From 5739027a0ee1982474fdbc7ff00d5ee52a497caa Mon Sep 17 00:00:00 2001 From: Martin Czygan Date: Thu, 22 Apr 2021 23:05:28 +0200 Subject: add 10k cdx sample --- extra/cdx/README.md | 6 + extra/cdx/cdx_query.py | 57 + extra/cdx/sample.tsv | 10000 ++++++++++++++++++++++++++++++++++ extra/cdx/sample_no_doi.tsv | 10000 ++++++++++++++++++++++++++++++++++ extra/cdx/sample_no_doi_results.tsv | 9923 +++++++++++++++++++++++++++++++++ extra/cdx/sample_results.tsv | 9951 +++++++++++++++++++++++++++++++++ 6 files changed, 39937 insertions(+) create mode 100644 extra/cdx/README.md create mode 100644 extra/cdx/cdx_query.py create mode 100644 extra/cdx/sample.tsv create mode 100644 extra/cdx/sample_no_doi.tsv create mode 100644 extra/cdx/sample_no_doi_results.tsv create mode 100644 extra/cdx/sample_results.tsv (limited to 'extra/cdx') diff --git a/extra/cdx/README.md b/extra/cdx/README.md new file mode 100644 index 0000000..8c95021 --- /dev/null +++ b/extra/cdx/README.md @@ -0,0 +1,6 @@ +# Sample CDX Links + +Given a sample from outbound web links from publications, determine number of +URLs we may have. We currently find about 44368911 URLs in the refs. + +Limit to 10000 links. diff --git a/extra/cdx/cdx_query.py b/extra/cdx/cdx_query.py new file mode 100644 index 0000000..9b7a1f0 --- /dev/null +++ b/extra/cdx/cdx_query.py @@ -0,0 +1,57 @@ +#!/usr/bin/env python + +# http://web.archive.org/cdx/search/cdx?url=http://www.cell.com/current-biology/abstract/S0960-9822x +# com,cell)/current-biology/abstract/s0960-9822 20170602053046 http://www.cell.com/current-biology/abstract/S0960-9822 text/html 404 7WYMCJSIU4CDPQAQ7Y7547EA6FXPRVBV 9747 + +import fileinput +import collections +import requests +import sys + +Cdx = collections.namedtuple("Cdx", "surt date url mime status hash size") + + +def parse_cdx_lines(blob): + result = [] + lines = blob.split("\n") + cutoff = ["access", "Access", "abgeruf", "aufgeruf"] + for line in lines: + for c in cutoff: + if c in line: + line = line[:line.index(c)] + break + fields = line.strip().split() + if len(fields) == 0: + continue + cdx = Cdx(*fields) + result.append(cdx) + result = sorted(result, key=lambda cdx: cdx.date, reverse=True) + result = list(filter(lambda cdx: cdx.status in ("200", "301", "302", "303"), result)) + return result + +def main(): + stats = collections.Counter() + for line in fileinput.input(): + line = line.strip() + r = requests.get("http://web.archive.org/cdx/search/cdx?url={}".format(line)) + if not r.ok: + continue + try: + cdx_lines = parse_cdx_lines(r.text) + except TypeError: + stats["parse_failed"] += 1 + print("failed to parse cdx: {}".format(line), file=sys.stderr) + continue + if len(cdx_lines) == 0: + stats["missing"] += 1 + print("MISS\tNA\t{}".format(line)) + else: + stats["ok"] += 1 + print("OK\t{}\t{}".format(cdx_lines[0].date, line)) + + + return stats + +if __name__ == '__main__': + stats = main() + print(stats) diff --git a/extra/cdx/sample.tsv b/extra/cdx/sample.tsv new file mode 100644 index 0000000..b9640c6 --- /dev/null +++ b/extra/cdx/sample.tsv @@ -0,0 +1,10000 @@ 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