rename jvm/scalding directories

12 files changed, 365 insertions, 0 deletions

diff --git a/scalding/.gitignore b/scalding/.gitignore
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index 0000000..7798ee0
--- /dev/null
+++ b/scalding/.gitignore
@@ -0,0 +1,3 @@
+target
+project/project/
+project/targer/
diff --git a/scalding/README.md b/scalding/README.md
new file mode 100644
index 0000000..e41e9ec
--- /dev/null
+++ b/scalding/README.md
@@ -0,0 +1,63 @@
+
+following https://medium.com/@gayani.nan/how-to-run-a-scalding-job-567160fa193
+
+
+running on my laptop:
+
+    openjdk version "1.8.0_171"
+    OpenJDK Runtime Environment (build 1.8.0_171-8u171-b11-1~deb9u1-b11)
+    OpenJDK 64-Bit Server VM (build 25.171-b11, mixed mode)
+
+    Scala code runner version 2.11.8 -- Copyright 2002-2016, LAMP/EPFL
+
+    sbt: 1.1.5
+
+    sbt new scala/scala-seed.g8
+
+    # inserted additional deps, tweaked versions
+    # hadoop 2.5.0 seems to conflict with cascading; sticking with 2.6.0
+
+    sbt assembly
+    scp target/scala-2.11/scald-mvp-assembly-0.1.0-SNAPSHOT.jar devbox:
+
+    # on cluster:
+    yarn jar scald-mvp-assembly-0.1.0-SNAPSHOT.jar WordCount --hdfs --input hdfs:///user/bnewbold/dummy.txt
+
+later, using hadop command instead:
+
+    hadoop jar scald-mvp-assembly-0.1.0-SNAPSHOT.jar com.twitter.scalding.Tool example.WordCountJob --hdfs --input hdfs:///user/bnewbold/dummy.txt --output hdfs:///user/bnewbold/test_scalding_out3
+
+helpful for debugging dependency woes:
+
+    sbt dependencyTree
+
+testing the spyglass example program (expect a table error):
+
+    hadoop jar scald-mvp-assembly-0.1.0-SNAPSHOT.jar com.twitter.scalding.Tool example.SimpleHBaseSourceExample --hdfs --output hdfs:///user/bnewbold/spyglass_out_test --app.conf.path thing.conf --debug true
+    # org.apache.hadoop.hbase.TableNotFoundException: table_name
+
+running a spyglass job (gives a nullpointer exception):
+
+    hadoop jar scald-mvp-assembly-0.1.0-SNAPSHOT.jar com.twitter.scalding.Tool sandcrawler.HBaseRowCountJob --hdfs --output hdfs:///user/bnewbold/spyglass_out_test --app.conf.path thing.conf
+
+    # Caused by: java.lang.NullPointerException
+    #         at parallelai.spyglass.hbase.HBaseSource.<init>(HBaseSource.scala:48)
+    #         at sandcrawler.HBaseRowCountJob.<init>(HBaseRowCountJob.scala:17)
+
+## Custom build
+
+in SpyGlass repo:
+
+    # This builds the new .jar and installs it in the (laptop local) ~/.m2
+    # repository
+    mvn clean install -U
+
+    # Copy that .jar (and associated pom.xml) over to where sbt can find it
+    mkdir -p ~/.sbt/preloaded/parallelai/
+    cp -r ~/.m2/repository/parallelai/parallelai.spyglass ~/.sbt/preloaded/parallelai/
+
+    # then build here
+    sbt assembly
+
+The medium-term plan here is to push the custom SpyGlass jar as a static maven
+repo to an archive.org item, and point build.sbt to that folder.
diff --git a/scalding/build.sbt b/scalding/build.sbt
new file mode 100644
index 0000000..aae8506
--- /dev/null
+++ b/scalding/build.sbt
@@ -0,0 +1,49 @@
+import Dependencies._
+
+val hadoopVersion = "2.5.0-cdh5.3.1" // IA cluster 2018-05-21: 2.5.0-cdh5.3.1
+val hbaseVersion = "0.98.6-cdh5.3.1" // IA cluster 2018-05-21: 0.98.6-cdh5.3.1
+
+lazy val root = (project in file(".")).
