diff options
Diffstat (limited to 'python')
| -rw-r--r-- | python/refcat/techreport.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/python/refcat/techreport.py b/python/refcat/techreport.py index 48c1084..beb0500 100644 --- a/python/refcat/techreport.py +++ b/python/refcat/techreport.py @@ -39,7 +39,8 @@ class BrefDOIOnly(Refcat): def run(self): output = shellout(r""" zstdcat -T0 {input} | - parallel --pipe -j 16 --block 10M "jq -rc '[.source_doi, .target_doi] | @csv'" | + parallel --pipe -j 16 --block 10M "jq -rc '[.source_doi, .target_doi] | @tsv'" | + tr ' ' ',' | perl -F, -lane 'printf qq[%s\n], join ",", sort @F' | zstd -c -T0 > {output} """, |