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import xml
import json
import pytest
from grobid_tei_xml.grobid2json import teixml2json
def test_small_xml():
with open('tests/files/small.xml', 'r') as f:
tei_xml = f.read()
with open('tests/files/small.json', 'r') as f:
json_form = json.loads(f.read())
parsed = teixml2json(tei_xml)
for i in range(len(parsed['citations'])):
assert parsed['citations'][i] == json_form['citations'][i]
assert teixml2json(tei_xml) == json_form
def test_invalid_xml():
with pytest.raises(xml.etree.ElementTree.ParseError):
teixml2json("this is not XML")
with pytest.raises(ValueError):
teixml2json("<xml></xml>")
def test_grobid_teixml2json() -> None:
with open("tests/files/example_grobid.tei.xml", "r") as f:
blob = f.read()
obj = teixml2json(blob, True)
assert (
obj["title"]
== "Changes of patients' satisfaction with the health care services in Lithuanian Health Promoting Hospitals network"
)
ref = [c for c in obj["citations"] if c["id"] == "b12"][0]
assert ref["authors"][0] == {"given_name": "K", "name": "K Tasa", "surname": "Tasa"}
assert ref["journal"] == "Quality Management in Health Care"
assert ref["title"] == "Using patient feedback for quality improvement"
assert ref["date"] == "1996"
assert ref["pages"] == "206-225"
assert ref["volume"] == "8"
assert (
ref["unstructured"]
== "Tasa K, Baker R, Murray M. Using patient feedback for qua- lity improvement. Quality Management in Health Care 1996;8:206-19."
)
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