+
+  settings(
+    inThisBuild(List(
+      organization := "org.archive",
+      scalaVersion := "2.11.8",
+      version      := "0.1.0-SNAPSHOT",
+      test in assembly := {},
+    )),
+
+    name := "scald-mvp",
+
+    resolvers += "conjars.org" at "http://conjars.org/repo",
+    resolvers += "Apache HBase" at "https://repository.apache.org/content/repositories/releases",
+    resolvers += "Cloudera Maven Repository" at "https://repository.cloudera.com/artifactory/cloudera-repos",
+    resolvers += "Twitter Maven Repository" at "https://maven.twttr.com",
+
+    libraryDependencies += scalaTest % Test,
+    libraryDependencies += "org.scala-lang" % "scala-library" % "2.11.8",
+    libraryDependencies += "com.twitter" % "scalding-core_2.11" % "0.17.2",
+    libraryDependencies += "org.apache.hadoop" % "hadoop-common" % hadoopVersion,
+    libraryDependencies += "org.apache.hadoop" % "hadoop-client" % hadoopVersion,
+    libraryDependencies += "org.apache.hadoop" % "hadoop-mapreduce-client-jobclient" % hadoopVersion classifier "tests",
+    libraryDependencies += "org.apache.hbase" % "hbase-common" % hbaseVersion,
+    libraryDependencies += "parallelai" % "parallelai.spyglass" % "2.11_0.17.2_cdh5.3.1",
+
+    // cargo-culted from twitter/scalding's build.sbt
+    // hint via https://stackoverflow.com/questions/23280494/sbt-assembly-error-deduplicate-different-file-contents-found-in-the-following#23280952
+    mergeStrategy in assembly :=  {
+        case s if s.endsWith(".class") => MergeStrategy.last
+        case s if s.endsWith("project.clj") => MergeStrategy.concat
+        case s if s.endsWith(".html") => MergeStrategy.last
+        case s if s.endsWith(".dtd") => MergeStrategy.last
+        case s if s.endsWith(".xsd") => MergeStrategy.last
+        case s if s.endsWith("pom.properties") => MergeStrategy.last
+        case s if s.endsWith("pom.xml") => MergeStrategy.last
+        case s if s.endsWith(".jnilib") => MergeStrategy.rename
+        case s if s.endsWith("jansi.dll") => MergeStrategy.rename
+        case s if s.endsWith("libjansi.so") => MergeStrategy.rename
+        case s if s.endsWith("properties") => MergeStrategy.filterDistinctLines
+        case s if s.endsWith("xml") => MergeStrategy.last
+        case x => (mergeStrategy in assembly).value(x)
+    },
+  )
diff --git a/scalding/project/Dependencies.scala b/scalding/project/Dependencies.scala
new file mode 100644
index 0000000..558929d
--- /dev/null
+++ b/scalding/project/Dependencies.scala
@@ -0,0 +1,5 @@
+import sbt._
+
+object Dependencies {
+  lazy val scalaTest = "org.scalatest" %% "scalatest" % "3.0.5"
+}
diff --git a/scalding/project/build.properties b/scalding/project/build.properties
new file mode 100644
index 0000000..31334bb
--- /dev/null
+++ b/scalding/project/build.properties
@@ -0,0 +1 @@
+sbt.version=1.1.1
diff --git a/scalding/project/plugins.sbt b/scalding/project/plugins.sbt
new file mode 100644
index 0000000..084d4bf
--- /dev/null
+++ b/scalding/project/plugins.sbt
@@ -0,0 +1,2 @@
+addSbtPlugin("com.eed3si9n" % "sbt-assembly" % "0.14.6")
+addSbtPlugin("net.virtual-void" % "sbt-dependency-graph" % "0.9.0")
diff --git a/scalding/src/main/scala/example/SimpleHBaseSourceExample.scala b/scalding/src/main/scala/example/SimpleHBaseSourceExample.scala
new file mode 100644
index 0000000..fe2a120
--- /dev/null
+++ b/scalding/src/main/scala/example/SimpleHBaseSourceExample.scala
@@ -0,0 +1,36 @@
+package example
+
+import com.twitter.scalding.{Tsv, Args}
+import parallelai.spyglass.base.JobBase
+import org.apache.log4j.{Level, Logger}
+import parallelai.spyglass.hbase.{HBasePipeConversions, HBaseSource}
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+import cascading.tuple.Fields
+import cascading.property.AppProps
+import java.util.Properties
+
+/**
+  * Simple example of HBaseSource usage
+  */
+class SimpleHBaseSourceExample(args: Args) extends JobBase(args) with HBasePipeConversions {
+
+   val isDebug: Boolean = args("debug").toBoolean
+
+   if (isDebug) Logger.getRootLogger.setLevel(Level.DEBUG)
+
+   val output = args("output")
+
+   val hbs = new HBaseSource(
+     "table_name",
+     //"quorum_name:2181",
+     "mtrcs-zk1.us.archive.org:2181",  // HBase Zookeeper server (to get runtime config info; can be array?)
