From 8cd8204a7464968280f9c72105edc585c2cf0a4f Mon Sep 17 00:00:00 2001 From: Martin Czygan Date: Wed, 25 Nov 2020 11:44:31 +0100 Subject: add more test cases --- tests/data/README.md | 38 + tests/data/release/2gpvznjjcfbmhats6ot2vsodju | 528 +++++++ tests/data/release/5lk635o65nc2tnkus3pkf2ggeq | 47 + tests/data/release/75ky5xniobchzbhzwhmwhu5uoa | 252 ++++ tests/data/release/byh7xr5qhjca3bw53ivdotck3e | 1936 +++++++++++++++++++++++++ tests/data/release/hqrvhbvocvaabg6nr5p43tl3uq | 72 + tests/data/release/jdtngtiz3bdqboypujoni2x3ry | 1936 +++++++++++++++++++++++++ tests/data/release/qk6arua2snaobfvdvlfvjp3yeq | 426 ++++++ tests/data/release/uvgwfvwnnbg7xchy63bloyrwvi | 65 + tests/data/release/zfwf3tefajc6zdxa47vgilm7wm | 33 + tests/data/verify.csv | 6 + tests/test_cluster.py | 9 +- tests/test_utils.py | 3 +- tests/test_verify.py | 12 +- 14 files changed, 5357 insertions(+), 6 deletions(-) create mode 100644 tests/data/release/2gpvznjjcfbmhats6ot2vsodju create mode 100644 tests/data/release/5lk635o65nc2tnkus3pkf2ggeq create mode 100644 tests/data/release/75ky5xniobchzbhzwhmwhu5uoa create mode 100644 tests/data/release/byh7xr5qhjca3bw53ivdotck3e create mode 100644 tests/data/release/hqrvhbvocvaabg6nr5p43tl3uq create mode 100644 tests/data/release/jdtngtiz3bdqboypujoni2x3ry create mode 100644 tests/data/release/qk6arua2snaobfvdvlfvjp3yeq create mode 100644 tests/data/release/uvgwfvwnnbg7xchy63bloyrwvi create mode 100644 tests/data/release/zfwf3tefajc6zdxa47vgilm7wm (limited to 'tests') diff --git a/tests/data/README.md b/tests/data/README.md index 4788f1b..42ea394 100644 --- a/tests/data/README.md +++ b/tests/data/README.md @@ -15,3 +15,41 @@ If you add lines to this file, the test suite will pick it up automatically. 7kzrmoajzzedxgdvbltgqihszu,bd4crw4p7ber7pzhpoyw2c77bi,Status.STRONG,OK.SLUG_TITLE_AUTHOR_MATCH, ``` +## Helpers + +Going from a query to the combination of idents (with +[esdump](https://github.com/miku/esdump), [jq](https://stedolan.github.io/jq/), +[makecomb.py](https://gist.github.com/miku/c1220715060babc2374a440bd742a410): + +``` +$ esdump -q '"Calcifying+extracellular+mucus+substances"' | \ + jq -rC '.hits.hits[]._id' | makecomb.py | awk '{print $1","$2}' + +5lk635o65nc2tnkus3pkf2ggeq,hqrvhbvocvaabg6nr5p43tl3uq +5lk635o65nc2tnkus3pkf2ggeq,zfwf3tefajc6zdxa47vgilm7wm +hqrvhbvocvaabg6nr5p43tl3uq,zfwf3tefajc6zdxa47vgilm7wm +``` + +Where `makecomb.py` turns lines into pairs. + +``` +$ curl -sL https://git.io/JkDwC > ~/bin/makecomb.py && chmod +x ~/bin/makecomb.py +``` + +Short script. + +```python +#!/usr/bin/env python +import fileinput +import itertools + +vs = set() +for line in fileinput.input(): + line = line.strip() + if not line: + continue + vs.add(line) + +for a, b in itertools.combinations(sorted(vs), r=2): + print("{}\t{}".format(a, b)) +``` diff --git a/tests/data/release/2gpvznjjcfbmhats6ot2vsodju b/tests/data/release/2gpvznjjcfbmhats6ot2vsodju new file mode 100644 index 0000000..6c059f4 --- /dev/null +++ b/tests/data/release/2gpvznjjcfbmhats6ot2vsodju @@ -0,0 +1,528 @@ +{ + "abstracts": [], + "container_id": "svonp2abyrgxpazsjvkpnfeiou", + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "Janet Fulk", + "role": "author" + }, + { + "index": 1, + "raw_name": "Andrew J. 