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import json
import pytest
from fatcat_tools.importers import IngestFileResultImporter, IngestWebResultImporter, JsonLinePusher
from fixtures import *
@pytest.fixture(scope="function")
def ingest_importer(api):
yield IngestFileResultImporter(api)
@pytest.fixture(scope="function")
def ingest_web_importer(api):
yield IngestWebResultImporter(api)
# TODO: use API to check that entities actually created...
def test_ingest_importer_basic(ingest_importer):
with open('tests/files/example_ingest.json', 'r') as f:
JsonLinePusher(ingest_importer, f).run()
def test_ingest_importer(ingest_importer):
last_index = ingest_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/example_ingest.json', 'r') as f:
ingest_importer.bezerk_mode = True
counts = JsonLinePusher(ingest_importer, f).run()
assert counts['insert'] == 1
assert counts['exists'] == 0
assert counts['skip'] == 1
# fetch most recent editgroup
change = ingest_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "crawled from web" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.IngestFileResultImporter" in eg.extra['agent']
# re-insert; should skip
with open('tests/files/example_ingest.json', 'r') as f:
ingest_importer.reset()
ingest_importer.bezerk_mode = False
counts = JsonLinePusher(ingest_importer, f).run()
assert counts['insert'] == 0
assert counts['exists'] == 1
assert counts['skip'] == 1
def test_ingest_importer_xml(ingest_importer):
last_index = ingest_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/example_ingest_xml.json', 'r') as f:
ingest_importer.bezerk_mode = True
counts = JsonLinePusher(ingest_importer, f).run()
print(counts)
assert counts['insert'] == 1
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = ingest_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "crawled from web" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.IngestFileResultImporter" in eg.extra['agent']
# re-import should skip
with open('tests/files/example_ingest_xml.json', 'r') as f:
ingest_importer.reset()
ingest_importer.bezerk_mode = False
counts = JsonLinePusher(ingest_importer, f).run()
assert counts['insert'] == 0
assert counts['exists'] == 1
assert counts['skip'] == 0
def test_ingest_importer_web(ingest_web_importer):
last_index = ingest_web_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/example_ingest_html.json', 'r') as f:
ingest_web_importer.bezerk_mode = True
counts = JsonLinePusher(ingest_web_importer, f).run()
print(counts)
assert counts['insert'] == 1
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = ingest_web_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "crawled from web" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.IngestWebResultImporter" in eg.extra['agent']
# re-import should skip
with open('tests/files/example_ingest_html.json', 'r') as f:
ingest_web_importer.reset()
ingest_web_importer.bezerk_mode = False
counts = JsonLinePusher(ingest_web_importer, f).run()
assert counts['insert'] == 0
assert counts['exists'] == 1
assert counts['skip'] == 0
def test_ingest_importer_stage(ingest_importer, api):
"""
Tests that ingest importer correctly handles release stage matching
"""
test_table = [
dict(request_stage=None, release_stage=None, status="insert"),
dict(request_stage="published", release_stage=None, status="insert"),
dict(request_stage=None, release_stage="draft", status="insert"),
dict(request_stage="published", release_stage="published", status="insert"),
dict(request_stage="draft", release_stage="published", status="skip-release-stage"),
dict(request_stage="published", release_stage="draft", status="skip-release-stage"),
]
ingest_importer.bezerk_mode = True
with open('tests/files/example_ingest.json', 'r') as f:
raw = json.loads(f.readline())
for row in test_table:
#print(row)
# set dummy record stage
eg = quick_eg(api)
r1 = api.lookup_release(doi="10.123/abc")
r1.release_stage = row['release_stage']
api.update_release(eg.editgroup_id, r1.ident, r1)
api.accept_editgroup(eg.editgroup_id)
# set ingest request stage
raw['request']['release_stage'] = row['request_stage']
ingest_importer.reset()
ingest_importer.push_record(raw)
counts = ingest_importer.finish()
print(counts)
assert counts["total"] == 1
assert counts[row['status']] == 1
def test_ingest_dict_parse(ingest_importer):
with open('tests/files/example_ingest.json', 'r') as f:
raw = json.loads(f.readline())
f = ingest_importer.parse_record(raw)
assert f.sha1 == "00242a192acc258bdfdb151943419437f440c313"
assert f.md5 == "f4de91152c7ab9fdc2a128f962faebff"
assert f.mimetype == "application/pdf"
assert f.size == 255629
assert len(f.urls) == 2
for u in f.urls:
if u.rel == "web":
assert u.url.startswith("http://journals.plos.org")
if u.rel == "webarchive":
assert u.url.startswith("https://web.archive.org/")
assert len(f.release_ids) == 1
def test_ingest_dict_parse_old(ingest_importer):
with open('tests/files/example_ingest.old.json', 'r') as f:
raw = json.loads(f.readline())
# ancient ingest requests had no type; skip them
f = ingest_importer.parse_record(raw)
assert f == None
raw['request']['ingest_type'] = 'pdf'
f = ingest_importer.parse_record(raw)
assert f.sha1 == "00242a192acc258bdfdb151943419437f440c313"
assert f.md5 == "f4de91152c7ab9fdc2a128f962faebff"
assert f.mimetype == "application/pdf"
assert f.size == 255629
assert len(f.urls) == 2
for u in f.urls:
if u.rel == "web":
assert u.url.startswith("http://journals.plos.org")
if u.rel == "webarchive":
assert u.url.startswith("https://web.archive.org/")
assert len(f.release_ids) == 1
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