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import json
import datetime
import pytest
import elasticsearch
import fatcat_openapi_client
from fatcat_tools.importers import DoajArticleImporter, JsonLinePusher
from fatcat_tools.transforms import entity_to_dict
from fixtures import *
@pytest.fixture(scope="function")
def doaj_importer(api, mocker):
es_client = elasticsearch.Elasticsearch("mockbackend")
mocker.patch('elasticsearch.connection.Urllib3HttpConnection.perform_request')
with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file:
yield DoajArticleImporter(
api,
issn_file,
bezerk_mode=True,
es_client=es_client,
)
def test_doaj_importer(doaj_importer):
last_index = doaj_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/example_doaj_articles.json", "r") as f:
doaj_importer.bezerk_mode = True
doaj_importer.do_fuzzy_match = False
counts = JsonLinePusher(doaj_importer, f).run()
assert counts["insert"] == 5
assert counts["exists"] == 0
assert counts["skip"] == 0
success_changelog = doaj_importer.api.get_changelog(limit=1)[0]
assert last_index + 1 == success_changelog.index
# fetch most recent editgroup
change = doaj_importer.api.get_changelog_entry(index=last_index + 1)
eg = change.editgroup
assert eg.description
assert "doaj" in eg.description.lower()
assert eg.extra["git_rev"]
assert "fatcat_tools.DoajArticleImporter" in eg.extra["agent"]
last_index = doaj_importer.api.get_changelog(limit=1)[0].index
with open("tests/files/example_doaj_articles.json", "r") as f:
doaj_importer.bezerk_mode = False
doaj_importer.reset()
counts = JsonLinePusher(doaj_importer, f).run()
assert counts["insert"] == 0
assert counts["exists"] == 5
assert counts["skip"] == 0
assert last_index == doaj_importer.api.get_changelog(limit=1)[0].index
# cleanup file entities (so other import tests work)
success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id)
eg = quick_eg(doaj_importer.api)
for release_edit in success_editgroup.edits.releases:
doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident)
doaj_importer.api.accept_editgroup(eg.editgroup_id)
def test_doaj_importer_existing_doi(doaj_importer):
"""
One of the DOAJ test entities has a dummy DOI (10.123/abc); this test
ensures that it isn't clobbered, an then that it gets updated.
"""
with open("tests/files/example_doaj_articles.json", "r") as f:
doaj_importer.reset()
doaj_importer.bezerk_mode = False
doaj_importer.do_updates = False
doaj_importer.do_fuzzy_match = False
counts = JsonLinePusher(doaj_importer, f).run()
print(counts)
assert counts["insert"] == 4
assert counts["exists"] == 1
assert counts["skip"] == 0
success_changelog = doaj_importer.api.get_changelog(limit=1)[0]
success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id)
with open("tests/files/example_doaj_articles.json", "r") as f:
doaj_importer.reset()
doaj_importer.bezerk_mode = False
doaj_importer.do_updates = True
doaj_importer.do_fuzzy_match = False
counts = JsonLinePusher(doaj_importer, f).run()
print(counts)
assert counts["insert"] == 0
assert counts["exists"] == 4
assert counts["update"] == 1
update_changelog = doaj_importer.api.get_changelog(limit=1)[0]
update_editgroup = doaj_importer.api.get_editgroup(update_changelog.editgroup_id)
with open("tests/files/example_doaj_articles.json", "r") as f:
doaj_importer.reset()
doaj_importer.bezerk_mode = False
doaj_importer.do_updates = True
doaj_importer.do_fuzzy_match = False
counts = JsonLinePusher(doaj_importer, f).run()
print(counts)
assert counts["insert"] == 0
assert counts["exists"] == 5
assert counts["update"] == 0
# cleanup file entities (so other import tests work)
eg = quick_eg(doaj_importer.api)
for release_edit in success_editgroup.edits.releases:
doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident)
for release_edit in update_editgroup.edits.releases:
print(release_edit)
doaj_importer.api.update_release(
eg.editgroup_id,
release_edit.ident,
ReleaseEntity(
revision=release_edit.prev_revision,
ext_ids=ReleaseExtIds(),
),
)
doaj_importer.api.accept_editgroup(eg.editgroup_id)
def test_doaj_dict_parse(doaj_importer):
with open("tests/files/example_doaj_articles.json", "r") as f:
raw = json.loads(f.readline())
r = doaj_importer.parse_record(raw)
assert r.title == "Effect of hydrogen on tensile properties and fracture behavior of PH 13-8 Mo steel"
assert r.publisher == "Elsevier"
assert r.release_type == "article-journal"
assert r.release_stage == "published"
assert r.license_slug == "cc-by-nc-nd"
assert r.original_title == None
assert r.ext_ids.doi == "10.1016/j.matdes.2016.06.110"
assert r.ext_ids.doaj == "e58f08a11ecb495ead55a44ad4f89808"
assert r.subtitle == None
assert r.release_date == None
assert r.release_year == 2016
assert r.volume == "108"
assert r.number == None
assert r.pages == "608-617"
assert r.version == None
assert r.language == "en"
# matched by ISSN, so wouldn't be defined normally
assert r.extra['container_name'] == "Materials & Design"
assert len(r.abstracts) == 1
assert len(r.abstracts[0].content) == 1033
assert len(r.contribs) == 5
assert r.contribs[0].raw_name == "Xinfeng Li"
assert r.contribs[0].given_name == None
assert r.contribs[0].surname == None
assert not r.refs
#print(r.extra)
assert r.extra['release_month'] == 10
assert r.extra['country'] == 'gb'
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