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L." + ], + "volume-title": "The knowledge link: How firms compete through strategic alliances" + }, + "index": 0, + "key": "b1_160", + "year": 1991 + }, + { + "container_name": "Group process, group decision, group action", + "extra": { + "authors": [ + "Baron R. S." + ], + "volume-title": "Group process, group decision, group action" + }, + "index": 1, + "key": "b2_161", + "year": 1992 + }, + { + "container_name": "Rational man and irrational society", + "extra": { + "authors": [ + "Barry B." + ], + "volume-title": "Rational man and irrational society" + }, + "index": 2, + "key": "b3_162", + "year": 1982 + }, + { + "container_name": "Communication and organizations: An interpretive approach", + "extra": { + "authors": [ + "Bormann E. G." + ], + "volume-title": "Communication and organizations: An interpretive approach" + }, + "index": 3, + "key": "b4_163", + "locator": "99", + "year": 1983 + }, + { + "container_name": "Globalization, technology, and competition: The fusion of computers and telecommunications in the 1990s", + "extra": { + "authors": [ + "Bradley S. P." + ], + "volume-title": "Globalization, technology, and competition: The fusion of computers and telecommunications in the 1990s" + }, + "index": 4, + "key": "b5_164", + "year": 1993 + }, + { + "container_name": "Drugs, crime, and the justice system", + "extra": { + "authors": [ + "Bureau of Justice Statistics" + ], + "volume-title": "Drugs, crime, and the justice system" + }, + "index": 5, + "key": "b6_165", + "year": 1992 + }, + { + "container_name": "Multijurisdictional drug enforcement strategies: Reducing supply and demand", + "extra": { + "authors": [ + "Chaiken J." + ], + "volume-title": "Multijurisdictional drug enforcement strategies: Reducing supply and demand" + }, + "index": 6, + "key": "b7_166", + "year": 1990 + }, + { + "container_name": "Political Science Review", + "extra": { + "authors": [ + "Chamberlain J." + ], + "volume": "68" + }, + "index": 7, + "key": "b8_167", + "locator": "707", + "year": 1974 + }, + { + "extra": { + "doi": "10.2307/2392088" + }, + "index": 8, + "key": "b9_168" + }, + { + "container_name": "Organizations and communication technology", + "extra": { + "authors": [ + "Connolly T." + ], + "doi": "10.4135/9781483325385.n10", + "volume-title": "Organizations and communication technology" + }, + "index": 9, + "key": "b10_169", + "locator": "219", + "year": 1990 + }, + { + "container_name": "Macro-micro linkages in sociology", + "extra": { + "authors": [ + "Cook K. S." + ], + "volume-title": "Macro-micro linkages in sociology" + }, + "index": 10, + "key": "b11_170", + "locator": "29", + "year": 1991 + }, + { + "container_name": "Morality, rationality. and efficiency: Perspectives on socio-economics", + "extra": { + "authors": [ + "Dawes R. M." + ], + "volume": "1990", + "volume-title": "Morality, rationality. and efficiency: Perspectives on socio-economics" + }, + "index": 11, + "key": "b12_171", + "locator": "17", + "year": 1991 + }, + { + "container_name": "Social exchange theory: The two traditions", + "extra": { + "authors": [ + "Ekeh P. P." + ], + "volume-title": "Social exchange theory: The two traditions" + }, + "index": 12, + "key": "b13_172", + "year": 1974 + }, + { + "container_name": "Management Science", + "extra": { + "authors": [ + "Flood M." + ] + }, + "index": 13, + "key": "b14_173", + "year": 1958 + }, + { + "container_name": "Journal of Change Management", + "extra": { + "authors": [ + "Fulk J." + ], + "doi": "10.1108/eb025597" + }, + "index": 14, + "key": "b15_174", + "locator": "21", + "year": 1988 + }, + { + "container_name": "Communication and class struggle", + "extra": { + "authors": [ + "Habermas J." + ], + "volume-title": "Communication and class struggle" + }, + "index": 15, + "key": "b16_175", + "locator": "198", + "year": 1979 + }, + { + "container_name": "Communication and organizational control: Cybernetics in health and welfare organizations", + "extra": { + "authors": [ + "Hage J." + ], + "volume-title": "Communication and organizational control: Cybernetics in health and welfare organizations" + }, + "index": 16, + "key": "b17_176", + "year": 1974 + }, + { + "container_name": "Collective action", + "extra": { + "authors": [ + "Hardin R." + ], + "volume-title": "Collective action" + }, + "index": 17, + "key": "b18_177", + "year": 1982 + }, + { + "container_name": "Modern fiscal issues: Essays in honour of Carl S. Shoup", + "extra": { + "authors": [ + "Head J. G." + ], + "volume-title": "Modern fiscal issues: Essays in honour of Carl S. Shoup" + }, + "index": 18, + "key": "b19_178", + "year": 1972 + }, + { + "container_name": "Organizations and communication technology", + "extra": { + "authors": [ + "Markus M. L." + ], + "doi": "10.4135/9781483325385.n9", + "volume-title": "Organizations and communication technology" + }, + "index": 19, + "key": "b20_179", + "locator": "194", + "year": 1990 + }, + { + "container_name": "CSCW Proceedings", + "extra": { + "authors": [ + "Markus M. L." + ], + "doi": "10.1145/99332.99368", + "volume": "90" + }, + "index": 20, + "key": "b21_180", + "locator": "371", + "year": 1990 + }, + { + "container_name": "Research in Social Movements, Conflict and Change", + "extra": { + "authors": [ + "Marwell G." + ] + }, + "index": 21, + "key": "b22_181", + "year": 1984 + }, + { + "container_name": "The critical mass in collective action", + "extra": { + "authors": [ + "Marwell G." + ], + "doi": "10.1017/cbo9780511663765", + "volume-title": "The critical mass in collective action" + }, + "index": 22, + "key": "b23_182", + "year": 1993 + }, + { + "container_name": "Handbook of communication science", + "extra": { + "authors": [ + "McQuail D." + ], + "volume-title": "Handbook of communication science" + }, + "index": 23, + "key": "b24_183", + "locator": "327", + "year": 1987 + }, + { + "container_name": "Organization Science", + "extra": { + "authors": [ + "Monge P. R." + ] + }, + "index": 24, + "key": "b25_184", + "locator": "406", + "year": 1990 + }, + { + "container_name": "Mastering organizational change", + "extra": { + "authors": [ + "Monge P. R." + ], + "volume-title": "Mastering organizational change" + }, + "index": 25, + "key": "b26_185", + "locator": "323", + "year": 1993 + }, + { + "container_name": "Annual Review of Sociology", + "extra": { + "authors": [ + "Oliver P. E." + ], + "volume": "19" + }, + "index": 26, + "key": "b27_186", + "locator": "271", + "year": 1993 + }, + { + "container_name": "American Sociological Review", + "extra": { + "authors": [ + "Oliver P." + ], + "volume": "49" + }, + "index": 27, + "key": "b28_187", + "locator": "601", + "year": 1988 + }, + { + "extra": { + "doi": "10.1086/228313" + }, + "index": 