1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
|
"""
Flask endpoints for reference (citation) endpoints. Eg, listing references
"inbound" and "outbound" from a specific release or work.
"""
import json
from flask import Response, jsonify, render_template, request
from fuzzycat.grobid_unstructured import (
grobid_api_process_citation,
grobid_ref_to_release,
transform_grobid_ref_xml,
)
from fuzzycat.simple import close_fuzzy_biblio_matches, close_fuzzy_release_matches
from fatcat_tools.references import (
RefHits,
enrich_inbound_refs,
enrich_outbound_refs,
get_inbound_refs,
get_outbound_refs,
)
from fatcat_tools.transforms.access import release_access_options
from fatcat_tools.transforms.entities import entity_to_dict
from fatcat_web import api, app
from fatcat_web.cors import crossdomain
from fatcat_web.entity_helpers import generic_get_entity
from fatcat_web.forms import ReferenceMatchForm
def _refs_web(direction, release_ident=None, work_ident=None, openlibrary_id=None, wikipedia_article=None) -> RefHits:
offset = request.args.get('offset', '0')
offset = max(0, int(offset)) if offset.isnumeric() else 0
limit = request.args.get('limit', '30')
limit = min(max(0, int(limit)), 100) if limit.isnumeric() else 30
if direction == "in":
hits = get_inbound_refs(
release_ident=release_ident,
work_ident=work_ident,
openlibrary_work=openlibrary_id,
es_client=app.es_client,
offset=offset,
limit=limit,
)
hits.result_refs = enrich_inbound_refs(
hits.result_refs,
fatcat_api_client=api,
expand="container,files,webcaptures",
)
elif direction == "out":
hits = get_outbound_refs(
release_ident=release_ident,
wikipedia_article=wikipedia_article,
work_ident=work_ident,
es_client=app.es_client,
offset=offset,
limit=limit,
)
hits.result_refs = enrich_outbound_refs(
hits.result_refs,
fatcat_api_client=api,
expand="container,files,webcaptures",
)
else:
raise ValueError()
return hits
@app.route('/release/<string(length=26):ident>/refs-in', methods=['GET'])
def release_view_refs_inbound(ident):
if request.accept_mimetypes.best == "application/json":
return release_view_refs_inbound_json(ident)
release = generic_get_entity("release", ident)
hits = _refs_web("in", release_ident=ident)
return render_template('release_view_fuzzy_refs.html', direction="in", entity=release, hits=hits), 200
@app.route('/release/<string(length=26):ident>/refs-out', methods=['GET'])
def release_view_refs_outbound(ident):
if request.accept_mimetypes.best == "application/json":
return release_view_refs_outbound_json(ident)
release = generic_get_entity("release", ident)
hits = _refs_web("out", release_ident=ident)
return render_template('release_view_fuzzy_refs.html', direction="out", entity=release, hits=hits), 200
@app.route('/openlibrary/OL<int:id_num>W/refs-in', methods=['GET'])
def openlibrary_view_refs_inbound(id_num):
if request.accept_mimetypes.best == "application/json":
return openlibrary_view_refs_inbound_json(id_num)
openlibrary_id = f"OL{id_num}W"
hits = _refs_web("in", openlibrary_id=openlibrary_id)
return render_template('openlibrary_view_fuzzy_refs.html', openlibrary_id=openlibrary_id, direction="in", hits=hits), 200
@app.route('/wikipedia/<string(length=2):wiki_lang>:<string:wiki_article>/refs-out', methods=['GET'])
def wikipedia_view_refs_outbound(wiki_lang: str, wiki_article: str):
if request.accept_mimetypes.best == "application/json":
return wikipedia_view_refs_outbound_json(wiki_lang, wiki_article)
wiki_url = f"https://{wiki_lang}.wikipedia.org/wiki/{wiki_article}"
wiki_article = wiki_article.replace('_', ' ')
wikipedia_article = wiki_lang + ":" + wiki_article
hits = _refs_web("out", wikipedia_article=wikipedia_article)
return render_template('wikipedia_view_fuzzy_refs.html', wiki_article=wiki_article, wiki_lang=wiki_lang, wiki_url=wiki_url, direction="out", hits=hits), 200
@app.route('/reference/match', methods=['GET', 'POST'])
def reference_match():
grobid_status = None
grobid_dict = None
form = ReferenceMatchForm()
if not form.is_submitted() and request.args.get('submit_type'):
form = ReferenceMatchForm(request.args)
