renames

3 files changed, 0 insertions, 265 deletions

diff --git a/hbase_cdx_backfill/Pipfile b/hbase_cdx_backfill/Pipfile
deleted file mode 100644
index 83dc463..0000000
--- a/hbase_cdx_backfill/Pipfile
+++ /dev/null
@@ -1,21 +0,0 @@
-[[source]]
-
-url = "https://pypi.python.org/simple"
-verify_ssl = true
-name = "pypi"
-
-
-[dev-packages]
-
-
-
-[packages]
-
-happybase = "*"
-happybase-mock = "*"
-nose = "*"
-
-
-[requires]
-
-python_version = "3.5"
diff --git a/hbase_cdx_backfill/Pipfile.lock b/hbase_cdx_backfill/Pipfile.lock
deleted file mode 100644
index b525871..0000000
--- a/hbase_cdx_backfill/Pipfile.lock
+++ /dev/null
@@ -1,75 +0,0 @@
-{
-    "_meta": {
-        "hash": {
-            "sha256": "ede8d6f8c246a58f84fffe98979d8c17f624535aba1e23aa0539308859f2ffa1"
-        },
-        "host-environment-markers": {
-            "implementation_name": "cpython",
-            "implementation_version": "3.5.3",
-            "os_name": "posix",
-            "platform_machine": "x86_64",
-            "platform_python_implementation": "CPython",
-            "platform_release": "4.9.0-6-amd64",
-            "platform_system": "Linux",
-            "platform_version": "#1 SMP Debian 4.9.82-1+deb9u3 (2018-03-02)",
-            "python_full_version": "3.5.3",
-            "python_version": "3.5",
-            "sys_platform": "linux"
-        },
-        "pipfile-spec": 6,
-        "requires": {
-            "python_version": "3.5"
-        },
-        "sources": [
-            {
-                "name": "pypi",
-                "url": "https://pypi.python.org/simple",
-                "verify_ssl": true
-            }
-        ]
-    },
-    "default": {
-        "happybase": {
-            "hashes": [
-                "sha256:e20376e2e32291798d2226502994134c1c4e175136d8375b3c517a234fa22481"
-            ],
-            "version": "==1.1.0"
-        },
-        "happybase-mock": {
-            "hashes": [
-                "sha256:327203ff63171a83c9fab34b249636b6a55550041273d2acddc0723433bdf260",
-                "sha256:bd4583551f40e8b7f622ffd462f8e7ed1d34d14d73fa1758f0a5f413b1949f50"
-            ],
-            "version": "==0.9.0"
-        },
-        "nose": {
-            "hashes": [
-                "sha256:dadcddc0aefbf99eea214e0f1232b94f2fa9bd98fa8353711dacb112bfcbbb2a",
-                "sha256:9ff7c6cc443f8c51994b34a667bbcf45afd6d945be7477b52e97516fd17c53ac",
-                "sha256:f1bffef9cbc82628f6e7d7b40d7e255aefaa1adb6a1b1d26c69a8b79e6208a98"
-            ],
-            "version": "==1.3.7"
-        },
-        "ply": {
-            "hashes": [
-                "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce",
-                "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"
-            ],
-            "version": "==3.11"
-        },
-        "six": {
-            "hashes": [
-                "sha256:832dc0e10feb1aa2c68dcc57dbb658f1c7e65b9b61af69048abc87a2db00a0eb",
-                "sha256:70e8a77beed4562e7f14fe23a786b54f6296e34344c23bc42f07b15018ff98e9"
-            ],
-            "version": "==1.11.0"
-        },
-        "thriftpy": {
-            "hashes": [
-                "sha256:309e57d97b5bfa01601393ad4f245451e989d6206a59279e56866b264a99796d"
-            ],
-            "version": "==0.3.9"
-        }
-    },
-    "develop": {}
-}
diff --git a/hbase_cdx_backfill/cdx_fulltext_to_hbase.py b/hbase_cdx_backfill/cdx_fulltext_to_hbase.py
deleted file mode 100755
index 757794a..0000000
--- a/hbase_cdx_backfill/cdx_fulltext_to_hbase.py
+++ /dev/null
@@ -1,169 +0,0 @@
-#!/usr/bin/env python3
-"""
-Streaming Hadoop script to import CDX metadata into the HBase fulltext table,
-primarily for URL-agnostic crawl de-duplication. Takes only "fulltext" file
-formats.