28, + "key": "b29_188" + }, + { + "container_name": "The logic of collective action", + "extra": { + "authors": [ + "Olson M." + ], + "volume-title": "The logic of collective action" + }, + "index": 29, + "key": "b30_189", + "year": 1965 + }, + { + "container_name": "Office Administration and Automation", + "extra": { + "authors": [ + "Panko R." + ], + "volume": "45" + }, + "index": 30, + "key": "b31_190", + "locator": "37", + "year": 1984 + }, + { + "container_name": "Communication Research", + "extra": { + "authors": [ + "Rafaeli S." + ], + "volume": "20" + }, + "index": 31, + "key": "b32_191", + "locator": "277", + "year": 1993 + }, + { + "extra": { + "doi": "10.2307/1925895" + }, + "index": 32, + "key": "b33_192" + }, + { + "container_name": "The Public Electronic Network (PEN) and the Homeless in Santa Monica", + "extra": { + "authors": [ + "Schmitz J." + ], + "volume-title": "The Public Electronic Network (PEN) and the Homeless in Santa Monica" + }, + "index": 33, + "key": "b34_193", + "year": 1993 + }, + { + "container_name": "The telecommunication revolution", + "extra": { + "authors": [ + "Sirbu M. A." + ], + "volume-title": "The telecommunication revolution" + }, + "index": 34, + "key": "b35_194", + "locator": "140", + "year": 1992 + }, + { + "container_name": "American Sociological Review", + "extra": { + "authors": [ + "Stoke J. F." + ], + "volume": "52" + }, + "index": 35, + "key": "b36_195", + "locator": "778", + "year": 1987 + }, + { + "extra": { + "doi": "10.1016/0049-089x(73)90004-5" + }, + "index": 36, + "key": "b37_196" + }, + { + "container_name": "Journal of Communication", + "extra": { + "authors": [ + "Valente T. W." + ], + "volume": "43" + }, + "index": 37, + "key": "b38_197", + "locator": "30", + "year": 1993 + }, + { + "container_name": "Theory of games and economic behavior", + "extra": { + "authors": [ + "Neumann J." + ], + "volume-title": "Theory of games and economic behavior" + }, + "index": 38, + "key": "b39_198", + "year": 1944 + } + ], + "release_stage": "published", + "release_type": "article-journal", + "release_year": 1996, + "revision": "2c010b0c-e219-4cf2-b003-6c344d24ae6b", + "state": "active", + "title": "Connective and Communal Public Goods in Interactive Communication Systems", + "work_id": "dpl6okdbtvd2zonhn3w3xp3v7i" +} diff --git a/tests/data/release/5lk635o65nc2tnkus3pkf2ggeq b/tests/data/release/5lk635o65nc2tnkus3pkf2ggeq new file mode 100644 index 0000000..773e63f --- /dev/null +++ b/tests/data/release/5lk635o65nc2tnkus3pkf2ggeq @@ -0,0 +1,47 @@ +{ + "abstracts": [ + { + "content": "Colonial non-zooxanthellate corals from deep-water coral reefs, Lophelia pertusa and Madrepora oculata, produce large amounts of extracellular mucus (EMS). This mucus has various functions, e.g., an antifouling capability protecting the coral skeleton from attacks of endolithic and boring organisms. Both corals show thick epithecal and exothecal skeletal parts with a clear lamellar growth pattern. The formation of the epitheca is unclear. It is supposed that the EMS play a central role during the calcification process of the epithecal skeletal parts. Staining with the fluorochrome tetracycline has shown an enrichment of Ca2+ ions in the mucus. In order to investigate this hypothesis, the protein content of the mucus and the intracrystalline organic matter from newly formed epithecal