==0.28.1"
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- "google-cloud-spanner": {
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- "sha256:39707e37e2399df0a6ea7f5b636fc06858359a70af92ac485bbba9bf810a43e7",
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- "version": "==0.29.0"
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- "google-cloud-speech": {
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- "google-cloud-storage": {
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- "version": "==1.6.0"
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- "google-cloud-trace": {
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- "google-cloud-vision": {
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- "google-gax": {
- "hashes": [
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- "google-resumable-media": {
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- "grpc-google-iam-v1": {
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- "grpcio": {
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- "sha256:435b3bab2e34814666854eec203c77b169df1cd56cf22fe449cf5510af416e7d",
- "sha256:4765600467d7cdb8f62a591d4427ddbeefcf4dbbe46e2f1b10af555e815ecbcb",
- "sha256:4fa658a7e1ba5727ca066b1c8bb64c6befb98f2b8007f04a16c7c84555bf11b9",
- "sha256:87e52924a99ac5935a468b3fe49c4b0090bd9b05470b55ed1192308791e6d332",
- "sha256:88afda198adb0a9da52a66152062027a57877b46f59ffcf55acc3cbfaff77160",
- "sha256:982439a872d41f969724efc139e0416ba45e0d7446e9a41fd2ebe19351adff9a",
- "sha256:a1bc37c9910d0fbf4d9e80d5822f92c6e01e28dd1eb01323636ed19666b537cb",
- "sha256:aa473b8276de39eeccc4ad6cbb7fd7feab0868180d72c0c93226033c79fa69b7",
- "sha256:ae82bf2f7ceac6ba956e816120b4f66bda035571350e46b61bbdde1808aed1dd",
- "sha256:b56e4f355c2499bb0bf8f8f4d0362b618b06afdfd2c10722710596dc7e295c6c",
- "sha256:d2accc8e354f0ed5b337865260a78b3c6851d2fe3c0e1b025d437122cc15dd31",
- "sha256:d410835e7554d064c2d99cfa0dd393ffbb0ccf52145ab51c725a8472ed254a3c",
- "sha256:d9e3105f6de6cb759b028702bdd21cb36d27e010227669e43c675b9957a3c180",
- "sha256:da306c80d69801a3e4115c448ed4ad481957d723ec1e00b99497c6661573c3e5",
- "sha256:e579e4124d2a0931ce39639c60e0711918d6659b933eb97e67f60f84666ea488",
- "sha256:e86639989c03831912fd9924beda26f6e9ffcc267656cea035bde9d88cf793b2",
- "sha256:ea9564f58144e2f07995d57fb8e636be5efb084cd59c8651391ada2bb75dc0ff",
- "sha256:f4a38071dd27f140cfe774f56aecdf0e33de926c21289cc9c7521ce8dd91fc1c"
- ],
- "version": "==1.10.0"
- },
- "happybase": {
- "hashes": [
- "sha256:e20376e2e32291798d2226502994134c1c4e175136d8375b3c517a234fa22481"
- ],
- "index": "pypi",
- "version": "==1.1.0"
- },
- "happybase-mock": {
- "hashes": [
- "sha256:327203ff63171a83c9fab34b249636b6a55550041273d2acddc0723433bdf260",
- "sha256:bd4583551f40e8b7f622ffd462f8e7ed1d34d14d73fa1758f0a5f413b1949f50"
- ],
- "index": "pypi",
