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|
import datetime
from typing import Any, Dict, List, Optional
import fatcat_openapi_client
from fatcat_openapi_client import (
ApiClient,
FileEntity,
FilesetEntity,
FilesetUrl,
FileUrl,
WebcaptureEntity,
)
from .common import EntityImporter, filesets_very_similar, make_rel_url
class IngestFileResultImporter(EntityImporter):
def __init__(
self, api: fatcat_openapi_client.ApiClient, require_grobid: bool = True, **kwargs
) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Files crawled from web using sandcrawler ingest tool"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.IngestFileResultImporter")
kwargs["do_updates"] = kwargs.get("do_updates", False)
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
self.use_glutton_match = False
self.default_link_rel = kwargs.get("default_link_rel", "web")
assert self.default_link_rel
self.require_grobid = require_grobid
if self.require_grobid:
print("Requiring GROBID status == 200 (for PDFs)")
else:
print("NOT checking GROBID success")
self.ingest_request_source_allowlist = [
"fatcat-changelog",
"fatcat-ingest-container",
"fatcat-ingest",
"arabesque",
#'mag-corpus',
#'mag',
"unpaywall-corpus",
"unpaywall",
#'s2-corpus',
#'s2',
"doaj",
"dblp",
]
if kwargs.get("skip_source_allowlist", False):
self.ingest_request_source_allowlist = []
def want_file(self, row: Dict[str, Any]) -> bool:
"""
File-specific part of want(). Generic across general ingest and save-paper-now.
"""
if not row.get("file_meta"):
self.counts["skip-file-meta"] += 1
return False
# type-specific filters
if row["request"].get("ingest_type") == "pdf":
if self.require_grobid and row.get("grobid", {}).get("status_code") != 200:
self.counts["skip-grobid"] += 1
return False
if row["file_meta"].get("mimetype") not in ("application/pdf",):
self.counts["skip-mimetype"] += 1
return False
elif row["request"].get("ingest_type") == "xml":
if row["file_meta"].get("mimetype") not in (
"application/xml",
"application/jats+xml",
"application/tei+xml",
"text/xml",
):
self.counts["skip-mimetype"] += 1
return False
elif row["request"].get("ingest_type") in ["component", "src", "dataset-file"]:
# we rely on sandcrawler for these checks
pass
else:
self.counts["skip-ingest-type"] += 1
return False
return True
def want_ingest(self, row: Dict[str, Any]) -> bool:
"""
Sandcrawler ingest-specific part of want(). Generic across file and
webcapture ingest.
"""
if row.get("hit") is not True:
self.counts["skip-hit"] += 1
return False
source = row["request"].get("ingest_request_source")
if not source:
self.counts["skip-ingest_request_source"] += 1
return False
if (
self.ingest_request_source_allowlist
and source not in self.ingest_request_source_allowlist
):
self.counts["skip-ingest_request_source"] += 1
return False
if row["request"].get("link_source") not in (
"arxiv",
"pmc",
"unpaywall",
"doi",
"mag",
"s2",
"doaj",
"dblp",
):
self.counts["skip-link-source"] += 1
return False
if source.startswith("savepapernow"):
# never process async savepapernow requests
self.counts["skip-savepapernow"] += 1
return False
return True
def want(self, row: Dict[str, Any]) -> bool:
"""
Overall logic here probably needs work (TODO):
- Direct ingests via DOI from fatcat-changelog should probably go
through regardless of GROBID status
- We should filter/block things like single-page PDFs here
- public/anonymous submissions could require successful biblio-glutton
match, or some other sanity check on the fatcat side (eg, fuzzy title
match)
- handle the case of release_stage not being 'published'; if pre-print,
potentially create a new release.
The current logic is intentionally conservative as a first step.