aragonite of Madrepora oculata was determined via sodium dodecyl sulfate (SDS) gel electrophoresis. Identical band patterns within both substances could be detected, one around 45 kDa molecular weight and a cluster around 30-35 kDa molecular weight. The occurrence of identical protein patterns within the mucus and in the newly formed aragonite confirms the idea that the mucus plays an important role during the organomineralization of the coral epitheca.", + "lang": "en", + "mimetype": "text/plain", + "sha1": "eab45cb50279523aa15e47d4ff6b61453110d80b" + } + ], + "contribs": [ + { + "given_name": "Joachim", + "index": 0, + "raw_name": "Joachim Reitner", + "role": "author", + "surname": "Reitner" + }, + { + "raw_name": "FID GEO" + }, + { + "raw_name": "FID GEO" + } + ], + "ext_ids": { + "doi": "10.23689/fidgeo-2708" + }, + "extra": { + "datacite": { + "resourceType": "Article", + "resourceTypeGeneral": "Text" + }, + "release_month": 5 + }, + "ident": "5lk635o65nc2tnkus3pkf2ggeq", + "language": "en", + "publisher": "FID GEO", + "refs": [], + "release_date": "2018-05-07", + "release_stage": "published", + "release_type": "article-journal", + "release_year": 2018, + "revision": "1f08bce1-d393-4a94-8ffa-0412f9b86a26", + "state": "active", + "title": "Calcifying extracellular mucus substances (EMS) of Madrepora oculata", + "work_id": "mswo636sbbgytakvcw36uz5htq" +} diff --git a/tests/data/release/75ky5xniobchzbhzwhmwhu5uoa b/tests/data/release/75ky5xniobchzbhzwhmwhu5uoa new file mode 100644 index 0000000..965a29a --- /dev/null +++ b/tests/data/release/75ky5xniobchzbhzwhmwhu5uoa @@ -0,0 +1,252 @@ +{ + "abstracts": [ + { + "content": "<p><strong>Abstract.</strong> The soil texture representation with the standard textural fraction triplet <q>sand–silt–clay</q> is commonly used to estimate soil properties. The objective of this work was to test the hypothesis that other fraction sizes in the triplets may provide a better representation of soil texture for estimating some soil parameters. We estimated the cumulative particle size distribution and bulk density from an entropy-based representation of the textural triplet with experimental data for 6240 soil samples. The results supported the hypothesis. For example, simulated distributions were not significantly different from the original ones in 25 and 85<span class=\"thinspace\"></span>% of cases when the sand–silt–clay and <q>very coarse+coarse + medium sand − fine + very fine sand − silt+clay</q> were used, respectively. When the same standard and modified triplets were used to estimate the average bulk density, the coefficients of determination were 0.001 and 0.967, respectively. Overall, the textural triplet selection appears to be application and data specific.</p>\n ", + "mimetype": "application/xml+jats", + "sha1": "7b160d44a40de5304ed25cb0dec26bf6d86b13c3" + } + ], + "container_id": "2ffmqowoafbkzae4g2zdu7qx6m", + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "Miguel Ángel Martín", + "role": "author" + }, + { + "creator_id": "hlpiwppdfnbejhct5zmjbigoca", + "index": 1, + "raw_name": "Yakov A. Pachepsky", + "role": "author" + }, + { + "creator_id": "p5nczejcmzfznpxliunuceswey", + "index": 2, + "raw_name": "Carlos García-Gutiérrez", + "role": "author" + }, + { + "index": 3, + "raw_name": "Miguel