- "version": "==0.9.0"
- },
- "httplib2": {
- "hashes": [
- "sha256:e71daed9a0e6373642db61166fa70beecc9bf04383477f84671348c02a04cbdf"
- ],
- "version": "==0.11.3"
- },
- "idna": {
- "hashes": [
- "sha256:2c6a5de3089009e3da7c5dde64a141dbc8551d5b7f6cf4ed7c2568d0cc520a8f",
- "sha256:8c7309c718f94b3a625cb648ace320157ad16ff131ae0af362c9f21b80ef6ec4"
- ],
- "version": "==2.6"
- },
- "jmespath": {
- "hashes": [
- "sha256:6a81d4c9aa62caf061cb517b4d9ad1dd300374cd4706997aff9cd6aedd61fc64",
- "sha256:f11b4461f425740a1d908e9a3f7365c3d2e569f6ca68a2ff8bc5bcd9676edd63"
- ],
- "version": "==0.9.3"
- },
- "more-itertools": {
- "hashes": [
- "sha256:0dd8f72eeab0d2c3bd489025bb2f6a1b8342f9b198f6fc37b52d15cfa4531fea",
- "sha256:11a625025954c20145b37ff6309cd54e39ca94f72f6bb9576d1195db6fa2442e",
- "sha256:c9ce7eccdcb901a2c75d326ea134e0886abfbea5f93e91cc95de9507c0816c44"
- ],
- "version": "==4.1.0"
- },
- "mrjob": {
- "hashes": [
- "sha256:669a98afe53f4e4ad9373445f91a8c26e86e30f1acc50c7fd274a42e1ea846d8",
- "sha256:6ec1aca9b376c98249a324dd7837cc76e676d48ba10b2b6cbef246eba0ee52e9"
- ],
- "index": "pypi",
- "version": "==0.6.2"
- },
- "oauth2client": {
- "hashes": [
- "sha256:5b5b056ec6f2304e7920b632885bd157fa71d1a7f3ddd00a43b1541a8d1a2460"
- ],
- "version": "==3.0.0"
- },
- "pluggy": {
- "hashes": [
- "sha256:7f8ae7f5bdf75671a718d2daf0a64b7885f74510bcd98b1a0bb420eb9a9d0cff"
- ],
- "version": "==0.6.0"
- },
- "ply": {
- "hashes": [
- "sha256:e7d1bdff026beb159c9942f7a17e102c375638d9478a7ecd4cc0c76afd8de0b8"
- ],
- "version": "==3.8"
- },
- "proto-google-cloud-datastore-v1": {
- "hashes": [
- "sha256:a431bb6a286107900c9ce3c48d316378867293c50a4d8a6c7393264600e916f9"
- ],
- "version": "==0.90.4"
- },
- "proto-google-cloud-error-reporting-v1beta1": {
- "hashes": [
- "sha256:526f49ae84dec16aa4740415c86a919d48206001d116d12df5badc5b2b051b82"
- ],
- "version": "==0.15.3"
- },
- "proto-google-cloud-logging-v2": {
- "hashes": [
- "sha256:e0538745f0f33760ffd5116f33385113835a3b2042a6c914923be0539e5280ce"
- ],
- "version": "==0.91.3"
- },
- "protobuf": {
- "hashes": [
- "sha256:01ccd6d03449ae75b779fb5bf4ed62177d61afe3c5e6465ccf3f8b2e1a84afbe",
- "sha256:1d92cc30b0b46cced33adde5853d920179eb5ea8eecdee9552502a7f29cc3f21",
- "sha256:242e4c7ae565267a8bc8b92d707177f915607ea4bd73244bec6cbf4a49b96661",
- "sha256:3b60685732bd0cbdc802dfcb6071efbcf5d927ce3127c13c33ea1a8efae3aa76",
- "sha256:3f655e1f99c3e14d56ca900af1b9a4715b691319a295cc38939d7f77eabd5e7c",
- "sha256:560a38e692a69957a70ba0e5839aa67430efd63072bf91b0539dac19055694cd",
- "sha256:5c1c8f6a0a68a874e3beff89255959dd80fad45870e96c88944a1b81a22dd5f5",
- "sha256:628a3bf0794a8b3cabb18db11eb67cc10e0cc6e5525d557ae7b682bb73fa2018",
- "sha256:7222d6616108b33ad6cbeff8117062a73c43cdc8fa8f64f6a322ebeb663e710e",
- "sha256:76ef6ca3c50e4cfd044861586d5f1b352e0fe7f17f883df6c165bad5b4d0e10a",
- "sha256:7c193e6964e752bd056735594826c5b03274ceb8f07349d3ae47d9766250ba96",