"""
if not self.want_ingest(row):
return False
if not self.want_file(row):
return False
return True
def parse_ingest_release_ident(self, row: Dict[str, Any]) -> Optional[str]:
request = row["request"]
fatcat = request.get("fatcat")
release_ident = None
if fatcat and fatcat.get("release_ident"):
release_ident = fatcat.get("release_ident")
elif request.get("ext_ids"):
# if no fatcat ident, try extids
for extid_type in ("doi", "pmid", "pmcid", "arxiv", "doaj", "dblp"):
extid = request["ext_ids"].get(extid_type)
if not extid:
continue
if extid_type == "doi":
extid = extid.lower()
try:
release = self.api.lookup_release(**{extid_type: extid})
except fatcat_openapi_client.rest.ApiException as err:
if err.status == 404:
continue
elif err.status == 400:
self.counts["warn-extid-invalid"] += 1
continue
raise err
# verify release_stage
if request.get("release_stage") and release.release_stage:
if request["release_stage"] != release.release_stage:
self.counts["skip-release-stage"] += 1
return None
release_ident = release.ident
break
if self.use_glutton_match and not release_ident and row.get("grobid"):
# try biblio-glutton extracted hit
if row["grobid"].get("fatcat_release"):
release_ident = row["grobid"]["fatcat_release"].split("_")[-1]
self.counts["glutton-match"] += 1
return release_ident
def parse_terminal(self, row: Dict[str, Any]) -> Optional[Dict[str, Any]]:
terminal = row.get("terminal")
if not terminal:
# support old cdx-only ingest results
cdx = row.get("cdx")
if not cdx:
return None
else:
terminal = {
"terminal_url": cdx["url"],
"terminal_dt": cdx["datetime"],
"terminal_status_code": cdx.get("status_code") or cdx.get("http_status"),
}
# work around old schema
if "terminal_url" not in terminal:
terminal["terminal_url"] = terminal["url"]
if "terminal_dt" not in terminal:
terminal["terminal_dt"] = terminal["dt"]
# convert CDX-style digits to ISO-style timestamp
assert len(terminal["terminal_dt"]) == 14
terminal["terminal_timestamp"] = (
datetime.datetime.strptime(terminal["terminal_dt"], "%Y%m%d%H%M%S").isoformat()
+ "Z"
)
return terminal
def parse_urls(self, row: Dict[str, Any], terminal: Dict[str, Any]) -> List[FileUrl]:
request = row["request"]
default_rel = self.default_link_rel
if request.get("link_source") == "doi":
default_rel = "publisher"
default_rel = request.get("rel", default_rel)
url = make_rel_url(terminal["terminal_url"], default_rel)
if not url:
self.counts["skip-url"] += 1
return None
wayback = "https://web.archive.org/web/{}/{}".format(
terminal["terminal_dt"], terminal["terminal_url"]
)
urls = [url, ("webarchive", wayback)]
urls = [FileUrl(rel=rel, url=url) for (rel, url) in urls]
return urls
def parse_edit_extra(self, row: Dict[str, Any]) -> Dict[str, Any]:
request = row["request"]
edit_extra = dict()
if request.get("edit_extra"):
edit_extra = request["edit_extra"]
if request.get("ingest_request_source"):
edit_extra["ingest_request_source"] = request["ingest_request_source"]
if request.get("link_source") and request.get("link_source_id"):
edit_extra["link_source"] = request["link_source"]
edit_extra["link_source_id"] = request["link_source_id"]
if edit_extra["link_source"] == "doi":
edit_extra["link_source_id"] = edit_extra["link_source_id"].lower()
# GROBID metadata, for SPN requests (when there might not be 'success')
if request.get("ingest_type") == "pdf":
if row.get("grobid") and row["grobid"].get("status") != "success":
edit_extra["grobid_status_code"] = row["grobid"]["status_code"]
edit_extra["grobid_version"] = row["grobid"].get("grobid_version")
return edit_extra
def parse_record(self, row: Dict[str, Any]) -> FileEntity:
request = row["request"]
file_meta = row["file_meta"]
# double check that want() filtered request correctly (eg, old requests)
if request.get("ingest_type") not in ("pdf", "xml"):
self.counts["skip-ingest-type"] += 1
return None
assert (request["ingest_type"], file_meta["mimetype"]) in [
("pdf", "application/pdf"),
("xml", "application/xml"),
("xml", "application/jats+xml"),
("xml", "application/tei+xml"),
("xml", "text/xml"),
]
# identify release by fatcat ident, or extid lookup, or biblio-glutton match
release_ident = self.parse_ingest_release_ident(row)
if not release_ident:
self.counts["skip-release-not-found"] += 1
return None
terminal = self.parse_terminal(row)
if not terminal:
# TODO: support archive.org hits?
self.counts["skip-no-terminal"] += 1
return None
urls = self.parse_urls(row, terminal)
fe = FileEntity(
md5=file_meta["md5hex"],
sha1=file_meta["sha1hex"],
sha256=file_meta["sha256hex"],
size=file_meta["size_bytes"],
mimetype=file_meta["mimetype"],
release_ids=[release_ident],
urls=urls,
)
edit_extra = self.parse_edit_extra(row)
if edit_extra:
fe.edit_extra = edit_extra
return fe
def try_update(self, fe: FileEntity) -> bool:
# lookup sha1, or create new entity
existing = None
try:
existing = self.api.lookup_file(sha1=fe.sha1)
except fatcat_openapi_client.rest.ApiException as err:
if err.status != 404:
raise err
# check for existing edits-in-progress with same file hash
for other in self._entity_queue:
if other.sha1 == fe.sha1:
self.counts["skip-in-queue"] += 1
return False
if not existing:
return True
# NOTE: the following checks all assume there is an existing item
if (fe.release_ids[0] in existing.release_ids) and existing.urls:
# TODO: could still, in theory update with the new URL?
self.counts["exists"] += 1
return False
if not self.do_updates:
self.counts["skip-update-disabled"] += 1
return False
# TODO: for now, never update
self.counts["skip-update-disabled"] += 1
return False
def insert_batch(self, batch: List[FileEntity]) -> None:
if self.submit_mode:
eg = self.api.create_editgroup(
fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
)
)
for fe in batch:
self.api.create_file(eg.editgroup_id, fe)
self.api.update_editgroup(eg.editgroup_id, eg, submit=True)
else:
self.api.create_file_auto_batch(
fatcat_openapi_client.FileAutoBatch(
editgroup=fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
),
entity_list=batch,
)
)
class SavePaperNowFileImporter(IngestFileResultImporter):
"""
This worker ingests from the same feed as IngestFileResultImporter, but
only imports files from anonymous save-paper-now requests, and "submits"
them for further human review (as opposed to accepting by default).
"""
def __init__(self, api: ApiClient, submit_mode: bool = True, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Files crawled after a public 'Save Paper Now' request"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.SavePaperNowFileImporter")
kwargs["submit_mode"] = submit_mode
kwargs["require_grobid"] = False
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
def want(self, row: Dict[str, Any]) -> bool:
source = row["request"].get("ingest_request_source")
if not source:
self.counts["skip-ingest_request_source"] += 1
return False
if not source.startswith("savepapernow"):
self.counts["skip-not-savepapernow"] += 1
return False
if row.get("hit") is not True:
self.counts["skip-hit"] += 1
return False
if not self.want_file(row):
return False
return True
class IngestWebResultImporter(IngestFileResultImporter):
"""
Variant of IngestFileResultImporter for processing HTML ingest requests
into webcapture objects.
"""
def __init__(self, api: ApiClient, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Webcaptures crawled from web using sandcrawler ingest tool"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.IngestWebResultImporter")
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
def want(self, row: Dict[str, Any]) -> bool:
if not self.want_ingest(row):
return False
# webcapture-specific filters
if row["request"].get("ingest_type") != "html":
self.counts["skip-ingest-type"] += 1
return False
if not row.get("file_meta"):
self.counts["skip-file-meta"] += 1
return False
if row["file_meta"].get("mimetype") not in ("text/html", "application/xhtml+xml"):
self.counts["skip-mimetype"] += 1
return False
return True
def parse_record(self, row: Dict[str, Any]) -> Optional[WebcaptureEntity]:
request = row["request"]
file_meta = row["file_meta"]
# double check that want() filtered request correctly (eg, old requests)
if request.get("ingest_type") != "html":
self.counts["skip-ingest-type"] += 1
return None
if file_meta["mimetype"] not in ("text/html", "application/xhtml+xml"):
self.counts["skip-mimetype"] += 1
return None
# identify release by fatcat ident, or extid lookup
release_ident = self.parse_ingest_release_ident(row)
if not release_ident:
self.counts["skip-release-not-found"] += 1
return None
terminal = self.parse_terminal(row)
if not terminal:
# TODO: support archive.org hits?
self.counts["skip-no-terminal"] += 1
return None
urls = self.parse_urls(row, terminal)
archive_urls = [u for u in urls if u.rel == "webarchive"]
if terminal["terminal_status_code"] != 200:
self.counts["skip-terminal-status-code"] += 1
return None
terminal_cdx = row["cdx"]
if "revisit_cdx" in row:
terminal_cdx = row["revisit_cdx"]
assert terminal_cdx["surt"]
if terminal_cdx["url"] != terminal["terminal_url"]:
self.counts["skip-terminal-url-mismatch"] += 1
return None
wc_cdx = []
# primary resource first
wc_cdx.append(
fatcat_openapi_client.WebcaptureCdxLine(
surt=terminal_cdx["surt"],
timestamp=terminal["terminal_timestamp"],
url=terminal["terminal_url"],
mimetype=file_meta["mimetype"],
status_code=terminal["terminal_status_code"],
sha1=file_meta["sha1hex"],
sha256=file_meta["sha256hex"],
size=file_meta["size_bytes"],
)
)
for resource in row.get("html_resources", []):
timestamp = resource["timestamp"]
if "+" not in timestamp and "Z" not in timestamp:
timestamp += "Z"
wc_cdx.append(
fatcat_openapi_client.WebcaptureCdxLine(
surt=resource["surt"],
timestamp=timestamp,
url=resource["url"],
mimetype=resource.get("mimetype"),
size=resource.get("size"),
sha1=resource.get("sha1hex"),
sha256=resource.get("sha256hex"),
)
)
wc = fatcat_openapi_client.WebcaptureEntity(
cdx=wc_cdx,
archive_urls=archive_urls,
original_url=terminal["terminal_url"],
timestamp=terminal["terminal_timestamp"],
release_ids=[release_ident],
)
edit_extra = self.parse_edit_extra(row)
if edit_extra:
wc.edit_extra = edit_extra
return wc
def try_update(self, wc: WebcaptureEntity) -> bool:
# check for existing edits-in-progress with same URL
for other in self._entity_queue:
if other.original_url == wc.original_url:
self.counts["skip-in-queue"] += 1
return False
# lookup sha1, or create new entity (TODO: API doesn't support this yet)
# existing = None
# TODO: currently only allow one release per webcapture
release = self.api.get_release(wc.release_ids[0], expand="webcaptures")
if release.webcaptures:
# check if this is an existing match, or just a similar hit
for other in release.webcaptures:
if wc.original_url == other.original_url:
# TODO: compare very similar timestamps of same time (different formats)
self.counts["exists"] += 1
return False
self.counts["skip-release-has-webcapture"] += 1
return False
# Ok, if we got here then no existing web capture for (first) release,
# so go ahead and insert!
return True
def insert_batch(self, batch: List[WebcaptureEntity]) -> None:
if self.submit_mode:
eg = self.api.create_editgroup(
fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
)
)
for fe in batch:
self.api.create_webcapture(eg.editgroup_id, fe)
self.api.update_editgroup(eg.editgroup_id, eg, submit=True)
else:
self.api.create_webcapture_auto_batch(
fatcat_openapi_client.WebcaptureAutoBatch(
editgroup=fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
),
entity_list=batch,
)
)
class SavePaperNowWebImporter(IngestWebResultImporter):
"""
Like SavePaperNowFileImporter, but for webcapture (HTML) ingest.
"""
def __init__(self, api: ApiClient, submit_mode: bool = True, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Webcaptures crawled after a public 'Save Paper Now' request"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.SavePaperNowWebImporter")
kwargs["submit_mode"] = submit_mode
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
def want(self, row: Dict[str, Any]) -> bool:
"""
Relatively custom want() here, a synthesis of other filters.
We do currently allow unknown-scope through for this specific code
path, which means allowing hit=false.