-
-Requires:
-- happybase
-
-TODO:
-- argparse
-- refactor into an object
-- tests in separate file
-- nose tests
-- sentry integration for error reporting
-"""
-
-import sys
-import json
-import happybase
-
-NORMAL_MIME = (
-    'application/pdf',
-    'application/postscript',
-    'text/html',
-    'text/xml',
-    #'application/xml',
-)
-
-def normalize_mime(raw):
-    raw = raw.lower()
-    for norm in NORMAL_MIME:
-        if raw.startswith(norm):
-            return norm
-
-    # Special cases 
-    if raw.startswith('application/xml'):
-        return 'text/xml'
-    if raw.startswith('application/x-pdf'):
-        return 'application/pdf'
-    return None
-
-def test_normalize_mime():
-    assert normalize_mime("asdf") == None
-    assert normalize_mime("application/pdf") == "application/pdf"
-    assert normalize_mime("application/pdf+journal") == "application/pdf"
-    assert normalize_mime("Application/PDF") == "application/pdf"
-    assert normalize_mime("application/p") == None
-    assert normalize_mime("application/xml+stuff") == "text/xml"
-
-def transform_line(raw_cdx):
-
-    cdx = raw_cdx.split()
-    if len(cdx) < 11:
-        return None
-
-    surt = cdx[0]
-    dt = cdx[1]
-    url = cdx[2]
-    mime = normalize_mime(cdx[3])
-    http_status = cdx[4]
-    if http_status != "200":
-        return None
-    key = cdx[5]
-    c_size = cdx[8]
-    offset = cdx[9]
-    warc = cdx[10]
-    info = dict(surt=surt, dt=dt, url=url, c_size=c_size, offset=offset,
-        warc=warc)
-    return {'key': key, 'file:mime': mime, 'file:cdx': info}
-
-def test_transform_line():
-
-    raw = "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf 20170828233154 https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf application/pdf 200 WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G - - 210251 931661233 SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz"
-    correct = {
-        'key': "WL3FEA62TEU4F52Y5DOVQ62VET4QJW7G",
-        'file:mime': "application/pdf",
-        'file:cdx': {
-            'surt': "edu,upenn,ldc)/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
-            'url': "https://www.ldc.upenn.edu/sites/www.ldc.upenn.edu/files/medar2009-large-arabic-broadcast-collection.pdf",
-            'dt': "20170828233154",
-            'warc': "SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828231135742-00000-00009-wbgrp-svc284/SEMSCHOLAR-PDF-CRAWL-2017-08-04-20170828232253025-00005-3480~wbgrp-svc284.us.archive.org~8443.warc.gz",
-            'offset': "931661233",
-            'c_size': "210251",
-        }
-    }
-
-    assert transform_line(raw) == correct
-    assert transform_line(raw + "\n") == correct
-    assert transform_line(raw + " extra_field") == correct
-
-
-def run(in_lines, out_lines, status_lines, table, mime_filter=None):
-
-    if mime_filter is None:
-        mime_filter = ['application/pdf']
-    count_skip = count_invalid = count_fail = count_success = 0
-
-    for raw_cdx in in_lines.readlines():
-        if (raw_cdx.startswith(' ') or raw_cdx.startswith('filedesc') or
-                raw_cdx.startswith('#')):
-            # Skip line
-            count_skip += 1
-            continue
-
-        info = transform_line(raw_cdx)
-        if info is None:
-            count_invalid += 1
-            continue
-        if info['file:mime'] not in mime_filter:
-            count_skip += 1
-            continue
-
-        key = info.pop('key')
-        info['file:cdx'] = json.dumps(info['file:cdx'], sort_keys=True,
-            indent=None)
-        try:
-            table.put(key, info)
-            count_success += 1
-        except:
-            status_lines.write("ERROR\n") # TODO:
-            count_fail += 1
-
-    status_lines.write('\n')
-    status_lines.write('skip\t{}\n'.format(count_skip))
-    status_lines.write('invalid\t{}\n'.format(count_invalid))
-    status_lines.write('fail\t{}\n'.format(count_fail))
-    status_lines.write('success\t{}\n'.format(count_success))
-
-
-def test_run():
-    
-    import io 
-    import happybase_mock
-
-    out = io.StringIO()
-    status = io.StringIO()
-    raw = io.StringIO("""
-com,sagepub,cep)/content/28/9/960.full.pdf 20170705062200 http://cep.sagepub.com/content/28/9/960.full.pdf application/pdf 301 3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ - - 401 313356621 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-eu,eui,cadmus)/bitstream/handle/1814/36635/rscas_2015_03.pdf;jsessionid=761393014319a39f40d32ae3eb3a853f?sequence=1 20170705062202 http://cadmus.eui.eu/bitstream/handle/1814/36635/RSCAS_2015_03.pdf%3Bjsessionid%3D761393014319A39F40D32AE3EB3A853F?sequence%3D1 application/PDF 200 MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J - - 854156 328850624 CITESEERX-CRAWL-2017-06-20-20170705061647307-00039-00048-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705062052659-00043-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-com,pbworks,educ333b)/robots.txt 20170705063311 http://educ333b.pbworks.com/robots.txt text/plain 200 6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD - - 638 398190140 CITESEERX-CRAWL-2017-06-20-20170705062707827-00049-00058-wbgrp-svc284/CITESEERX-CRAWL-2017-06-20-20170705063158203-00053-31209~wbgrp-svc284.us.archive.org~8443.warc.gz
-""")
-
-    conn = happybase_mock.Connection()
-    conn.create_table('wbgrp-journal-extract-test', {'file': {}, 'grobid0': {}})
-
-    table = conn.table('wbgrp-journal-extract-test')
-    run(raw, out, status, table)
-
-    print(status.getvalue())
-
-    assert table.row(b'1') == {}
-    # HTTP 301
-    assert table.row(b'3I42H3S6NNFQ2MSVX7XZKYAYSCX5QBYJ') == {}
-    # valid
-    assert table.row(b'MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J') != {}
-    # text/plain
-    assert table.row(b'6VAUYENMOU2SK2OWNRPDD6WTQTECGZAD') == {}
-
-    row = table.row(b'MPCXVWMUTRUGFP36SLPHKDLY6NGU4S3J')
-    assert row[b'file:mime'] == b"application/pdf"
-    json.loads(row[b'file:cdx'].decode('utf-8'))
-
-if __name__=="__main__":
-    hb = happybase.Connection(host='')
-    with hb.connection() as conn:
-        table = conn.table('wbgrp-journal-extract-0-qa')
-        run(sys.stdin, sys.stdout, sys.stderr, table)
-