- "sha256:869e12bcfb5759e683f53ec1dd6155b7be034065431da289f0cb4510040a0799",
- "sha256:905414e5ea6cdb78d8730f66335755152b46685fcb9fc2f2134024e3ea9e8dcc",
- "sha256:ac0067e3c60737865ed72bb7416e02297d229d960902802d874c0e167128c809",
- "sha256:adf716a89c9cc1891ead79a861c427071ef59172f0e11967b00565a9547b3bd0",
- "sha256:bcfa99f5a82f5eaaf6e5cee5bfdca5a1670f5740aec1d93dae170645ed1a16b0",
- "sha256:cc94079ae6cbcea5ae194464a30f3223f075e06a0446f52bca9ddbeb6e9f412a",
- "sha256:d5d9edfdc5a3a01d06062d677b121081629782edf0e05ca1be14f15bb947eeee",
- "sha256:e269ab7a50bf0fa6fe6a88ea7dcc7a1079ae9450d9ab9b7730ac32916d55508b",
- "sha256:e7fd33a3474cbe18fd5b5620784a0fa21fcae3e402b1806e29c6b450c7f61706"
- ],
- "version": "==3.5.2.post1"
- },
- "psutil": {
- "hashes": [
- "sha256:230eeb3aeb077814f3a2cd036ddb6e0f571960d327298cc914c02385c3e02a63",
- "sha256:4152ae231709e3e8b80e26b6da20dc965a1a589959c48af1ed024eca6473f60d",
- "sha256:779ec7e7621758ca11a8d99a1064996454b3570154277cc21342a01148a49c28",
- "sha256:82a06785db8eeb637b349006cc28a92e40cd190fefae9875246d18d0de7ccac8",
- "sha256:8a15d773203a1277e57b1d11a7ccdf70804744ef4a9518a87ab8436995c31a4b",
- "sha256:94d4e63189f2593960e73acaaf96be235dd8a455fe2bcb37d8ad6f0e87f61556",
- "sha256:a3286556d4d2f341108db65d8e20d0cd3fcb9a91741cb5eb496832d7daf2a97c",
- "sha256:c91eee73eea00df5e62c741b380b7e5b6fdd553891bee5669817a3a38d036f13",
- "sha256:e2467e9312c2fa191687b89ff4bc2ad8843be4af6fb4dc95a7cc5f7d7a327b18"
- ],
- "version": "==5.4.3"
- },
- "py": {
- "hashes": [
- "sha256:29c9fab495d7528e80ba1e343b958684f4ace687327e6f789a94bf3d1915f881",
- "sha256:983f77f3331356039fdd792e9220b7b8ee1aa6bd2b25f567a963ff1de5a64f6a"
- ],
- "version": "==1.5.3"
- },
- "pyasn1": {
- "hashes": [
- "sha256:0d7f6e959fe53f3960a23d73f35e1fce61348b30915b6664309ca756de7c1f89",
- "sha256:5a0db897b311d265cde49615cf783f1c78613138605cdd0f907ecfa5b2aba3ee",
- "sha256:758cb50abddc03e4563fd9e7f03db56e3e87b58c0bd01247360326e5c0c7ffa5",
- "sha256:7d626683e3d792cccc608da02498aff37ab4f3dafd8905d6bf755d11f9b26b43",
- "sha256:a7efe807c4b83a859e2735c692b92ed7b567cfddc4163763412920041d876c2b",
- "sha256:b5a9ca48055b9a20f6d1b3d68e38692e5431c86a0f99ea602e61294e891fee5b",
- "sha256:c07d6e587b2f928366b1f67c09bda026a3e6fcc99e80a744dc67f8fca3895626",
- "sha256:d258b0a71994f7770599835249cece1caef3c70def868c4915e6e5ca49b67d15",
- "sha256:d5cd6ed995dba16fad0c521cfe31cd2d68400b53fcc2bce93326829be73ab6d1",
- "sha256:d84c2aea3cf43780e9e6a19f4e4dddee9f6976519020e64e47c57e5c7a8c3dd2",
- "sha256:e85895087905c65b5b594eb91f7522664c85545b147d5f4d4e7b1b07da8dcbdc",
- "sha256:f81c96761fca60d64b1c9b79ec2e40cf9495a745cf570613079ef324aeb9672b"
- ],
- "version": "==0.4.2"
- },
- "pyasn1-modules": {
- "hashes": [
- "sha256:041e9fbafac548d095f5b6c3b328b80792f006196e15a232b731a83c93d59493",