"""
source = row["request"].get("ingest_request_source")
if not source:
self.counts["skip-ingest_request_source"] += 1
return False
if not source.startswith("savepapernow"):
self.counts["skip-not-savepapernow"] += 1
return False
# webcapture-specific filters
if row["request"].get("ingest_type") != "html":
self.counts["skip-ingest-type"] += 1
return False
if not row.get("file_meta"):
self.counts["skip-file-meta"] += 1
return False
if row["file_meta"].get("mimetype") not in ("text/html", "application/xhtml+xml"):
self.counts["skip-mimetype"] += 1
return False
if row.get("status") not in ["success", "unknown-scope"]:
self.counts["skip-hit"] += 1
return False
return True
class IngestFilesetResultImporter(IngestFileResultImporter):
"""
Variant of IngestFileResultImporter for processing, eg, dataset ingest
results into fileset objects.
"""
def __init__(self, api: ApiClient, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Filesets crawled from web using sandcrawler ingest tool"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.IngestFilesetResultImporter")
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
self.max_file_count = 300
def want_fileset(self, row: Dict[str, Any]) -> bool:
manifest: Optional[List[Any]] = row.get("manifest")
if not manifest or len(manifest) == 0:
self.counts["skip-empty-manifest"] += 1
return False
if len(manifest) == 1:
self.counts["skip-single-file"] += 1
return False
if len(manifest) > self.max_file_count:
self.counts["skip-too-many-files"] += 1
return False
return True
def want(self, row: Dict[str, Any]) -> bool:
if not self.want_ingest(row):
return False
# fileset-specific filters
if row["request"].get("ingest_type") not in [
"dataset",
]:
self.counts["skip-ingest-type"] += 1
return False
if not self.want_fileset(row):
return False
return True
def parse_fileset_urls(self, row: Dict[str, Any]) -> List[FilesetUrl]:
if not row.get("ingest_strategy"):
return []
strategy = row["ingest_strategy"]
urls = []
if strategy == "archiveorg-fileset" and row.get("archiveorg_item_name"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://archive.org/download/{row['archiveorg_item_name']}/",
rel="archive-base",
)
)
if strategy.startswith("web-") and row.get("platform_base_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://web.archive.org/web/{row['web_base_url_dt']}/{row['web_base_url']}",
rel="webarchive-base",
)
)
if strategy == "archiveorg-fileset-bundle" and row.get("archiveorg_item_name"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://archive.org/download/{row['archiveorg_item_name']}/{row['archiveorg_bundle_path']}",
rel="archive-bundle",
)
)
if strategy == "web-fileset-bundle" and row.get("platform_bundle_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://web.archive.org/web/{row['web_bundle_url_dt']}/{row['web_bundle_url']}",
rel="webarchive-bundle",
)
)
# add any additional / platform URLs here
if row.get("platform_bundle_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["platform_bundle_url"],
rel="repository-bundle",
)
)
if row.get("platform_base_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["platform_bundle_url"],
rel="repository-base",
)
)
elif row.get("terminal"):
# fallback generic web URL
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["terminal"]["terminal_url"],
rel="web",
)
)
return urls
def parse_record(self, row: Dict[str, Any]) -> FilesetEntity:
request = row["request"]
# double check that want() filtered request correctly
if request.get("ingest_type") not in [
"dataset",
]:
self.counts["skip-ingest-type"] += 1
return None
# identify release by fatcat ident, or extid lookup
release_ident = self.parse_ingest_release_ident(row)
if not release_ident:
self.counts["skip-release-not-found"] += 1
return None
entity_extra: Dict[str, Any] = dict()
edit_extra = self.parse_edit_extra(row)
edit_extra["ingest_strategy"] = row["ingest_strategy"]
if row.get("platform"):
edit_extra["platform"] = row["platform"]
if row.get("platform_id"):
edit_extra["platform_id"] = row["platform_id"]
entity_urls = self.parse_fileset_urls(row)
if not entity_urls:
self.counts["skip-no-access-url"] += 1
return None
assert row["file_count"] == len(row["manifest"])
if row["file_count"] > self.max_file_count:
self.counts["skip-too-many-manifest-files"] += 1
return None
manifest = []
for ingest_file in row["manifest"]:
fsf = fatcat_openapi_client.FilesetFile(
path=ingest_file["path"],
size=ingest_file["size"],
md5=ingest_file["md5"],
sha1=ingest_file["sha1"],
sha256=ingest_file.get("sha256"),
extra=dict(
mimetype=ingest_file["mimetype"],
),
)
if not (fsf.md5 and fsf.sha1 and fsf.path and fsf.size):
self.counts["skip-partial-file-info"] += 1
return None
if ingest_file.get("platform_url"):
