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import json, gzip
import pytest
from fatcat_tools.importers import ArxivRawImporter, Bs4XmlFilePusher
from fixtures import api
from bs4 import BeautifulSoup
@pytest.fixture(scope="function")
def arxiv_importer(api):
ari = ArxivRawImporter(api, bezerk_mode=True)
ari._test_override = True
return ari
def test_arxiv_importer(arxiv_importer):
last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
arxiv_importer.bezerk_mode = True
counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
assert counts['insert'] == 2
assert counts['exists'] == 0
assert counts['skip'] == 0
# fetch most recent editgroup
change = arxiv_importer.api.get_changelog_entry(index=last_index+1)
eg = change.editgroup
assert eg.description
assert "arxiv" in eg.description.lower()
assert eg.extra['git_rev']
assert "fatcat_tools.ArxivRawImporter" in eg.extra['agent']
last_index = arxiv_importer.api.get_changelog(limit=1)[0].index
with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
arxiv_importer.bezerk_mode = False
arxiv_importer.reset()
counts = Bs4XmlFilePusher(arxiv_importer, f, "record").run()
assert counts['insert'] == 0
assert counts['exists'] == 2
assert counts['skip'] == 0
assert last_index == arxiv_importer.api.get_changelog(limit=1)[0].index
def test_arxiv_xml_parse(arxiv_importer):
with open('tests/files/arxivraw_1810.09584.xml', 'r') as f:
soup = BeautifulSoup(f, "xml")
r = arxiv_importer.parse_record(soup.find_all("record")[0])
r1 = r[0]
r2 = r[1]
print(r1.extra)
print(r2.extra)
assert r1.work_id == r2.work_id
assert r1.title == "Martingale theory for housekeeping heat"
assert r1.subtitle == None
assert r1.original_title == None
assert r1.release_type == "article"
assert r1.release_stage == "submitted"
assert r2.release_stage == "published"
assert r1.license_slug == "ARXIV-NED-1.0"
assert r1.version == "v1"
assert r2.version == "v2"
assert r1.ext_ids.arxiv == "1810.09584v1"
assert r2.ext_ids.arxiv == "1810.09584v2"
assert r1.ext_ids.doi == None
assert r2.ext_ids.doi == "10.1209/0295-5075/124/60006"
assert r1.release_year == 2018
assert str(r1.release_date) == "2018-10-22"
assert r2.release_year == 2019
assert str(r2.release_date) == "2019-01-13"
# matched by ISSN, so shouldn't be in there?
#assert extra['container_name'] == "Abstracts of the Papers Communicated to the Royal Society of London"
assert len(r1.contribs) == 4
assert r1.extra['arxiv']['categories'] == ['cond-mat.stat-mech', 'physics.bio-ph', 'physics.data-an']
assert r1.extra['arxiv']['base_id'] == '1810.09584'
assert r1.contribs[0].raw_name == "Raphael Chetrite"
assert r1.contribs[0].role == "author"
assert r1.contribs[1].raw_name == "Shamik Gupta"
assert r1.contribs[2].raw_name == "Izaak Neri"
assert r1.contribs[3].raw_name == "Édgar Roldán"
assert r1.contribs[3].role == "author"
assert len(r1.contribs) == 4
assert r1.contribs == r2.contribs
assert r1.abstracts[0].content.startswith("The housekeeping heat is the energy exchanged")
# order isn't deterministic
assert "application/x-latex" in [a.mimetype for a in r1.abstracts]
assert "text/plain" in [a.mimetype for a in r1.abstracts]
assert r1.abstracts == r2.abstracts
assert r1.extra['arxiv']['comments'] == "7 pages, 2 figures"
assert r1.extra['arxiv']['categories'] == ["cond-mat.stat-mech", "physics.bio-ph", "physics.data-an"]
assert r1.extra == r2.extra
assert not r1.refs
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