- "sha256:0cdca76a68dcb701fff58c397de0ef9922b472b1cb3ea9695ca19d03f1869787",
- "sha256:0cea139045c38f84abaa803bcb4b5e8775ea12a42af10019d942f227acc426c3",
- "sha256:0f2e50d20bc670be170966638fa0ae603f0bc9ed6ebe8e97a6d1d4cef30cc889",
- "sha256:47fb6757ab78fe966e7c58b2030b546854f78416d653163f0ce9290cf2278e8b",
- "sha256:598a6004ec26a8ab40a39ea955068cf2a3949ad9c0030da970f2e1ca4c9f1cc9",
- "sha256:72fd8b0c11191da088147c6e4678ec53e573923ecf60b57eeac9e97433e09fc2",
- "sha256:854700bbdd01394e2ada9c1bfbd0ed9f5d0c551350dbbd023e88b11d2771ae06",
- "sha256:af00ea8f2022b6287dc375b2c70f31ab5af83989fc6fe9eacd4976ce26cd7ccc",
- "sha256:b1f395cae2d669e0830cb023aa86f9f283b7a9aa32317d7f80d8e78aa2745812",
- "sha256:c6747146e95d2b14cc2a8399b2b0bde3f93778f8f9ec704690d2b589c376c137",
- "sha256:f53fe5bcebdf318f51399b250fe8325ef3a26d927f012cc0c8e0f9e9af7f9deb"
- ],
- "version": "==0.2.1"
- },
- "pytest": {
- "hashes": [
- "sha256:6266f87ab64692112e5477eba395cfedda53b1933ccd29478e671e73b420c19c",
- "sha256:fae491d1874f199537fd5872b5e1f0e74a009b979df9d53d1553fd03da1703e1"
- ],
- "index": "pypi",
- "version": "==3.5.0"
- },
- "pytest-pythonpath": {
- "hashes": [
- "sha256:f3d46b0a8276e856f7dc4f70ca97b88be6fbcf52d57ce36e35057d502388265e"
- ],
- "index": "pypi",
- "version": "==0.7.2"
- },
- "python-dateutil": {
- "hashes": [
- "sha256:891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca",
- "sha256:95511bae634d69bc7329ba55e646499a842bc4ec342ad54a8cdb65645a0aad3c"
- ],
- "version": "==2.6.1"
- },
- "pytz": {
- "hashes": [
- "sha256:07edfc3d4d2705a20a6e99d97f0c4b61c800b8232dc1c04d87e8554f130148dd",
- "sha256:3a47ff71597f821cd84a162e71593004286e5be07a340fd462f0d33a760782b5",
- "sha256:410bcd1d6409026fbaa65d9ed33bf6dd8b1e94a499e32168acfc7b332e4095c0",
- "sha256:5bd55c744e6feaa4d599a6cbd8228b4f8f9ba96de2c38d56f08e534b3c9edf0d",
- "sha256:61242a9abc626379574a166dc0e96a66cd7c3b27fc10868003fa210be4bff1c9",
- "sha256:887ab5e5b32e4d0c86efddd3d055c1f363cbaa583beb8da5e22d2fa2f64d51ef",
- "sha256:ba18e6a243b3625513d85239b3e49055a2f0318466e0b8a92b8fb8ca7ccdf55f",
- "sha256:ed6509d9af298b7995d69a440e2822288f2eca1681b8cce37673dbb10091e5fe",
- "sha256:f93ddcdd6342f94cea379c73cddb5724e0d6d0a1c91c9bdef364dc0368ba4fda"
- ],
- "version": "==2018.3"
- },
- "pyyaml": {
- "hashes": [
- "sha256:0c507b7f74b3d2dd4d1322ec8a94794927305ab4cebbe89cc47fe5e81541e6e8",
- "sha256:16b20e970597e051997d90dc2cddc713a2876c47e3d92d59ee198700c5427736",
- "sha256:3262c96a1ca437e7e4763e2843746588a965426550f3797a79fca9c6199c431f",
- "sha256:326420cbb492172dec84b0f65c80942de6cedb5233c413dd824483989c000608",
- "sha256:4474f8ea030b5127225b8894d626bb66c01cda098d47a2b0d3429b6700af9fd8",
- "sha256:592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab",
- "sha256:5ac82e411044fb129bae5cfbeb3ba626acb2af31a8d17d175004b70862a741a7",
- "sha256:5f84523c076ad14ff5e6c037fe1c89a7f73a3e04cf0377cb4d017014976433f3",