Reyes", + "role": "author" + } + ], + "ext_ids": { + "doi": "10.5194/se-9-159-2018" + }, + "extra": { + "crossref": { + "license": [ + { + "URL": "https://creativecommons.org/licenses/by/4.0/", + "content-version": "unspecified", + "delay-in-days": 0, + "start": "2018-02-22T00:00:00Z" + } + ], + "subject": [ + "Earth-Surface Processes", + "Stratigraphy", + "Palaeontology", + "Soil Science", + "Geology", + "Geochemistry and Petrology", + "Geophysics" + ], + "type": "journal-article" + } + }, + "ident": "75ky5xniobchzbhzwhmwhu5uoa", + "language": "en", + "pages": "159-165", + "publisher": "Copernicus GmbH", + "refs": [ + { + "extra": { + "doi": "10.1016/s0927-7757(97)00144-1", + "unstructured": "Assouline, S. and Rouault, Y.: Modeling the relationships between particle and pore size distributions in multicomponent sphere packs: Application to the water retention curve, Colloid. Surface. A, 127, 201–210, https://doi.org/10.1016/S0927-7757(97)00144-1, 1997." + }, + "index": 0, + "key": "ref1" + }, + { + "extra": { + "doi": "10.1098/rspa.1985.0057", + "unstructured": "Barnsley, M. F. and Demko, S.: Iterated functions systems and the global construction of fractals, Proc. R. Soc. Lon. Ser.-A, 399, 243–275, https://doi.org/10.1098/rspa.1985.0057, 1985." + }, + "index": 1, + "key": "ref2" + }, + { + "extra": { + "unstructured": "Carlisle, V. W., Caldwell, R. E., Sodek III, F., Hammond, L. C., Calhoun, F. G., Granger, M. A., and Breland, H. L.: Characterization Data for Selected Florida Soils, Univ. of Florida, Gainesville, Fla, USA, 1978." + }, + "index": 2, + "key": "ref3" + }, + { + "extra": { + "unstructured": "Carlisle, V. W., Hallmark, C. T., Sodek III, F., Caldwell, R. E., Hammond, L. C., and Berkeiser, V. E.: Characterization Data For Selected Florida Soils, Soil Conservation Service, University of Florida, Institute of Food and Agricultural Sciences, Soil Sciences Department, Soil Characterization Laboratory, Riverside, CA, USA, 1981." + }, + "index": 3, + "key": "ref4" + }, + { + "extra": { + "unstructured": "Elton, J.: An ergodic theorem for iterated maps, Ergod.Theory Dyn. Syst., 7, 481–488, 1987." + }, + "index": 4, + "key": "ref5" + }, + { + "extra": { + "unstructured": "Khinchin, A. I.: Mathematical Foundation of Information Theory, Dover Publications, New York, USA, 1957." + }, + "index": 5, + "key": "ref6" + }, + { + "extra": { + "unstructured": "Kravchenko, A. and Zhang, R.: Estimating the soil water retention from particle-size distributions: a fractal approach, Soil Sci., 163, 171–179, 1998." + }, + "index": 6, + "key": "ref7" + }, + { + "extra": { + "doi": "10.1098/rspa.1998.0216", + "unstructured": "Martín, M. A. and Taguas, F. J.: Fractal modeling, characterization and simulation of particle-size distributions in soil, Proc. R. Soc. Lon. Ser. A, 454, 1457–1468, https://doi.org/10.1098/rspa.1998.0216, 1998." + }, + "index": 7, + "key": "ref8" + }, + { + "extra": { + "doi": "10.1016/j.geoderma.2016.09.008", + "unstructured": "Martín, M. A., Reyes, M., and Taguas, F. J.: Estimating soil bulk density with information metrics of soil texture, Geoderma, 287, 66–70, https://doi.org/10.1016/j.geoderma.2016.09.008, 2017a." + }, + "index": 8, + "key": "ref9" + }, + { + "extra": { + "doi": "10.1007/s10035-016-0692-3", + "unstructured": "Martín, M. A., Reyes, M., and Taguas, F. J.: An entropy-like parameter of particle size distributions as packing density index in complex granular media, Granul. Matter, 19, 9, https://doi.org/10.1007/s10035-016-0692-3, 2017b." + }, + "index": 9, + "key": "ref10" + }, + { + "extra": { + "doi": "10.1016/j.geoderma.2005.04.018", + "unstructured": "Nemes, A. and Rawls, W. 