import json import pytest from fatcat_tools.importers import IngestFileResultImporter, IngestWebResultImporter, JsonLinePusher from fixtures import * @pytest.fixture(scope="function") def ingest_importer(api): yield IngestFileResultImporter(api) @pytest.fixture(scope="function") def ingest_web_importer(api): yield IngestWebResultImporter(api) # TODO: use API to check that entities actually created... def test_ingest_importer_basic(ingest_importer): with open('tests/files/example_ingest.json', 'r') as f: JsonLinePusher(ingest_importer, f).run() def test_ingest_importer(ingest_importer): last_index = ingest_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_ingest.json', 'r') as f: ingest_importer.bezerk_mode = True counts = JsonLinePusher(ingest_importer, f).run() assert counts['insert'] == 1 assert counts['exists'] == 0 assert counts['skip'] == 1 # fetch most recent editgroup change = ingest_importer.api.get_changelog_entry(index=last_index+1) eg = change.editgroup assert eg.description assert "crawled from web" in eg.description.lower() assert eg.extra['git_rev'] assert "fatcat_tools.IngestFileResultImporter" in eg.extra['agent'] # re-insert; should skip with open('tests/files/example_ingest.json', 'r') as f: ingest_importer.reset() ingest_importer.bezerk_mode = False counts = JsonLinePusher(ingest_importer, f).run() assert counts['insert'] == 0 assert counts['exists'] == 1 assert counts['skip'] == 1 def test_ingest_importer_xml(ingest_importer): last_index = ingest_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_ingest_xml.json', 'r') as f: ingest_importer.bezerk_mode = True counts = JsonLinePusher(ingest_importer, f).run() print(counts) assert counts['insert'] == 1 assert counts['exists'] == 0 assert counts['skip'] == 0 # fetch most recent editgroup change = ingest_importer.api.get_changelog_entry(index=last_index+1) eg = change.editgroup assert eg.description assert "crawled from web" in eg.description.lower() assert eg.extra['git_rev'] assert "fatcat_tools.IngestFileResultImporter" in eg.extra['agent'] # re-import should skip with open('tests/files/example_ingest_xml.json', 'r') as f: ingest_importer.reset() ingest_importer.bezerk_mode = False counts = JsonLinePusher(ingest_importer, f).run() assert counts['insert'] == 0 assert counts['exists'] == 1 assert counts['skip'] == 0 def test_ingest_importer_web(ingest_web_importer): last_index = ingest_web_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_ingest_html.json', 'r') as f: ingest_web_importer.bezerk_mode = True counts = JsonLinePusher(ingest_web_importer, f).run() print(counts) assert counts['insert'] == 1 assert counts['exists'] == 0 assert counts['skip'] == 0 # fetch most recent editgroup change = ingest_web_importer.api.get_changelog_entry(index=last_index+1) eg = change.editgroup assert eg.description assert "crawled from web" in eg.description.lower() assert eg.extra['git_rev'] assert "fatcat_tools.IngestWebResultImporter" in eg.extra['agent'] # re-import should skip with open('tests/files/example_ingest_html.json', 'r') as f: ingest_web_importer.reset() ingest_web_importer.bezerk_mode = False counts = JsonLinePusher(ingest_web_importer, f).run() assert counts['insert'] == 0 assert counts['exists'] == 1 assert counts['skip'] == 0 def test_ingest_importer_stage(ingest_importer, api): """ Tests that ingest importer correctly handles release stage matching """ test_table = [ dict(request_stage=None, release_stage=None, status="insert"), dict(request_stage="published", release_stage=None, status="insert"), dict(request_stage=None, release_stage="draft", status="insert"), dict(request_stage="published", release_stage="published", status="insert"), dict(request_stage="draft", release_stage="published", status="skip-release-stage"), dict(request_stage="published", release_stage="draft", status="skip-release-stage"), ] ingest_importer.bezerk_mode = True with open('tests/files/example_ingest.json', 'r') as f: raw = json.loads(f.readline()) for row in test_table: #print(row) # set dummy record stage eg = quick_eg(api) r1 = api.lookup_release(doi="10.123/abc") r1.release_stage = row['release_stage'] api.update_release(eg.editgroup_id, r1.ident, r1) api.accept_editgroup(eg.editgroup_id) # set ingest request stage raw['request']['release_stage'] = row['request_stage'] ingest_importer.reset() ingest_importer.push_record(raw) counts = ingest_importer.finish() print(counts) assert counts["total"] == 1 assert counts[row['status']] == 1 def test_ingest_dict_parse(ingest_importer): with open('tests/files/example_ingest.json', 'r') as f: raw = json.loads(f.readline()) f = ingest_importer.parse_record(raw) assert f.sha1 == "00242a192acc258bdfdb151943419437f440c313" assert f.md5 == "f4de91152c7ab9fdc2a128f962faebff" assert f.mimetype == "application/pdf" assert f.size == 255629 assert len(f.urls) == 2 for u in f.urls: if u.rel == "web": assert u.url.startswith("http://journals.plos.org") if u.rel == "webarchive": assert u.url.startswith("https://web.archive.org/") assert len(f.release_ids) == 1 def test_ingest_dict_parse_old(ingest_importer): with open('tests/files/example_ingest.old.json', 'r') as f: raw = json.loads(f.readline()) # ancient ingest requests had no type; skip them f = ingest_importer.parse_record(raw) assert f == None raw['request']['ingest_type'] = 'pdf' f = ingest_importer.parse_record(raw) assert f.sha1 == "00242a192acc258bdfdb151943419437f440c313" assert f.md5 == "f4de91152c7ab9fdc2a128f962faebff" assert f.mimetype == "application/pdf" assert f.size == 255629 assert len(f.urls) == 2 for u in f.urls: if u.rel == "web": assert u.url.startswith("http://journals.plos.org") if u.rel == "webarchive": assert u.url.startswith("https://web.archive.org/") assert len(f.release_ids) == 1