SQL commands for re-trying PDF ingests

1 files changed, 158 insertions, 0 deletions

diff --git a/sql/ingest_again.md b/sql/ingest_again.md
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index 0000000..3b4b990
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+++ b/sql/ingest_again.md
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+
+## re-ingest some broken
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'spn2-%'
+            AND ingest_file_result.status != 'spn2-error:invalid-url-syntax'
+            AND ingest_file_result.status != 'spn2-error:spn2-error:filesize-limit'
+    ) TO '/grande/snapshots/reingest_spn2-error_current.rows.json';
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'cdx-error'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+            AND (ingest_request.ingest_request_source = 'fatcat-changelog'
+                 OR ingest_request.ingest_request_source = 'fatcat-ingest')
+    ) TO '/grande/snapshots/reingest_cdx-error_current.rows.json';
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'cdx-error'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+            AND (ingest_request.ingest_request_source != 'fatcat-changelog'
+                 AND ingest_request.ingest_request_source != 'fatcat-ingest')
+    ) TO '/grande/snapshots/reingest_cdx-error_bulk_current.rows.json';
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'wayback-error'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+    ) TO '/grande/snapshots/reingest_wayback-error_current.rows.json';
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'gateway-timeout'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+            AND (ingest_request.ingest_request_source = 'fatcat-changelog'
+                 OR ingest_request.ingest_request_source = 'fatcat-ingest')
+    ) TO '/grande/snapshots/reingest_gateway-timeout.rows.json';
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.hit = false
+            AND ingest_file_result.status like 'petabox-error'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '12 day'::INTERVAL
+            AND (ingest_request.ingest_request_source = 'fatcat-changelog'
+                 OR ingest_request.ingest_request_source = 'fatcat-ingest')
+    ) TO '/grande/snapshots/reingest_petabox-error_current.rows.json';
+
+Transform:
+
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_spn2-error_current.rows.json | shuf > reingest_spn2-error_current.json
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_cdx-error_current.rows.json | shuf > reingest_cdx-error_current.json
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_cdx-error_bulk_current.rows.json | shuf > reingest_cdx-error_bulk_current.json
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_wayback-error_current.rows.json | shuf > reingest_wayback-error_current.json
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_gateway-timeout.rows.json | shuf > reingest_gateway-timeout.json
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_petabox-error_current.rows.json | shuf > reingest_petabox-error_current.json
+
+Push to kafka (shuffled):
+
+    cat reingest_spn2-error_current.json reingest_cdx-error_current.json reingest_wayback-error_current.json reingest_petabox-error_current.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+
+    cat reingest_gateway-timeout.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p 0
+
+    cat reingest_cdx-error_bulk_current.json | shuf | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests-bulk -p -1
+
+Push to kafka (not shuffled):
+
+    cat reingest_spn2-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+    cat reingest_cdx-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+    cat reingest_cdx-error_bulk_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests-bulk -p -1
+    cat reingest_wayback-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+    cat reingest_gateway-timeout.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+    cat reingest_petabox-error_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+
+## just recent fatcat-ingest
+
+    COPY (
+        SELECT row_to_json(ingest_request.*) FROM ingest_request
+        LEFT JOIN ingest_file_result ON ingest_file_result.base_url = ingest_request.base_url
+        WHERE ingest_request.ingest_type = 'pdf'
+            AND ingest_file_result.ingest_type = 'pdf'
+            AND ingest_file_result.updated < NOW() - '1 hour'::INTERVAL
+            -- AND ingest_file_result.updated > NOW() - '24 hour'::INTERVAL
+            AND ingest_file_result.updated > NOW() - '7 day'::INTERVAL
+            AND ingest_file_result.hit = false
+            AND (ingest_file_result.status like 'spn2-%'
+                 OR ingest_file_result.status like 'cdx-error'
+                 OR ingest_file_result.status like 'gateway-timeout'
+                 OR ingest_file_result.status like 'wayback-error'
+            )
+            AND ingest_file_result.status != 'spn2-error:invalid-url-syntax'
+            AND ingest_file_result.status != 'spn2-error:spn2-error:filesize-limit'
+            AND ingest_request.ingest_request_source = 'fatcat-ingest'
+    ) TO '/grande/snapshots/reingest_fatcat_current.rows.json';
+
+    # note: shuf
+    ./scripts/ingestrequest_row2json.py /grande/snapshots/reingest_fatcat_current.rows.json | shuf > reingest_fatcat_current.json
+
+    cat reingest_fatcat_current.json | jq . -c | kafkacat -P -b wbgrp-svc263.us.archive.org -t sandcrawler-prod.ingest-file-requests -p -1
+
+## specific domains
+
+protocols.io:
+
+    SELECT ingest_file_result.ingest_type, ingest_file_result.status, COUNT(*)
+    FROM ingest_file_result
+    LEFT JOIN ingest_request
+        ON ingest_file_result.ingest_type = ingest_request.ingest_type
+        AND ingest_file_result.base_url = ingest_request.base_url
+    WHERE ingest_request.ingest_type = 'pdf'
+        AND ingest_request.base_url LIKE '%10.17504/protocols.io%'
+    GROUP BY ingest_file_result.ingest_type, ingest_file_result.status
+    ORDER BY COUNT DESC
+    LIMIT 20;
+
+biorxiv/medrxiv:
+
+    SELECT ingest_file_result.ingest_type, ingest_file_result.status, COUNT(*)
+    FROM ingest_file_result
+    LEFT JOIN ingest_request
+        ON ingest_file_result.ingest_type = ingest_request.ingest_type
+        AND ingest_file_result.base_url = ingest_request.base_url
+    WHERE ingest_request.ingest_type = 'pdf'
+        AND ingest_request.base_url LIKE '%10.1101/20%'
+    GROUP BY ingest_file_result.ingest_type, ingest_file_result.status
+    ORDER BY COUNT DESC
+    LIMIT 20;