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The objective of this work was to test the hypothesis that other fraction sizes in the triplets may provide better representation of soil texture for estimating some soil parameters. We estimated the cumulative particle size distribution and bulk density from entropy-based representation of the textural triplet with experimental data for 6300 soil samples. Results supported the hypothesis. For example, simulated distributions were not significantly different from the original ones in 25 and 85&amp;thinsp;% of cases when the 'sand-silt-sand' and 'very coarse+coarse + medium sand &amp;ndash; fine +very fine sand &amp;ndash; silt+clay', were used, respectively. When the same standard and modified triplets were used to estimate the average bulk density, the coefficients of determination were 0.001 and 0.967, respectively. Overall, the textural triplet selection appears to be application- and data-specific.\n ", + "mimetype": "application/xml+jats", + "sha1": "6b4067965dd1a9939dda89d4d25bd34abcf38a4e" + } + ], + "container_id": "ime74rybwnaulfplfzm2dxecte", + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "Miguel Ángel Martín", + "role": "author" + }, + { + "index": 1, + "raw_name": "Yakov A. Pachepsky", + "role": "author" + }, + { + "creator_id": "p5nczejcmzfznpxliunuceswey", + "index": 2, + "raw_name": "Carlos García-Gutiérrez", + "role": "author" + }, + { + "index": 3, + "raw_name": "Miguel Reyes", + "role": "author" + } + ], + "ext_ids": { + "doi": "10.5194/se-2017-84" + }, + "extra": { + "crossref": { + "license": [ + { + "URL": "https://creativecommons.org/licenses/by/4.0/", + "content-version": "unspecified", + "delay-in-days": 0, + "start": "2017-10-10T00:00:00Z" + } + ], + "type": "journal-article" + } + }, + "ident": "uvgwfvwnnbg7xchy63bloyrwvi", + "language": "en", + "pages": "1-14", + "publisher": "Copernicus GmbH", + "refs": [], + "release_date": "2017-10-10", + "release_stage": "published", + "release_type": "article-journal", + "release_year": 2017, + "revision": "ef9cd393-529b-4efa-9669-3ff068e8cd96", + "state": "active", + "title": "On soil textural classifications and soil texture-based estimations", + "work_id": "h3cos53tsneexl6c4eelhzaddu" +} diff --git a/tests/data/release/zfwf3tefajc6zdxa47vgilm7wm b/tests/data/release/zfwf3tefajc6zdxa47vgilm7wm new file mode 100644 index 0000000..51d71ba --- /dev/null +++ b/tests/data/release/zfwf3tefajc6zdxa47vgilm7wm @@ -0,0 +1,33 @@ +{ + "abstracts": [], + "contribs": [ + { + "extra": { + "seq": "first" + }, + "index": 0, + "raw_name": "Joachim Reitner", + "role": "author" + } + ], + "ext_ids": { + "core": "33670711", + "doi": "10.1007/3-540-27673-4_38" + }, + "extra": { + "container_name": "Erlangen Earth Conference Series", + "crossref": { + "type": "book-chapter" + } + }, + "ident": "zfwf3tefajc6zdxa47vgilm7wm", + "pages": "731-744", + "publisher": "Springer-Verlag", + "refs": [], + "release_stage": "published", + "release_type": "chapter", + "revision": "03ccf3b6-7e8b-4fac-891e-2003551f5e77", + "state": "active", + "title": "Calcifying