+     new Fields("key"),
+     List("column_family"),
+     List(new Fields("column_name1", "column_name2")),
+     sourceMode = SourceMode.GET_LIST, keyList = List("1", "2", "3"))
+     .read
+     .debug
+     .fromBytesWritable(new Fields("key", "column_name1", "column_name2"))
+     .write(Tsv(output format "get_list"))
+
+ }
diff --git a/scalding/src/main/scala/example/WordCountJob.scala b/scalding/src/main/scala/example/WordCountJob.scala
new file mode 100644
index 0000000..0e63fed
--- /dev/null
+++ b/scalding/src/main/scala/example/WordCountJob.scala
@@ -0,0 +1,12 @@
+package example
+
+import com.twitter.scalding._
+
+class WordCountJob(args: Args) extends Job(args) {
+  TypedPipe.from(TextLine(args("input")))
+    .flatMap { line => line.split("\\s+") }
+    .map { word => (word, 1L) }
+    .sumByKey
+    // The compiler will enforce the type coming out of the sumByKey is the same as the type we have for our sink
+    .write(TypedTsv[(String, Long)](args("output")))
+}
diff --git a/scalding/src/main/scala/sandcrawler/HBaseRowCountJob.scala b/scalding/src/main/scala/sandcrawler/HBaseRowCountJob.scala
new file mode 100644
index 0000000..5df6b2e
--- /dev/null
+++ b/scalding/src/main/scala/sandcrawler/HBaseRowCountJob.scala
@@ -0,0 +1,41 @@
+package sandcrawler
+
+import com.twitter.scalding._
+import parallelai.spyglass.base.JobBase
+import parallelai.spyglass.hbase.{HBaseSource, HBasePipeConversions, HBaseConstants}
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+import cascading.tuple.Fields
+import cascading.property.AppProps
+import java.util.Properties
+
+
+class HBaseRowCountJob(args: Args) extends JobBase(args) with HBasePipeConversions {
+
+
+  // For now doesn't actually count, just dumps a "word count"
+
+  val output = args("output")
+
+  val hbs = new HBaseSource(
+    //"table_name",
+    //"quorum_name:2181",
+    "wbgrp-journal-extract-0-qa",     // HBase Table Name
+    "mtrcs-zk1.us.archive.org:2181",  // HBase Zookeeper server (to get runtime config info; can be array?)
+    new Fields("key"),
+    List("file"),
+    List(new Fields("size", "mimetype")),
+    sourceMode = SourceMode.GET_LIST, keyList = List("sha1:K2DKSSVTXWPRMFDTWSTCQW3RVWRIOV3Q", "sha1:C3YNNEGH5WAG5ZAAXWAEBNXJWT6CZ3WU"))
+    .read
+    .debug
+    .fromBytesWritable(new Fields("key"))
+    .write(Tsv(output format "get_list"))
+
+    /*
+    List("column_family"),
+    sourceMode = SourceMode.SCAN_ALL)
+    .read
+    .debug
+    .fromBytesWritable(new Fields("key"))
+    .write(Tsv(output format "get_list"))
+    */
+}
diff --git a/scalding/src/test/scala/example/SimpleHBaseSourceExampleTest.scala b/scalding/src/test/scala/example/SimpleHBaseSourceExampleTest.scala
new file mode 100644
index 0000000..cf068c1
--- /dev/null
+++ b/scalding/src/test/scala/example/SimpleHBaseSourceExampleTest.scala
@@ -0,0 +1,58 @@
+package example
+
+import org.junit.runner.RunWith
+import com.twitter.scalding.{JobTest, TupleConversions}
+import org.scalatest.FunSpec
+import org.scalatest.junit.JUnitRunner
+import org.slf4j.LoggerFactory
+import org.apache.hadoop.hbase.io.ImmutableBytesWritable
+import cascading.tuple.{Tuple, Fields}
+import org.apache.hadoop.hbase.util.Bytes
+import scala._
+import com.twitter.scalding.Tsv
+import parallelai.spyglass.hbase.HBaseSource
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+
+/**
+ * Example of how to define tests for HBaseSource
+ */
+@RunWith(classOf[JUnitRunner])
+class SimpleHBaseSourceExampleTest extends FunSpec with TupleConversions {
+
+  val output = "/tmp/testOutput"
+
+  val log = LoggerFactory.getLogger(this.getClass.getName)
+
+  val sampleData = List(
+    List("1", "kk1", "pp1"),
+    List("2", "kk2", "pp2"),
+    List("3", "kk3", "pp3")
+  )
+
+  JobTest("example.SimpleHBaseSourceExample")
+    .arg("test", "")
+    .arg("app.conf.path", "app.conf")
+    .arg("output", output)
+    .arg("debug", "true")
+    .source[Tuple](
+    new HBaseSource(
+      "table_name",
+      "mtrcs-zk1.us.archive.org:2181",
+      new Fields("key"),
+      List("column_family"),
+      List(new Fields("column_name1", "column_name2")),
+      sourceMode = SourceMode.GET_LIST, keyList = List("1", "2", "3")),
+    sampleData.map(l => new Tuple(l.map(s => {new ImmutableBytesWritable(Bytes.toBytes(s))}):_*)))
+    .sink[Tuple](Tsv(output format "get_list")) {
+      outputBuffer =>
+        log.debug("Output => " + outputBuffer)
+
+        it("should return the test data provided.") {
+          println("outputBuffer.size => " + outputBuffer.size)
+          assert(outputBuffer.size === 3)
+        }
+    }
+    .run
+    .finish
+
+}
diff --git a/scalding/src/test/scala/example/WordCountTest.scala b/scalding/src/test/scala/example/WordCountTest.scala
new file mode 100644
index 0000000..c42770f
--- /dev/null
+++ b/scalding/src/test/scala/example/WordCountTest.scala
@@ -0,0 +1,36 @@
+/*
+Copyright 2012 Twitter, Inc.
