summaryrefslogtreecommitdiffstats
path: root/python/fatcat_web/forms.py
blob: dd322cffe420d24f47a3bb2767d52beba389eb3d (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416

"""
Note: in thoery could use, eg, https://github.com/christabor/swagger_wtforms,
but can't find one that is actually maintained.
"""

from flask_wtf import FlaskForm
from wtforms import SelectField, DateField, StringField, IntegerField, \
    HiddenField, FormField, FieldList, validators

from fatcat_openapi_client import ContainerEntity, CreatorEntity, FileEntity, \
    ReleaseEntity, ReleaseContrib, FileUrl, ReleaseExtIds

release_type_options = [
    ('', 'Unknown (blank)'),
    ('article-journal', 'Journal Article'),
    ('paper-conference', 'Conference Proceeding'),
    ('article', 'Article (non-journal)'),
    ('book', 'Book'),
    ('chapter', 'Book Chapter'),
    ('dataset', 'Dataset'),
    ('stub', 'Invalid/Stub'),
]
release_stage_options = [
    ('', 'Unknown (blank)'),
    ('draft', 'Draft'),
    ('submitted', 'Submitted'),
    ('accepted', 'Accepted'),
    ('published', 'Published'),
    ('updated', 'Updated'),
]
role_type_options = [
    ('author', 'Author'),
    ('editor', 'Editor'),
    ('translator', 'Translator'),
]

class EntityEditForm(FlaskForm):
    editgroup_id = StringField('Editgroup ID',
        [validators.Optional(True),
         validators.Length(min=26, max=26)])
    editgroup_description = StringField('Editgroup Description',
        [validators.Optional(True)])
    edit_description = StringField('Description of Changes',
        [validators.Optional(True)])

class ReleaseContribForm(FlaskForm):
    class Meta:
        # this is a sub-form, so disable CSRF
        csrf = False

    #surname
    #given_name
    #creator_id (?)
    #orcid (for match?)
    prev_index = HiddenField('prev_revision index', default=None)
    raw_name = StringField('Display Name',
        [validators.DataRequired()])
    role = SelectField(
        [validators.DataRequired()],
        choices=role_type_options,
        default='author')

RELEASE_SIMPLE_ATTRS = ['title', 'original_title', 'work_id', 'container_id',
    'release_type', 'release_stage', 'release_date', 'volume', 'issue',
    'pages', 'publisher', 'language', 'license_slug']

RELEASE_EXTID_ATTRS = ['doi', 'wikidata_qid', 'isbn13', 'pmid', 'pmcid']

class ReleaseEntityForm(EntityEditForm):
    """
    TODO:
    - field types: fatcat id
    - date
    """
    title = StringField('Title',
        [validators.DataRequired()])
    original_title = StringField('Original Title')
    work_id = StringField('Work FCID',
        [validators.Optional(True),
         validators.Length(min=26, max=26)])
    container_id = StringField('Container FCID',
        [validators.Optional(True),
         validators.Length(min=26, max=26)])
    release_type = SelectField('Release Type',
        [validators.DataRequired()],
        choices=release_type_options,
        default='')
    release_stage = SelectField(choices=release_stage_options)
    release_date = DateField('Release Date',
        [validators.Optional(True)])
    #release_year
    doi = StringField('DOI',
        [validators.Regexp('^10\..*\/.*', message="DOI must be valid"),
         validators.Optional(True)])
    wikidata_qid = StringField('Wikidata QID')
    isbn13 = StringField('ISBN-13')
    pmid = StringField('PubMed Id')
    pmcid = StringField('PubMed Central Id')
    #core_id
    #arxiv_id
    #jstor_id
    volume = StringField('Volume')
    issue = StringField('Issue')
    pages = StringField('Pages')
    publisher = StringField('Publisher (optional)')
    language = StringField('Language (code)')
    license_slug = StringField('License (slug)')
    contribs = FieldList(FormField(ReleaseContribForm))
    #refs
    #abstracts

    @staticmethod
    def from_entity(re):
        """
        Initializes form with values from an existing release entity.
        """
        ref = ReleaseEntityForm()
        for simple_attr in RELEASE_SIMPLE_ATTRS:
            a = getattr(ref, simple_attr)
            a.data = getattr(re, simple_attr)
        for extid_attr in RELEASE_EXTID_ATTRS:
            a = getattr(ref, extid_attr)
            a.data = getattr(re.ext_ids, extid_attr)
        for i, c in enumerate(re.contribs):
            rcf = ReleaseContribForm()
            rcf.prev_index = i
            rcf.role = c.role
            rcf.raw_name = c.raw_name
            ref.contribs.append_entry(rcf)
        return ref

    def to_entity(self):
        assert(self.title.data)
        entity = ReleaseEntity(title=self.title.data, ext_ids=ReleaseExtIds())
        self.update_entity(entity)
        return entity

    def update_entity(self, re):
        """
        Mutates a release entity in place, updating fields with values from
        this form.