extracellular mucus substances (EMS) of Madrepora oculata — a first geobiological approach", + "work_id": "3rgdqpbcjrgt5mud3bnomnawva" +} diff --git a/tests/data/verify.csv b/tests/data/verify.csv index b13a696..46df18e 100644 --- a/tests/data/verify.csv +++ b/tests/data/verify.csv @@ -77,3 +77,9 @@ vz7q453kr5ds3ptsldwxedbiii,2wzybzqlmjhjfh75cxjohbvzi4,Status.DIFFERENT,Miss.RELE efumvvpw6jbb7ehp2qfdatgxzy,funn7cwjbrgefji27tzpl4avuu,Status.STRONG,OK.ARXIV_VERSION pjvosq3ulzeb5d6w7zijrbz75y,pxkm2asxjnflzkdi5qnfd5fpt4,Status.DIFFERENT,Miss.BOOK_CHAPTER ji3qg5sajndt7p54u7wumqsjye,hxau2e34bnhhbeucfdrncgmcby,Status.DIFFERENT,Miss.RELEASE_TYPE +2gpvznjjcfbmhats6ot2vsodju,qk6arua2snaobfvdvlfvjp3yeq,Status.DIFFERENT, +75ky5xniobchzbhzwhmwhu5uoa,uvgwfvwnnbg7xchy63bloyrwvi,Status.STRONG, +jdtngtiz3bdqboypujoni2x3ry,byh7xr5qhjca3bw53ivdotck3e,Status.EXACT, +5lk635o65nc2tnkus3pkf2ggeq,hqrvhbvocvaabg6nr5p43tl3uq,TODO, +5lk635o65nc2tnkus3pkf2ggeq,zfwf3tefajc6zdxa47vgilm7wm,TODO, +hqrvhbvocvaabg6nr5p43tl3uq,zfwf3tefajc6zdxa47vgilm7wm,TODO, diff --git a/tests/test_cluster.py b/tests/test_cluster.py index e5944af..ef63882 100644 --- a/tests/test_cluster.py +++ b/tests/test_cluster.py @@ -1,13 +1,14 @@ -import json -import io import collections +import io +import json import os import tempfile import pytest -from fuzzycat.cluster import (release_key_title, release_key_title_normalized, - release_key_title_nysiis, Cluster) +from fuzzycat.cluster import (Cluster, release_key_title, + release_key_title_normalized, + release_key_title_nysiis) Case = collections.namedtuple("Case", 'input output') diff --git a/tests/test_utils.py b/tests/test_utils.py index 46ffd0e..ea188a4 100644 --- a/tests/test_utils.py +++ b/tests/test_utils.py @@ -1,5 +1,6 @@ import pytest -from fuzzycat.utils import slugify_string, cut, author_similarity_score + +from fuzzycat.utils import author_similarity_score, cut, slugify_string def test_slugify_string(): diff --git a/tests/test_verify.py b/tests/test_verify.py index 4807de8..52ad65a 100644 --- a/tests/test_verify.py +++ b/tests/test_verify.py @@ -2,6 +2,7 @@ import pytest import csv import json import os +import logging from fuzzycat.verify import Status, compare @@ -16,6 +17,9 @@ status_mapping = { "Status.WEAK": Status.WEAK, } +logger = logging.getLogger('test_verify') +logger.setLevel(logging.DEBUG) + def load_release_ident(ident): dst = os.path.join(RELEASE_ENTITIES_DIR, ident) @@ -29,9 +33,15 @@ def test_compare(): with open(VERIFY_CSV) as f: reader = csv.reader(f, delimiter=',') for i, row in enumerate(reader): - a, b, expected_status, expected_reason = row + try: + a, b, expected_status, expected_reason = row + except ValueError as exc: + pytest.fail("invalid test file, maybe missing a comma? {}".format(exc)) status, reason = compare(load_release_ident(a), load_release_ident(b)) + if not expected_status or expected_status.lower() == "todo": + logger.debug("skipping test {} {}: no result defined (we think {}, {})".format(a, b, status, reason)) assert status == status, "status: want {}, got {} for {} {}".format( expected_status, status, a, b) if expected_reason: assert reason == reason, "reason: want {}, got {}".format(expected_reason, reason) + logger.info("ran verification over {} cases (https://git.io/JkDgS)".format(i)) -- cgit v1.2.3