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+package com.twitter.scalding
+
+import org.scalatest.{ Matchers, WordSpec }
+
+class WordCountTest extends WordSpec with Matchers {
+  "A WordCount job" should {
+    JobTest(new example.WordCountJob(_))
+      .arg("input", "inputFile")
+      .arg("output", "outputFile")
+      .source(TextLine("inputFile"), List((0, "hack hack hack and hack")))
+      .sink[(String, Int)](TypedTsv[(String, Long)]("outputFile")){ outputBuffer =>
+        val outMap = outputBuffer.toMap
+        "count words correctly" in {
+          outMap("hack") shouldBe 4
+          outMap("and") shouldBe 1
+        }
+      }
+      .run
+      .finish()
+  }
+}
diff --git a/scalding/src/test/scala/sandcrawler/HBaseRowCountTest.scala b/scalding/src/test/scala/sandcrawler/HBaseRowCountTest.scala
new file mode 100644
index 0000000..598f45d
--- /dev/null
+++ b/scalding/src/test/scala/sandcrawler/HBaseRowCountTest.scala
@@ -0,0 +1,59 @@
+package example
+
+import org.junit.runner.RunWith
+import com.twitter.scalding.{JobTest, TupleConversions}
+import org.scalatest.FunSpec
+import org.scalatest.junit.JUnitRunner
+import org.slf4j.LoggerFactory
+import org.apache.hadoop.hbase.io.ImmutableBytesWritable
+import cascading.tuple.{Tuple, Fields}
+import org.apache.hadoop.hbase.util.Bytes
+import scala._
+import com.twitter.scalding.Tsv
+import parallelai.spyglass.hbase.HBaseSource
+import parallelai.spyglass.hbase.HBaseConstants.SourceMode
+
+/**
+ * Example of how to define tests for HBaseSource
+ */
+@RunWith(classOf[JUnitRunner])
+class HBaseRowCountTest extends FunSpec with TupleConversions {
+
+  val output = "/tmp/testOutput"
+
+  val log = LoggerFactory.getLogger(this.getClass.getName)
+
+  val sampleData = List(
+    List("sha1:K2DKSSVTXWPRMFDTWSTCQW3RVWRIOV3Q", "a", "b"),
+    List("sha1:C3YNNEGH5WAG5ZAAXWAEBNXJWT6CZ3WU", "a", "b")
+  )
+
+  JobTest("sandcrawler.HBaseRowCountJob")
+    .arg("test", "")
+    .arg("app.conf.path", "app.conf")
+    .arg("output", output)
+    .arg("debug", "true")
+    .source[Tuple](
+    new HBaseSource(
+      //"table_name",
+      //"quorum_name:2181",
+      "wbgrp-journal-extract-0-qa",
+      "mtrcs-zk1.us.archive.org:2181",
+      new Fields("key"),
+      List("file"),
+      List(new Fields("size", "mimetype")),
+      sourceMode = SourceMode.GET_LIST, keyList = List("sha1:K2DKSSVTXWPRMFDTWSTCQW3RVWRIOV3Q", "sha1:C3YNNEGH5WAG5ZAAXWAEBNXJWT6CZ3WU")),
+      sampleData.map(l => new Tuple(l.map(s => {new ImmutableBytesWritable(Bytes.toBytes(s))}):_*)))
+    .sink[Tuple](Tsv(output format "get_list")) {
+      outputBuffer =>
+        log.debug("Output => " + outputBuffer)
+
+        it("should return the test data provided.") {
+          println("outputBuffer.size => " + outputBuffer.size)
+          assert(outputBuffer.size === 2)
+        }
+    }
+    .run
+    .finish
+
+}