        Form must be validated *before* calling this function.
        """
        for simple_attr in RELEASE_SIMPLE_ATTRS:
            a = getattr(self, simple_attr).data
            # special case blank strings
            if a == '':
                a = None
            setattr(re, simple_attr, a)
        for extid_attr in RELEASE_EXTID_ATTRS:
            a = getattr(self, simple_attr).data
            # special case blank strings
            if a == '':
                a = None
            setattr(re.ext_ids, simple_attr, a)
        # bunch of complexity here to preserve old contrib metadata (eg,
        # affiliation and extra) not included in current forms
        # TODO: this may be broken; either way needs tests
        if re.contribs:
            old_contribs = re.contribs.copy()
            re.contribs = []
        else:
            old_contribs = []
            re.contribs = []
        for c in self.contribs:
            if c.prev_index.data not in ('', None):
                rc = old_contribs[int(c.prev_index.data)]
                rc.role = c.role.data or None
                rc.raw_name = c.raw_name.data or None
            else:
                rc = ReleaseContrib(
                    role=c.role.data or None,
                    raw_name=c.raw_name.data or None,
                )
            re.contribs.append(rc)
        if self.edit_description.data:
            re.edit_extra = dict(description=self.edit_description.data)

container_type_options = (
    ('', 'Unknown (blank)'),
    ('journal', 'Scholarly Journal'),
    ('proceedings', 'Proceedings'),
    ('book-series', 'Book Series'),
    ('blog', 'Blog'),
    ('magazine', 'Magazine'),
    ('trade', 'Trade Magazine'),
    ('test', 'Test / Dummy'),
)

CONTAINER_SIMPLE_ATTRS = ['name', 'container_type', 'publisher', 'issnl',
    'wikidata_qid']
CONTAINER_EXTRA_ATTRS = ['issne', 'issnp', 'original_name', 'country']

class ContainerEntityForm(EntityEditForm):
    name = StringField('Name/Title',
        [validators.DataRequired()])
    container_type = SelectField('Container Type',
        [validators.Optional(True)],
        choices=container_type_options,
        default='')
    publisher = StringField("Publisher")
    issnl = StringField("ISSN-L (linking)")
    issne = StringField("ISSN (electronic)")
    issnp = StringField("ISSN (print)")
    original_name = StringField("Original Name (native language)")
    country = StringField("Country of Publication (ISO code)")
    wikidata_qid = StringField('Wikidata QID')
    urls = FieldList(
        StringField("Container URLs",
            [validators.DataRequired(),
             validators.URL(require_tld=False)]))

    @staticmethod
    def from_entity(ce):
        """
        Initializes form with values from an existing container entity.
        """
        cef = ContainerEntityForm()
        for simple_attr in CONTAINER_SIMPLE_ATTRS:
            a = getattr(cef, simple_attr)
            a.data = getattr(ce, simple_attr)
        if ce.extra:
            for k in CONTAINER_EXTRA_ATTRS:
                if ce.extra.get(k):
                    a = getattr(cef, k)
                    a.data = ce.extra[k]
            if ce.extra.get('urls'):
                for url in ce.extra['urls']:
                    cef.urls.append_entry(url)
        return cef

    def to_entity(self):
        assert(self.name.data)
        entity = ContainerEntity(name=self.name.data)
        self.update_entity(entity)
        return entity

    def update_entity(self, ce):
        """
        Mutates a container entity in place, updating fields with values from
        this form.

        Form must be validated *before* calling this function.
        """
        for simple_attr in CONTAINER_SIMPLE_ATTRS:
            a = getattr(self, simple_attr).data
            # special case blank strings
            if a == '':
                a = None
            setattr(ce, simple_attr, a)
        if not ce.extra:
            ce.extra = dict()
        for extra_attr in CONTAINER_EXTRA_ATTRS:
            a = getattr(self, extra_attr).data
            if a and a != '':
                ce.extra[extra_attr] = a
        extra_urls = []
        for url in self.urls:
            extra_urls.append(url.data)
        if extra_urls:
            ce.extra['urls'] = extra_urls
        if self.edit_description.data:
            ce.edit_extra = dict(description=self.edit_description.data)
        if not ce.extra:
            ce.extra = None

url_rel_options = [
    ('web', 'Public Web'),
    ('webarchive', 'Web Archive'),
    ('repository', 'Repository'),
    ('archive', 'Preservation Archive'),
    ('academicsocial', 'Academic Social Network'),
    ('publisher', 'Publisher'),
    ('dweb', 'Decentralized Web'),
    ('aggregator', 'Aggregator'),
]