# TODO: should we include this?
fsf.extra["original_url"] = ingest_file["platform_url"]
if ingest_file.get("terminal_url") and ingest_file.get("terminal_dt"):
fsf.extra[
"wayback_url"
] = f"https://web.archive.org/web/{ingest_file['terminal_dt']}/{ingest_file['terminal_url']}"
manifest.append(fsf)
fe = fatcat_openapi_client.FilesetEntity(
manifest=manifest,
urls=entity_urls,
release_ids=[release_ident],
)
if entity_extra:
fe.extra = entity_extra
if edit_extra:
fe.edit_extra = edit_extra
return fe
def try_update(self, fse: FilesetEntity) -> bool:
# check for existing edits-in-progress with same URL
for other in self._entity_queue:
if filesets_very_similar(other, fse):
self.counts["skip-in-queue"] += 1
self.counts["skip"] += 1
return False
# lookup sha1, or create new entity (TODO: API doesn't support this yet)
# existing = None
# NOTE: in lieu of existing checks (by lookup), only allow one fileset per release
if not self.bezerk_mode:
release = self.api.get_release(fse.release_ids[0], expand="filesets")
# check if this is an existing match, or just a similar hit
for other in release.filesets or []:
if filesets_very_similar(other, fse):
self.counts["exists"] += 1
return False
# for now, being conservative and just skipping if release has any other fileset
if release.filesets:
self.counts["skip-release-has-fileset"] += 1
self.counts["skip"] += 1
return False
return True
def insert_batch(self, batch: List[FilesetEntity]) -> None:
if self.submit_mode:
eg = self.api.create_editgroup(
fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
)
)
for fe in batch:
self.api.create_fileset(eg.editgroup_id, fe)
self.api.update_editgroup(eg.editgroup_id, eg, submit=True)
else:
self.api.create_fileset_auto_batch(
fatcat_openapi_client.FilesetAutoBatch(
editgroup=fatcat_openapi_client.Editgroup(
description=self.editgroup_description, extra=self.editgroup_extra
),
entity_list=batch,
)
)
class IngestFilesetFileResultImporter(IngestFileResultImporter):
"""
Variant of IngestFileResultImporter for processing dataset (Fileset) ingest
results, which resulted in a single file, into File entities.
"""
def __init__(self, api: ApiClient, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Single files crawled from web using sandcrawler ingest tool, in dataset mode"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get(
"agent", "fatcat_tools.IngestFilesetFileResultImporter"
)
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
self.max_file_count = 300
def want_fileset(self, row: Dict[str, Any]) -> bool:
manifest: Optional[List[Any]] = row.get("manifest")
if not manifest or len(manifest) == 0:
self.counts["skip-empty-manifest"] += 1
return False
if len(manifest) > 1:
self.counts["skip-multiple-files"] += 1
return False
assert len(manifest) == 1
return True
def want(self, row: Dict[str, Any]) -> bool:
if not self.want_ingest(row):
return False
if row.get("status") != "success-file":
self.counts["skip-status"] += 1
return False
# fileset-specific filters
if row["request"].get("ingest_type") not in [
"dataset",
]:
self.counts["skip-ingest-type"] += 1
return False
if not self.want_fileset(row):
return False
return True
def parse_fileset_urls(self, row: Dict[str, Any]) -> List[FilesetUrl]:
if not row.get("ingest_strategy"):
return []
strategy = row["ingest_strategy"]
urls = []
# XXX
if strategy == "archiveorg-fileset" and row.get("archiveorg_item_name"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://archive.org/download/{row['archiveorg_item_name']}/",
rel="archive-base",
)
)
if strategy.startswith("web-") and row.get("platform_base_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://web.archive.org/web/{row['web_base_url_dt']}/{row['web_base_url']}",
rel="webarchive-base",
)
)
if strategy == "archiveorg-fileset-bundle" and row.get("archiveorg_item_name"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://archive.org/download/{row['archiveorg_item_name']}/{row['archiveorg_bundle_path']}",
rel="archive-bundle",