if form.is_submitted() or request.args.get('title'):
if form.validate():
if form.submit_type.data == 'parse':
resp_xml = grobid_api_process_citation(form.raw_citation.data)
if not resp_xml:
grobid_status = "failed"
return render_template('reference_match.html', form=form, grobid_status=grobid_status), 400
grobid_dict = transform_grobid_ref_xml(resp_xml)
if not grobid_dict:
grobid_status = "empty"
return render_template('reference_match.html', form=form, grobid_status=grobid_status), 200
#print(grobid_dict)
release_stub = grobid_ref_to_release(grobid_dict)
# remove empty values from GROBID parsed dict
grobid_dict = {k: v for k, v in grobid_dict.items() if v is not None}
form = ReferenceMatchForm.from_grobid_parse(grobid_dict, form.raw_citation.data)
grobid_status = "success"
matches = close_fuzzy_release_matches(es_client=app.es_client, release=release_stub, match_limit=10) or []
elif form.submit_type.data == 'match':
matches = close_fuzzy_biblio_matches(es_client=app.es_client, biblio=form.data, match_limit=10) or []
else:
raise NotImplementedError()
for m in matches:
# expand releases more completely
m.release = api.get_release(m.release.ident, expand="container,files,filesets,webcaptures", hide="abstract,refs")
# hack in access options
m.access_options = release_access_options(m.release)
return render_template('reference_match.html', form=form, grobid_dict=grobid_dict, grobid_status=grobid_status, matches=matches), 200
elif form.errors:
return render_template('reference_match.html', form=form), 400
return render_template('reference_match.html', form=form), 200
### Pseudo-APIs #############################################################
@app.route('/release/<string(length=26):ident>/refs-out.json', methods=['GET', 'OPTIONS'])
@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
def release_view_refs_outbound_json(ident):
hits = _refs_web("out", release_ident=ident)
return Response(hits.json(exclude_unset=True), mimetype="application/json")
@app.route('/release/<string(length=26):ident>/refs-in.json', methods=['GET', 'OPTIONS'])
@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
def release_view_refs_inbound_json(ident):
hits = _refs_web("in", release_ident=ident)
return Response(hits.json(exclude_unset=True), mimetype="application/json")
@app.route('/openlibrary/OL<int:id_num>W/refs-in.json', methods=['GET', 'OPTIONS'])
@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
def openlibrary_view_refs_inbound_json(id_num):
openlibrary_id = f"OL{id_num}W"
hits = _refs_web("in", openlibrary_id=openlibrary_id)
return Response(hits.json(exclude_unset=True), mimetype="application/json")
@app.route('/wikipedia/<string(length=2):wiki_lang>:<string:wiki_article>/refs-out.json', methods=['GET', 'OPTIONS'])
@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
def wikipedia_view_refs_outbound_json(wiki_lang: str, wiki_article: str):
wiki_article = wiki_article.replace('_', ' ')
wikipedia_article = wiki_lang + ":" + wiki_article
hits = _refs_web("out", wikipedia_article=wikipedia_article)
return Response(hits.json(exclude_unset=True), mimetype="application/json")
@app.route('/reference/match.json', methods=['GET', 'OPTIONS'])
@crossdomain(origin='*',headers=['access-control-allow-origin','Content-Type'])
def reference_match_json():
form = ReferenceMatchForm(request.args)
if form.validate():
if form.submit_type.data == 'match':
matches = close_fuzzy_biblio_matches(es_client=app.es_client, biblio=form.data, match_limit=10) or []
else:
raise NotImplementedError()
resp = []
for m in matches:
# expand releases more completely
m.release = api.get_release(m.release.ident, expand="container,files,filesets,webcaptures", hide="abstract,refs")
# hack in access options
m.access_options = release_access_options(m.release)
# and manually convert to dict (for jsonify)
info = m.__dict__
info['release'] = entity_to_dict(m.release)
info['access_options'] = [o.dict() for o in m.access_options]
resp.append(info)
return jsonify(resp), 200
else:
return Response(json.dumps(dict(errors=form.errors)), mimetype="application/json", status=400)
|