- "sha256:827dc04b8fa7d07c44de11fabbc888e627fa8293b695e0f99cb544fdfa1bf0d1",
- "sha256:b4c423ab23291d3945ac61346feeb9a0dc4184999ede5e7c43e1ffb975130ae6",
- "sha256:bc6bced57f826ca7cb5125a10b23fd0f2fff3b7c4701d64c439a300ce665fff8",
- "sha256:c01b880ec30b5a6e6aa67b09a2fe3fb30473008c85cd6a67359a1b15ed6d83a4",
- "sha256:ca233c64c6e40eaa6c66ef97058cdc80e8d0157a443655baa1b2966e812807ca",
- "sha256:e863072cdf4c72eebf179342c94e6989c67185842d9997960b3e69290b2fa269"
- ],
- "version": "==3.12"
- },
- "requests": {
- "hashes": [
- "sha256:6a1b267aa90cac58ac3a765d067950e7dbbf75b1da07e895d1f594193a40a38b",
- "sha256:9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e"
- ],
- "version": "==2.18.4"
- },
- "rsa": {
- "hashes": [
- "sha256:25df4e10c263fb88b5ace923dd84bf9aa7f5019687b5e55382ffcdb8bede9db5",
- "sha256:43f682fea81c452c98d09fc316aae12de6d30c4b5c84226642cf8f8fd1c93abd"
- ],
- "version": "==3.4.2"
- },
- "s3transfer": {
- "hashes": [
- "sha256:90dc18e028989c609146e241ea153250be451e05ecc0c2832565231dacdf59c1",
- "sha256:c7a9ec356982d5e9ab2d4b46391a7d6a950e2b04c472419f5fdec70cc0ada72f"
- ],
- "version": "==0.1.13"
- },
- "six": {
- "hashes": [
- "sha256:70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9",
- "sha256:832dc0e10feb1aa2c68dcc57dbb658f1c7e65b9b61af69048abc87a2db00a0eb"
- ],
- "version": "==1.11.0"
- },
- "thriftpy": {
- "hashes": [
- "sha256:309e57d97b5bfa01601393ad4f245451e989d6206a59279e56866b264a99796d"
- ],
- "version": "==0.3.9"
- },
- "urllib3": {
- "hashes": [
- "sha256:06330f386d6e4b195fbfc736b297f58c5a892e4440e54d294d7004e3a9bbea1b",
- "sha256:cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f"
- ],
- "version": "==1.22"
- }
- },
- "develop": {}
-}
diff --git a/backfill/README.md b/backfill/README.md
deleted file mode 100644
index 2e3dc7a..0000000
--- a/backfill/README.md
+++ /dev/null
@@ -1,26 +0,0 @@
-
-Run tests:
-
- pipenv run python -m pytest
-
-An example actually connecting to HBase from a local machine, with thrift
-running on a devbox:
-
- ./backfill_hbase_from_cdx.py tests/files/example.cdx \
- --hbase-table wbgrp-journal-extract-0-qa \
- --hbase-host bnewbold-dev.us.archive.org
-
-Actual invocation to run on Hadoop cluster (running on an IA devbox, where
-hadoop environment is configured):
-
- # Create tarball of virtualenv
- pipenv shell
- tar -czf backfill-4OmRI0zZ.tar.gz -C /home/bnewbold/.local/share/virtualenvs/backfill-4OmRI0zZ .
-
- ./backfill_hbase_from_cdx.py \
- -r hadoop \
- --hbase-host bnewbold-dev.us.archive.org \
- --hbase-table wbgrp-journal-extract-0-qa \
- -c mrjob.conf \
- --archive backfill-4OmRI0zZ.tar.gz#venv \
- hdfs:///user/bnewbold/journal_crawl_cdx/citeseerx_crawl_2017.cdx
diff --git a/backfill/TODO b/backfill/TODO
deleted file mode 100644
index e4023de..0000000
--- a/backfill/TODO
+++ /dev/null
@@ -1,5 +0,0 @@
-- better test coverage (actually check coverage!)
