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import os
import json
import base64
import pytest
from fatcat_tools.importers import GrobidMetadataImporter, LinePusher
from fixtures import api
"""
WARNING: these tests are currently very fragile because they have database
side-effects. Should probably be disabled or re-written.
"""
@pytest.fixture(scope="function")
def grobid_metadata_importer(api):
yield GrobidMetadataImporter(api)
def test_grobid_metadata_parse(grobid_metadata_importer):
with open('tests/files/example_grobid_metadata_lines.tsv', 'r') as f:
raw = json.loads(f.readline().split('\t')[4])
re = grobid_metadata_importer.parse_grobid_json(raw)
assert re
assert re.title == "PEMBELAJARAN FISIKA DENGAN PENDEKATAN KETERAMPILAN PROSES MELALUI METODE DEMONSTRASI MENGGUNAKAN MEDIA RIIL DAN MEDIA VIRTUIL DITINJAU DARI MOTIVASI DAN GAYA BERFIKIR SISWA"
assert len(re.contribs) == 5
print(re.contribs)
assert re.contribs[0].raw_name == "Wahyu Ary"
assert re.publisher == None
if re.extra:
assert re.extra.get('container_name') == None
assert len(re.refs) == 27
def test_file_metadata_parse(grobid_metadata_importer):
with open('tests/files/example_grobid_metadata_lines.tsv', 'r') as f:
f.readline()
raw = f.readline().split('\t')
# randomize sha1 so tests are repeatable
random_sha1 = "sha1:{}".format(base64.b32encode(os.urandom(20)).decode('utf-8').upper())
fe = grobid_metadata_importer.parse_file_metadata(
random_sha1, json.loads(raw[1]), raw[2], int(raw[3]))
assert fe
#assert fe.sha1 == "d4a841744719518bf8bdd5d91576ccedc55efbb5" # "sha1:2SUEC5CHDFIYX6F52XMRK5WM5XCV565V"
assert fe.md5 == None
assert fe.mimetype == "application/pdf"
assert fe.size == 142710
assert fe.urls[1].url.startswith("http://via.library.depaul.edu")
assert fe.urls[1].rel == "web"
assert fe.urls[0].url.startswith("https://web.archive.org/")
assert fe.urls[0].rel == "webarchive"
assert len(fe.release_ids) == 0
def test_grobid_metadata_importer(grobid_metadata_importer):
last_index = grobid_metadata_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/example_grobid_metadata_lines.tsv', 'r') as f:
grobid_metadata_importer.bezerk_mode = True
counts = LinePusher(grobid_metadata_importer, f).run()
assert counts['insert'] == 10
assert counts['inserted.release'] == 10
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = grobid_metadata_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "grobid" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.GrobidMetadataImporter" in eg.extra['agent']
with open('tests/files/example_grobid_metadata_lines.tsv', 'r') as f:
grobid_metadata_importer.reset()
grobid_metadata_importer.bezerk_mode = False
counts = LinePusher(grobid_metadata_importer, f).run()
assert counts['insert'] == 0
assert counts['inserted.release'] == 0
assert counts['exists'] == 10
assert counts['skip'] == 0
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