diff options
| -rw-r--r-- | python/refcat/tasks.py | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/python/refcat/tasks.py b/python/refcat/tasks.py index a67e430..a471b1e 100644 --- a/python/refcat/tasks.py +++ b/python/refcat/tasks.py @@ -803,6 +803,7 @@ class UnmatchedMapped(Refcat): def run(self): output = shellout(""" zstdcat -T0 {input} | + skate-conf -f ref | skate-map -m cns -skip-on-empty 1 | LC_ALL=C sort -T {tmpdir} -S25% -k1,1 --parallel 4 | zstd -T0 -c > {output} |