// skate-from-unstructured tries to parse various pieces of information from // the unstructured field in refs. package main import ( "flag" "log" "os" "regexp" "runtime" "strings" "git.archive.org/martin/cgraph/skate" "git.archive.org/martin/cgraph/skate/parallel" json "github.com/segmentio/encoding/json" ) var ( numWorkers = flag.Int("w", runtime.NumCPU(), "number of workers") batchSize = flag.Int("b", 100000, "batch size") bytesNewline = []byte("\n") PatDOI = regexp.MustCompile(`10[.][0-9]{1,8}/[^ ]*[\w]`) PatDOINoHyphen = regexp.MustCompile(`10[.][0-9]{1,8}/[^ -]*[\w]`) PatArxivPDF = regexp.MustCompile(`http://arxiv.org/pdf/([0-9]{4,4}[.][0-9]{1,8})(v[0-9]{1,2})?(.pdf)?`) PatArxivAbs = regexp.MustCompile(`http://arxiv.org/abs/([0-9]{4,4}[.][0-9]{1,8})(v[0-9]{1,2})?(.pdf)?`) ) func main() { pp := parallel.NewProcessor(os.Stdin, os.Stdout, func(p []byte) ([]byte, error) { var ref skate.Ref if err := json.Unmarshal(p, &ref); err != nil { return nil, err } if err := parseUnstructured(&ref); err != nil { return nil, err } return skate.JsonMarshalLine(&ref) }) pp.NumWorkers = *numWorkers pp.BatchSize = *batchSize if err := pp.Run(); err != nil { log.Fatal(err) } } // parseUnstructured will in-place augment missing DOI, arxiv id and so on. func parseUnstructured(ref *skate.Ref) error { uns := ref.Biblio.Unstructured var ( v string vs []string ) // Handle things like: 10.1111/j.1550-7408.1968.tb02138.x-BIB5|cit5, // 10.1111/j.1558-5646.1997.tb02431.x-BIB0008|evo02431-cit-0008, ... if strings.Contains(strings.ToLower(ref.Key), "-bib") && ref.Biblio.DOI == "" { parts := strings.Split(strings.ToLower(ref.Key), "-bib") ref.Biblio.DOI = parts[0] } // DOI v = PatDOI.FindString(uns) if v != "" && ref.Biblio.DOI == "" { ref.Biblio.DOI = v } // DOI in Key v = PatDOINoHyphen.FindString(ref.Key) if v != "" && ref.Biblio.DOI == "" { ref.Biblio.DOI = v } // DOI in URL prefixes := []string{"http://doi.org/", "https://doi.org/", "http://dx.doi.org/", "https://dx.doi.org/"} for _, prefix := range prefixes { if ref.Biblio.DOI != "" && strings.HasPrefix(ref.Biblio.Url, prefix) { ref.Biblio.DOI = strings.Replace(ref.Biblio.Url, prefix, "", -1) } } v = PatDOINoHyphen.FindString(ref.Key) if v != "" && ref.Biblio.DOI == "" { ref.Biblio.DOI = v } // Arxiv vs = PatArxivPDF.FindStringSubmatch(uns) if len(vs) != 0 && ref.Biblio.ArxivId == "" { ref.Biblio.ArxivId = vs[1] } else { vs = PatArxivAbs.FindStringSubmatch(uns) if len(vs) != 0 && ref.Biblio.ArxivId == "" { ref.Biblio.ArxivId = vs[1] } } return nil }