FILE_SIMPLE_ATTRS = ['size', 'md5', 'sha1', 'sha256', 'mimetype']

class FileUrlForm(FlaskForm):
    class Meta:
        # this is a sub-form, so disable CSRF
        csrf = False

    url = StringField('Display Name',
        [validators.DataRequired(),
         validators.URL(require_tld=False)])
    rel = SelectField(
        [validators.DataRequired()],
        choices=url_rel_options,
        default='web')

class FileEntityForm(EntityEditForm):
    size = IntegerField('Size (bytes)',
        [validators.DataRequired()])
        # TODO: positive definite
    md5 = StringField("MD5",
        [validators.Optional(True),
         validators.Length(min=32, max=32)])
    sha1 = StringField("SHA-1",
        [validators.DataRequired(),
         validators.Length(min=40, max=40)])
    sha256 = StringField("SHA-256",
        [validators.Optional(True),
         validators.Length(min=64, max=64)])
    urls = FieldList(FormField(FileUrlForm))
    mimetype = StringField("Mimetype")
    release_ids = FieldList(
        StringField("Release FCID",
            [validators.DataRequired(),
            validators.Length(min=26, max=26)]))

    @staticmethod
    def from_entity(fe):
        """
        Initializes form with values from an existing file entity.
        """
        ref = FileEntityForm()
        for simple_attr in FILE_SIMPLE_ATTRS:
            a = getattr(ref, simple_attr)
            a.data = getattr(fe, simple_attr)
        for i, c in enumerate(fe.urls):
            ruf = FileUrlForm()
            ruf.rel = c.rel
            ruf.url = c.url
            ref.urls.append_entry(ruf)
        for r in fe.release_ids:
            ref.release_ids.append_entry(r)
        return ref

    def to_entity(self):
        assert(self.sha1.data)
        entity = FileEntity()
        self.update_entity(entity)
        return entity

    def update_entity(self, fe):
        """
        Mutates in place, updating fields with values from this form.

        Form must be validated *before* calling this function.
        """
        for simple_attr in FILE_SIMPLE_ATTRS:
            a = getattr(self, simple_attr).data
            # be flexible about hash capitalization
            if simple_attr in ('md5', 'sha1', 'sha256'):
                a = a.lower()
            # special case blank strings
            if a == '':
                a = None
            setattr(fe, simple_attr, a)
        fe.urls = []
        for u in self.urls:
            fe.urls.append(FileUrl(
                rel=u.rel.data or None,
                url=u.url.data or None,
            ))
        fe.release_ids = []
        for ri in self.release_ids:
            fe.release_ids.append(ri.data)
        if self.edit_description.data:
            fe.edit_extra = dict(description=self.edit_description.data)

INGEST_TYPE_OPTIONS = [
    ('pdf', 'PDF Fulltext'),
    ('html', 'HTML Fulltext'),
    ('xml', 'XML Fulltext'),
]

class SavePaperNowForm(FlaskForm):

    base_url = StringField(
        "URL",
        [validators.DataRequired(),
         validators.URL()])
    ingest_type = SelectField(
        "Content Type",
        [validators.DataRequired()],
        choices=INGEST_TYPE_OPTIONS,
        default='pdf')
    release_stage = SelectField(
        "Publication Stage",
        [validators.DataRequired()],
        choices=release_stage_options,
        default='')

    def to_ingest_request(self, release, ingest_request_source='savepapernow'):
        base_url = self.base_url.data
        ext_ids = release.ext_ids.to_dict()
        # by default this dict has a bunch of empty values
        ext_ids = dict([(k, v) for (k, v) in ext_ids.items() if v])
        ingest_request = {
            'ingest_type': self.ingest_type.data,
            'ingest_request_source': ingest_request_source,
            'link_source': 'spn',
            'link_source_id': release.ident,
            'base_url': base_url,
            'fatcat': {
                'release_ident': release.ident,
                'work_ident': release.work_id,
            },
            'ext_ids': ext_ids,
        }
        if self.release_stage.data:
            ingest_request['release_stage'] = self.release_stage.data

        if release.ext_ids.doi and base_url == "https://doi.org/{}".format(release.ext_ids.doi):
            ingest_request['link_source'] = 'doi'
            ingest_request['link_source_id'] = release.ext_ids.doi
        elif release.ext_ids.arxiv and base_url == "https://arxiv.org/pdf/{}.pdf".format(release.ext_ids.arxiv):
            ingest_request['link_source'] = 'arxiv'
            ingest_request['link_source_id'] = release.ext_ids.arxiv
        return ingest_request