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import json, gzip
import pytest
from fatcat_tools.importers import JalcImporter, Bs4XmlFilePusher, Bs4XmlLinesPusher
from fixtures import api
from bs4 import BeautifulSoup
@pytest.fixture(scope="function")
def jalc_importer(api):
with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file:
yield JalcImporter(api, issn_file, extid_map_file='tests/files/example_map.sqlite3', bezerk_mode=True)
@pytest.fixture(scope="function")
def jalc_importer_existing(api):
with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file:
yield JalcImporter(api, issn_file, extid_map_file='tests/files/example_map.sqlite3', bezerk_mode=False)
def test_jalc_importer(jalc_importer):
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/jalc_lod_sample.xml', 'r') as f:
jalc_importer.bezerk_mode = True
counts = Bs4XmlFilePusher(jalc_importer, f, "Description").run()
assert counts['insert'] == 2
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = jalc_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "jalc" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.JalcImporter" in eg.extra['agent']
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/jalc_lod_sample.xml', 'r') as f:
jalc_importer.bezerk_mode = False
jalc_importer.reset()
counts = Bs4XmlFilePusher(jalc_importer, f, "Description").run()
assert counts['insert'] == 0
assert counts['exists'] == 2
assert counts['skip'] == 0
assert last_index == jalc_importer.api.get_changelog(limit=1)[0].index
def test_jalc_importer_lines(jalc_importer):
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/jalc_rdf_sample_100.xml', 'r') as f:
jalc_importer.bezerk_mode = True
counts = Bs4XmlLinesPusher(jalc_importer, f, "<rdf:Description").run()
assert counts['insert'] == 93
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = jalc_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "jalc" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.JalcImporter" in eg.extra['agent']
last_index = jalc_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/jalc_rdf_sample_100.xml', 'r') as f:
jalc_importer.bezerk_mode = False
jalc_importer.reset()
counts = Bs4XmlLinesPusher(jalc_importer, f, "<rdf:Description").run()
assert counts['insert'] == 0
assert counts['exists'] == 93
assert counts['skip'] == 0
assert last_index == jalc_importer.api.get_changelog(limit=1)[0].index
def test_jalc_xml_parse(jalc_importer):
with open('tests/files/jalc_lod_sample.xml', 'r') as f:
soup = BeautifulSoup(f, "xml")
r = jalc_importer.parse_record(soup.find_all("Description")[0])
print(r.extra)
assert r.title == "New carbides in the Ni-Ti-Mo-C system"
assert r.subtitle == None
assert r.original_title == "Ni-Ti-Mo-C系に出現する新炭化物相について"
assert r.publisher == "Japan Society of Powder and Powder Metallurgy"
assert r.release_type == "article-journal"
assert r.release_stage == "published"
assert r.license_slug == None
assert r.ext_ids.doi == "10.2497/jjspm.36.898"
assert r.language == "ja"
assert r.volume == "36"
assert r.issue == "8"
assert r.pages == "898-902"
assert r.release_year == 1989
# matched by ISSN, so shouldn't be in there?
#assert extra['container_name'] == "International Journal of Quantum Chemistry"
assert len(r.contribs) == 4
assert r.contribs[0].raw_name == "Hashimoto Yasuhiko"
assert r.contribs[0].given_name == "Yasuhiko"
assert r.contribs[0].surname == "Hashimoto"
assert r.contribs[0].extra['original_name']['raw_name'] == "橋本 雍彦"
assert r.contribs[0].extra['original_name']['given_name'] == "雍彦"
assert r.contribs[0].extra['original_name']['surname'] == "橋本"
assert r.contribs[3].raw_name == "Takahashi Teruo"
assert r.contribs[3].given_name == "Teruo"
assert r.contribs[3].surname == "Takahashi"
assert r.contribs[3].extra['original_name']['raw_name'] == "高橋 輝男"
assert r.contribs[3].extra['original_name']['given_name'] == "輝男"
assert r.contribs[3].extra['original_name']['surname'] == "高橋"
assert not r.refs
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