-- use pre-mapper command to filter down, eg, by status type?
-- automation/docs for bundling virtualenv along
-- think about speedups
-- refactor into extraction folder
diff --git a/backfill/backfill_hbase_from_cdx.py b/backfill/backfill_hbase_from_cdx.py
deleted file mode 100755
index fe37bd5..0000000
--- a/backfill/backfill_hbase_from_cdx.py
+++ /dev/null
@@ -1,195 +0,0 @@
-#!/usr/bin/env python3
-"""
-Streaming Hadoop script to import CDX metadata into the HBase fulltext table,
-primarily for URL-agnostic crawl de-duplication. Takes only "fulltext" file
-formats.
-
-Requires:
-- happybase
-- mrjob
-
-TODO:
-- argparse
-- refactor into an object
-- tests in separate file
-- nose tests
-- sentry integration for error reporting
-"""
-
-import sys
-import json
-from datetime import datetime
-import happybase
-import mrjob
-from mrjob.job import MRJob
-
-NORMAL_MIME = (
- 'application/pdf',
- 'application/postscript',
- 'text/html',
- 'text/xml',
-)
-
-def normalize_mime(raw):
- raw = raw.lower()
- for norm in NORMAL_MIME:
- if raw.startswith(norm):
- return norm
-
- # Special cases
- if raw.startswith('application/xml'):
- return 'text/xml'
- if raw.startswith('application/x-pdf'):
- return 'application/pdf'
- return None
-
-def test_normalize_mime():
- assert normalize_mime("asdf") == None
- assert normalize_mime("application/pdf") == "application/pdf"
- assert normalize_mime("application/pdf+journal") == "application/pdf"
- assert normalize_mime("Application/PDF") == "application/pdf"
- assert normalize_mime("application/p") == None
- assert normalize_mime("application/xml+stuff") == "text/xml"
-
-def transform_line(raw_cdx):
-
- cdx = raw_cdx.split()
- if len(cdx) < 11:
- return None
-
- surt = cdx[0]
- dt = cdx[1]
- url = cdx[2]
- mime = normalize_mime(cdx[3])
- http_status = cdx[4]
- key = cdx[5]
- c_size = cdx[8]
- offset = cdx[9]
- warc = cdx[10]
-
- if not (key.isalnum() and c_size.isdigit() and offset.isdigit()
- and http_status == "200" and len(key) == 32 and dt.isdigit()):
- return None
-
- if '-' in (surt, dt, url, mime, http_status, key, c_size, offset, warc):
- return None
-
- key = "sha1:{}".format(key)
-
- info = dict(surt=surt, dt=dt, url=url, c_size=int(c_size),
- offset=int(offset), warc=warc)
-
- warc_file = warc.split('/')[-1]
- dt_iso = datetime.strptime(dt, "%Y%m%d%H%M%S").isoformat()
- try:
- dt_iso = datetime.strptime(dt, "%Y%m%d%H%M%S").isoformat()
- except:
- return None
-
- # 'i' intentionally not set
- heritrix = dict(u=url, d=dt_iso, f=warc_file, o=int(offset), c=1)
- return {'key': key, 'file:mime': mime, 'file:cdx': info, 'f:c': heritrix}
-
-def test_transform_line():
-
- raw = "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf 20170828233154 https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf application/pdf 200 WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G - - 210251 931661233 SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz"
- correct = {
- 'key': "sha1:WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G",
- 'file:mime': "application/pdf",
- 'file:cdx': {
- 'surt': "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'url': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'dt': "20170828233154",
- 'warc': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
- 'offset': 931661233,
- 'c_size': 210251,
- },
- 'f:c': {
- 'u': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
- 'd': "2017-08-28T23:31:54",
- 'f': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
- 'o': 931661233,
- 'c': 1,
- }
- }
-
- assert transform_line(raw) == correct
- assert transform_line(raw + "\n") == correct
- assert transform_line(raw + " extra_field") == correct
-
-
-class MRCDXBackfillHBase(MRJob):
-
- # CDX lines in; JSON status out
- INPUT_PROTOCOL = mrjob.protocol.RawValueProtocol
- OUTPUT_PROTOCOL = mrjob.protocol.JSONValueProtocol
-
- def configure_args(self):
- super(MRCDXBackfillHBase, self).configure_args()
-
- self.add_passthru_arg('--hbase-table',
- type=str,
- default='wbgrp-journal-extract-0-qa',
- help='HBase table to backfill into (must exist)')
- self.add_passthru_arg('--hbase-host',
- type=str,
- default='localhost',
- help='HBase thrift API host to connect to')
-
- def __init__(self, *args, **kwargs):
-
- # Allow passthrough for tests
- if 'hb_table' in kwargs:
- self.hb_table = kwargs.pop('hb_table')
- else:
- self.hb_table = None
-
- super(MRCDXBackfillHBase, self).__init__(*args, **kwargs)
- self.mime_filter = ['application/pdf']
-
- def mapper_init(self):
-
- if self.hb_table is None:
- try:
- host = self.options.hbase_host
- # TODO: make these configs accessible from... mrconf.cfg?
