From b615ceda545b04e89165ac2f8f069c694a3c24b1 Mon Sep 17 00:00:00 2001
From: Martin Czygan <martin.czygan@gmail.com>
Date: Fri, 14 May 2021 12:18:58 +0200
Subject: we do not want empty keys
---
python/refcat/tasks.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
(limited to 'python')
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py
index 530eb6a..ec4d8a2 100644
--- a/python/refcat/tasks.py
+++ b/python/refcat/tasks.py
@@ -331,7 +331,7 @@ class RefsDOI(Refcat):
output = shellout("""
zstdcat -T0 {input} |
skate-map -m ff -x biblio.doi -skip-on-empty 1 |
- skate-cleanup -c doi -f 1 |
+ skate-cleanup -S -c doi -f 1 |
LC_ALL=C sort -T {tmpdir} -k1,1 -S25% --parallel 4 |
zstd -T0 -c > {output}
""",
@@ -446,7 +446,7 @@ class FatcatDOI(Refcat):
output = shellout("""
zstdcat -T0 {input} |
skate-map -m ff -x ext_ids.doi -skip-on-empty 1 |
- skate-cleanup -c doi -f 1 |
+ skate-cleanup -S -c doi -f 1 |
LC_ALL=C sort -T {tmpdir} -k1,1 -S25% --parallel 4 |
zstd -T0 -c > {output}
""",
--
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