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authorBryan Newbold <bnewbold@archive.org>2019-09-25 17:51:07 -0700
committerBryan Newbold <bnewbold@archive.org>2019-09-25 17:51:07 -0700
commitd7830b4a5aad0a59a588e98798711f0e694d50d6 (patch)
tree7565cbec74584a146b8ee79bb881fa9f78851f60 /python/README.md
parent6e24eec4b6d1861eba37a0a05220b257e829ebbb (diff)
downloadsandcrawler-d7830b4a5aad0a59a588e98798711f0e694d50d6.tar.gz
sandcrawler-d7830b4a5aad0a59a588e98798711f0e694d50d6.zip
refactor old python hadoop code into new directory
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-
-Hadoop streaming map/reduce jobs written in python using the mrjob library.
-
-## Development and Testing
-
-System dependencies on Linux (ubuntu/debian):
-
- sudo apt install -y python3-dev python3-pip python3-wheel libjpeg-dev build-essential
- pip3 install --user pipenv
-
-On macOS (using Homebrew):
-
- brew install libjpeg pipenv
-
-You probably need `~/.local/bin` on your `$PATH`.
-
-Fetch all python dependencies with:
-
- pipenv install --dev
-
-Run the tests with:
-
- pipenv run pytest
-
-Check test coverage with:
-
- pytest --cov --cov-report html
- # open ./htmlcov/index.html in a browser
-
-## Troubleshooting
-
-If you get pipenv errors like:
-
- AttributeError: '_NamespacePath' object has no attribute 'sort'
-
- ----------------------------------------
-
- Command "python setup.py egg_info" failed with error code 1 in /1/tmp/pip-install-h7lb6tqz/proto-google-cloud-datastore-v1/
-
- ☤ ▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉▉ 0/8 — 00:00:03
- bnewbold@bnewbold-dev$
- bnewbold@bnewbold-dev$ pipenv install --deploy --dev
- Installing dependencies from Pipfile.lock (e82980)…
- An error occurred while installing proto-google-cloud-logging-v2==0.91.3! Will try again.
- An error occurred while installing gapic-google-cloud-error-reporting-v1beta1==0.15.3! Will try again.
- An error occurred while installing gapic-google-cloud-datastore-v1==0.15.3! Will try again.
- An error occurred while installing proto-google-cloud-datastore-v1==0.90.4! Will try again.
-
-Then something has gone horribly wrong with your pip/pipenv/python setup. Don't
-have a good workaround yet.
-
-## Running Python Jobs on Hadoop
-
-The `../please` script automates these steps; you should use that instead.
-
-When running python streaming jobs on the actual hadoop cluster, we need to
-bundle along our python dependencies in a virtual env tarball. Building this
-tarball can be done like:
-
- export PIPENV_VENV_IN_PROJECT=1
- pipenv install --deploy
- tar -czf venv-current.tar.gz -C .venv .
-
-### Extraction Task
-
-An example actually connecting to HBase from a local machine, with thrift
-running on a devbox and GROBID running on a dedicated machine:
-
- ./extraction_cdx_grobid.py \
- --hbase-table wbgrp-journal-extract-0-qa \
- --hbase-host wbgrp-svc263.us.archive.org \
- --grobid-uri http://wbgrp-svc096.us.archive.org:8070 \
- tests/files/example.cdx
-
-Running from the cluster (once a ./venv-current.tar.gz tarball exists):
-
- ./extraction_cdx_grobid.py \
- --hbase-table wbgrp-journal-extract-0-qa \
- --hbase-host wbgrp-svc263.us.archive.org \
- --grobid-uri http://wbgrp-svc096.us.archive.org:8070 \
- -r hadoop \
- -c mrjob.conf \
- --archive venv-current.tar.gz#venv \
- hdfs:///user/bnewbold/journal_crawl_cdx/citeseerx_crawl_2017.cdx
-
-### Backfill Task
-
-An example actually connecting to HBase from a local machine, with thrift
-running on a devbox:
-
- ./backfill_hbase_from_cdx.py \
- --hbase-table wbgrp-journal-extract-0-qa \
- --hbase-host wbgrp-svc263.us.archive.org \
- tests/files/example.cdx
-
-Running from the cluster (once a ./venv-current.tar.gz tarball exists):
-
- ./backfill_hbase_from_cdx.py \
- --hbase-host wbgrp-svc263.us.archive.org \
- --hbase-table wbgrp-journal-extract-0-qa \
- -r hadoop \
- -c mrjob.conf \
- --archive venv-current.tar.gz#venv \
- hdfs:///user/bnewbold/journal_crawl_cdx/citeseerx_crawl_2017.cdx