- hb_conn = happybase.Connection(host=host, transport="framed",
- protocol="compact")
- except Exception as err:
- raise Exception("Couldn't connect to HBase using host: {}".format(host))
- self.hb_table = hb_conn.table(self.options.hbase_table)
-
- def mapper(self, _, raw_cdx):
-
- self.increment_counter('lines', 'total')
-
- if (raw_cdx.startswith(' ') or raw_cdx.startswith('filedesc') or
- raw_cdx.startswith('#')):
-
- # Skip line
- # XXX: tests don't cover this path; need coverage!
- self.increment_counter('lines', 'invalid')
- return _, dict(status="invalid")
-
- info = transform_line(raw_cdx)
- if info is None:
- self.increment_counter('lines', 'invalid')
- return _, dict(status="invalid")
-
- if info['file:mime'] not in self.mime_filter:
- self.increment_counter('lines', 'skip')
- return _, dict(status="skip")
-
- key = info.pop('key')
- info['f:c'] = json.dumps(info['f:c'], sort_keys=True, indent=None)
- info['file:cdx'] = json.dumps(info['file:cdx'], sort_keys=True,
- indent=None)
-
- self.hb_table.put(key, info)
- self.increment_counter('lines', 'success')
-
- yield _, dict(status="success")
-
-if __name__ == '__main__':
- MRCDXBackfillHBase.run()
-
diff --git a/backfill/mrjob.conf b/backfill/mrjob.conf
deleted file mode 100644
index cb286f1..0000000
--- a/backfill/mrjob.conf
+++ /dev/null
@@ -1,4 +0,0 @@
-runners:
- hadoop:
- setup:
- - export PYTHONPATH=$PYTHONPATH:venv/lib/python3.5/site-packages/
diff --git a/backfill/pytest.ini b/backfill/pytest.ini
deleted file mode 100644
index 0a5e921..0000000
--- a/backfill/pytest.ini
+++ /dev/null
@@ -1,8 +0,0 @@
-
-[pytest]
-
-# allow imports from files in current directory
-python_paths = .
