From e35ad2d4d393318bd36fcee43995bd3bc2989619 Mon Sep 17 00:00:00 2001 From: Martin Czygan Date: Thu, 5 Aug 2021 09:59:07 +0200 Subject: tasks: fix command --- python/refcat/tasks.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'python') diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index 908f209..573ec74 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -449,8 +449,8 @@ class BrefDOITable(Refcat): output = shellout(""" zstdcat -T0 {input} | parallel --block 10M -j 20 --pipe - "jq -rc '[.source_release_ident, .target_release_ident, .source_doi, .target_doi] | @tsv' - | zstd -c -T0 > {output} + "jq -rc '[.source_release_ident, .target_release_ident, .source_doi, .target_doi] | @tsv'" | + zstd -c -T0 > {output} """, input=self.input().path) luigi.LocalTarget(output).move(self.output().path) -- cgit v1.2.3