)
)
if strategy == "web-fileset-bundle" and row.get("platform_bundle_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=f"https://web.archive.org/web/{row['web_bundle_url_dt']}/{row['web_bundle_url']}",
rel="webarchive-bundle",
)
)
# add any additional / platform URLs here
if row.get("platform_bundle_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["platform_bundle_url"],
rel="repository-bundle",
)
)
if row.get("platform_base_url"):
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["platform_bundle_url"],
rel="repository-base",
)
)
elif row.get("terminal"):
# fallback generic web URL
urls.append(
fatcat_openapi_client.FilesetUrl(
url=row["terminal"]["terminal_url"],
rel="web",
)
)
return urls
def parse_record(self, row: Dict[str, Any]) -> FileEntity:
request = row["request"]
# double check that want() filtered request correctly
if request.get("ingest_type") not in [
"dataset",
]:
self.counts["skip-ingest-type"] += 1
return None
# identify release by fatcat ident, or extid lookup
release_ident = self.parse_ingest_release_ident(row)
if not release_ident:
self.counts["skip-release-not-found"] += 1
return None
entity_extra: Dict[str, Any] = dict()
edit_extra = self.parse_edit_extra(row)
edit_extra["ingest_strategy"] = row["ingest_strategy"]
if row.get("platform"):
edit_extra["platform"] = row["platform"]
if row.get("platform_id"):
edit_extra["platform_id"] = row["platform_id"]
assert row["file_count"] == len(row["manifest"]) == 1
file_meta = row["manifest"][0]
# print(file_meta)
assert file_meta["status"] == "success"
# add file-level access URLs
entity_urls = []
if file_meta.get("platform_url"):
entity_urls.append(FileUrl(rel="web", url=file_meta["platform_url"]))
if file_meta.get("terminal_url") and file_meta.get("terminal_dt"):
entity_urls.append(
FileUrl(
rel="webarchive",
url=f"https://web.archive.org/web/{file_meta['terminal_dt']}/{file_meta['terminal_url']}",
)
)
if row["ingest_strategy"] == "archiveorg-file":
entity_urls.append(
FileUrl(
rel="archive",
url=f"https://archive.org/download/{row['archiveorg_item_name']}/{file_meta['path']}",
)
)
if not entity_urls:
self.counts["skip-no-access-url"] += 1
return None
entity_extra = dict()
entity_extra["path"] = file_meta["path"]
# this is to work around a bug in old sandcrawler ingest code
if file_meta["md5"] == file_meta["sha1"]:
self.counts["skip-bad-hashes"] += 1
return None
fe = FileEntity(
md5=file_meta["md5"],
sha1=file_meta["sha1"],
sha256=file_meta["sha256"],
size=file_meta["size"],
mimetype=file_meta["mimetype"],
release_ids=[release_ident],
urls=entity_urls,
extra=entity_extra or None,
)
if not (fe.md5 and fe.sha1 and fe.sha256 and (fe.size is not None) and fe.mimetype):
self.counts["skip-partial-file-info"] += 1
return None
if entity_extra:
fe.extra = entity_extra
edit_extra = self.parse_edit_extra(row)
if edit_extra:
fe.edit_extra = edit_extra
return fe
class SavePaperNowFilesetImporter(IngestFilesetResultImporter):
"""
Like SavePaperNowFileImporter, but for fileset/dataset ingest.
"""
def __init__(self, api: ApiClient, submit_mode: bool = True, **kwargs) -> None:
eg_desc = (
kwargs.pop("editgroup_description", None)
or "Fileset crawled after a public 'Save Paper Now' request"
)
eg_extra = kwargs.pop("editgroup_extra", dict())
eg_extra["agent"] = eg_extra.get("agent", "fatcat_tools.SavePaperNowFilesetImporter")
kwargs["submit_mode"] = submit_mode
kwargs["do_updates"] = False
super().__init__(api, editgroup_description=eg_desc, editgroup_extra=eg_extra, **kwargs)
def want(self, row: Dict[str, Any]) -> bool:
source = row["request"].get("ingest_request_source")
if not source:
self.counts["skip-ingest_request_source"] += 1
return False
if not source.startswith("savepapernow"):
self.counts["skip-not-savepapernow"] += 1
return False
if row.get("hit") is not True:
self.counts["skip-hit"] += 1
return False
if not self.want_fileset(row):
return False
return True
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