-
-# search for 'test_*' functions in all python files, not just under tests
-python_files = *.py
diff --git a/backfill/tests/files/example.cdx b/backfill/tests/files/example.cdx
deleted file mode 100644
index 84e3271..0000000
--- a/backfill/tests/files/example.cdx
+++ /dev/null
@@ -1,20 +0,0 @@
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-fi,tkk,lib)/diss/2001/isbn951225459x/isbn951225459x.pdf 20170705074926 http://lib.tkk.fi/Diss/2001/isbn951225459X/isbn951225459X.pdf application/pdf 200 KJBCOT7LGBNIAVGEGPUELK5OK6RTFORR - - 344175 255650124 CITESEERX-CRAWL-2017-06-20-20170705074433815-00129-00138-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705074843696-00134-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
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-org,ifaamas)/proceedings/aamas09/pdf/01_full%20papers/02_08_fp_0272.pdf 20170706081902 http://www.ifaamas.org/Proceedings/aamas09/pdf/01_Full%20Papers/02_08_FP_0272.pdf application/pdf 200 GYHX35QJWRJELWJ5GDQZPTPOUUZOCTKF - - 251180 34635154 CITESEERX-CRAWL-2017-06-20-20170706081825105-00419-00428-wbgrp-svc285/CITESEERX-CRAWL-2017-06-20-20170706081838210-00420-3671~wbgrp-svc285.us.archive.org~8443.warc.gz
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-za,co,csir,researchspace)/dspace/bitstream/10204/4048/1/smith2_2010.pdf 20170706094159 http://researchspace.csir.co.za/dspace/bitstream/10204/4048/1/Smith2_2010.pdf unk 301 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 446 104830407 CITESEERX-CRAWL-2017-06-20-20170706093829986-00509-00518-wbgrp-svc285/CITESEERX-CRAWL-2017-06-20-20170706094137978-00512-3671~wbgrp-svc285.us.archive.org~8443.warc.gz
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-jp,co,nittuden)/business/pdf/transparent_thermoplastic_resin_with_electron_beam_cross-linking.pdf 20170706083459 http://www.nittuden.co.jp/business/pdf/Transparent_Thermoplastic_Resin_with_Electron_Beam_Cross-Linking.pdf application/pdf 200 V32E3CCO7NMI2M4OHLKG73DXD72LR4B2 - - 715081 761088410 CITESEERX-CRAWL-2017-06-20-20170706082646066-00429-00438-wbgrp-svc285/CITESEERX-CRAWL-2017-06-20-20170706083257353-00436-3671~wbgrp-svc285.us.archive.org~8443.warc.gz
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diff --git a/backfill/tests/test_backfill_hbase_from_cdx.py b/backfill/tests/test_backfill_hbase_from_cdx.py
deleted file mode 100644
index 1a13e5b..0000000
--- a/backfill/tests/test_backfill_hbase_from_cdx.py
+++ /dev/null
@@ -1,54 +0,0 @@
-"""
-TODO: could probably refactor to use unittest.mock.patch('happybase')
-"""
-
-import io
-import json
-import pytest
-import mrjob
-import happybase_mock
-from backfill_hbase_from_cdx import MRCDXBackfillHBase
-
-@pytest.fixture
-def job():
- """
- Note: this mock only seems to work with job.run_mapper(), not job.run();
- the later results in a separate instantiation without the mock?
- """
- conn = happybase_mock.Connection()
- conn.create_table('wbgrp-journal-extract-test',
- {'file': {}, 'grobid0': {}, 'f': {}})
- table = conn.table('wbgrp-journal-extract-test')
-
- job = MRCDXBackfillHBase(['--no-conf', '-'], hb_table=table)
- return job
-
-
-def test_some_lines(job):
-
- raw = io.BytesIO(b"""
-com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 301 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-eu,eui,cadmus)/bitstream/handle/1814/36635/rscas_2015_03.pdf;jsessionid=761393014319a39f40d32ae3eb3a853f?sequence=1 20170705062202 http://cadmus.eui.eu/bitstream/handle/1814/36635/RSCAS_2015_03.pdf%3Bjsessionid%3D761393014319A39F40D32AE3EB3A853F?sequence%3D1 application/PDF 200 MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J - - 854156 328850624 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-com,pbworks,educ333b)/robots.txt 20170705063311 http://educ333b.pbworks.com/robots.txt text/plain 200 6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD - - 638 398190140 CITESEERX-CRAWL-2017-06-20-20170705062707827-00049-00058-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705063158203-00053-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-""")
-
- job.sandbox(stdin=raw)
- job.run_mapper()
-
- assert job.hb_table.row(b'1') == {}
- # HTTP 301
- assert job.hb_table.row(b'sha1:3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') == {}
- # valid
- assert job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J') != {}
- # text/plain
- assert job.hb_table.row(b'sha1:6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD') == {}
-
- row = job.hb_table.row(b'sha1:MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J')
- assert row[b'file:mime'] == b"application/pdf"
-
- file_cdx = json.loads(row[b'file:cdx'].decode('utf-8'))
- assert int(file_cdx['offset']) == 328850624
-
- f_c = json.loads(row[b'f:c'].decode('utf-8'))
- assert f_c['u'] == "http://cadmus.eui.eu/bitstream/handle/1814/36635/RSCAS_2015_03.pdf%3Bjsessionid%3D761393014319A39F40D32AE3EB3A853F?sequence%3D1"
- assert b'i' not in f_c