aboutsummaryrefslogtreecommitdiffstats
path: root/python/tests/import_crossref.py
blob: 451235408a60740ce282b46f2ff6a41f410679e7 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102

import json
import pytest
from fatcat_tools.importers import CrossrefImporter, JsonLinePusher
from fixtures import api


@pytest.fixture(scope="function")
def crossref_importer(api):
    with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file:
        yield CrossrefImporter(api, issn_file, extid_map_file='tests/files/example_map.sqlite3', bezerk_mode=True)

@pytest.fixture(scope="function")
def crossref_importer_existing(api):
    with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file:
        yield CrossrefImporter(api, issn_file, extid_map_file='tests/files/example_map.sqlite3', bezerk_mode=False)

def test_crossref_importer_batch(crossref_importer):
    with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f:
        JsonLinePusher(crossref_importer, f).run()

def test_crossref_importer(crossref_importer):
    last_index = crossref_importer.api.get_changelog(limit=1)[0].index
    with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f:
        crossref_importer.bezerk_mode = True
        counts = JsonLinePusher(crossref_importer, f).run()
    assert counts['insert'] == 14
    assert counts['exists'] == 0
    assert counts['skip'] == 0

    # fetch most recent editgroup
    change = crossref_importer.api.get_changelog_entry(index=last_index+1)
    eg = change.editgroup
    assert eg.description
    assert "crossref" in eg.description.lower()
    assert eg.extra['git_rev']
    assert "fatcat_tools.CrossrefImporter" in eg.extra['agent']

    with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f:
        crossref_importer.bezerk_mode = False
        crossref_importer.reset()
        counts = JsonLinePusher(crossref_importer, f).run()
    assert counts['insert'] == 0
    assert counts['exists'] == 14
    assert counts['skip'] == 0

def test_crossref_mappings(crossref_importer):
    assert crossref_importer.map_release_type('journal-article') == "article-journal"
    assert crossref_importer.map_release_type('asdf') is None
    assert crossref_importer.map_release_type('component') is None
    assert crossref_importer.map_release_type('standard') == 'standard'

def test_crossref_importer_create(crossref_importer):
    crossref_importer.create_containers = True
    with open('tests/files/crossref-works.2018-01-21.badsample.json', 'r') as f:
        JsonLinePusher(crossref_importer, f).run()

def test_crossref_dict_parse(crossref_importer):
    with open('tests/files/crossref-works.single.json', 'r') as f:
        # not a single line
        raw = json.loads(f.read())
        r = crossref_importer.parse_record(raw)
        extra = r.extra['crossref']
        assert r.title == "Renormalized perturbation theory by the moment method for degenerate states: Anharmonic oscillators"
        assert r.doi == "10.1002/(sici)1097-461x(1998)66:4<261::aid-qua1>3.0.co;2-t"
        assert r.publisher == "Wiley-Blackwell"
        print(extra)
        assert extra['container-title'] == ["International Journal of Quantum Chemistry"]
        assert r.release_type == "article-journal"
        assert r.release_status == "published"
        assert r.isbn13 == "978-3-16-148410-0"
        assert 'subtitle' not in extra
        assert 'archive' not in extra
        assert 'funder' not in extra
        assert len(r.contribs) == 5
        assert r.contribs[0].raw_name == "Marcelo D. Radicioni"
        assert r.contribs[0].index == 0
        assert r.contribs[1].raw_affiliation == "Some University"
        assert r.contribs[1].extra['affiliations'] == ["Some Department"]
        assert r.contribs[1].role == "author"
        assert r.contribs[3].role == "editor"
        assert r.contribs[3].index is None
        assert r.contribs[4].role == "translator"
        assert r.contribs[4].index is None
        assert len(r.refs) == 25
        assert r.refs[0].key == "BIB1"
        assert r.refs[0].year == 1972
        assert r.refs[0].locator == "1734"
        assert r.refs[0].container_name == "J. Chem. Phys."
        assert r.refs[0].extra['crossref'] == {"volume": "57", "author": "Swenson", "doi": "10.1063/1.1678462"}
        assert r.refs[3].container_name == "Large Order Perturbation Theory and Summation Methods in Quantum Mechanics, Lecture Notes in Chemistry"

def test_stateful_checking(crossref_importer_existing):
    with open('tests/files/crossref-works.single.json', 'r') as f:
        # not a single line, a whole document
        raw = f.read()
        # might not exist yet...
        crossref_importer_existing.push_record(json.loads(raw))
        crossref_importer_existing.finish()
        # make sure we wouldn't insert again
        entity = crossref_importer_existing.parse_record(json.loads(raw))
        assert crossref_importer_existing.try_update(entity) is False