import io import pytest from bs4 import BeautifulSoup from fatcat_tools.importers import DblpReleaseImporter, DblpContainerImporter, Bs4XmlLargeFilePusher, JsonLinePusher from fixtures import * @pytest.fixture(scope="function") def dblp_importer(api): with open('tests/files/dblp_container_map.tsv', 'r') as tsv_file: yield DblpReleaseImporter(api, tsv_file, bezerk_mode=True) @pytest.fixture(scope="function") def dblp_importer_existing(api): with open('tests/files/dblp_container_map.tsv', 'r') as tsv_file: yield DblpReleaseImporter(api, tsv_file, bezerk_mode=False) @pytest.fixture(scope="function") def dblp_container_importer(api): with open('tests/files/dblp_container_map.tsv', 'r') as tsv_file: with open('tests/files/ISSN-to-ISSN-L.snip.txt', 'r') as issn_file: yield DblpContainerImporter(api, issn_file, tsv_file, io.StringIO(), bezerk_mode=True) def test_dblp_importer(dblp_importer): last_index = dblp_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_dblp.xml', 'rb') as f: dblp_importer.bezerk_mode = True counts = Bs4XmlLargeFilePusher(dblp_importer, f, dblp_importer.ELEMENT_TYPES, use_lxml=True).run() #print(counts) assert counts['insert'] == 3 assert counts['exists'] == 0 assert counts['skip'] == 1 # fetch most recent editgroup change = dblp_importer.api.get_changelog_entry(index=last_index+1) eg = change.editgroup assert eg.description assert "dblp" in eg.description.lower() assert eg.extra['git_rev'] assert "fatcat_tools.DblpReleaseImporter" in eg.extra['agent'] # check that entity name mangling was fixed on import eg = dblp_importer.api.get_editgroup(eg.editgroup_id) release = dblp_importer.api.get_release(eg.edits.releases[0].ident) assert release.contribs[0].raw_name == "Moira C. Norrie" assert release.contribs[1].raw_name == "Michael H. Böhlen" last_index = dblp_importer.api.get_changelog(limit=1)[0].index with open('tests/files/example_dblp.xml', 'rb') as f: dblp_importer.bezerk_mode = False dblp_importer.reset() counts = Bs4XmlLargeFilePusher(dblp_importer, f, dblp_importer.ELEMENT_TYPES, use_lxml=True).run() #print(counts) assert counts['insert'] == 0 assert counts['exists'] == 3 assert counts['skip'] == 1 assert last_index == dblp_importer.api.get_changelog(limit=1)[0].index def test_dblp_container_importer(dblp_container_importer): last_index = dblp_container_importer.api.get_changelog(limit=1)[0].index output_tsv_map = io.StringIO() with open('tests/files/example_dblp_containers.json', 'r') as f: dblp_container_importer.bezerk_mode = True dblp_container_importer.dblp_container_map_output = output_tsv_map counts = JsonLinePusher(dblp_container_importer, f).run() assert counts['insert'] == 10 assert counts['exists'] == 0 assert counts['skip'] == 0 # fetch most recent editgroup change = dblp_container_importer.api.get_changelog_entry(index=last_index+1) eg = change.editgroup assert eg.description assert "dblp" in eg.description.lower() assert eg.extra['git_rev'] assert "fatcat_tools.DblpContainerImporter" in eg.extra['agent'] # check that entity name mangling was fixed on import eg = dblp_container_importer.api.get_editgroup(eg.editgroup_id) container = dblp_container_importer.api.get_container(eg.edits.containers[0].ident) assert container.name == "Atlantis Thinking Machines" assert container.issnl == "1877-3273" assert container.container_type == "book-series" assert container.extra['dblp']['prefix'] == "series/atlantis" assert container.extra['urls'] == ["http://link.springer.com/bookseries/10077"] last_index = dblp_container_importer.api.get_changelog(limit=1)[0].index output_tsv_map.seek(0) print(output_tsv_map.read()) output_tsv_map.seek(0) with open('tests/files/example_dblp_containers.json', 'r') as f: dblp_container_importer.reset() dblp_container_importer.bezerk_mode = False dblp_container_importer.dblp_container_map_output = io.StringIO() dblp_container_importer.read_dblp_container_map_file(output_tsv_map) counts = JsonLinePusher(dblp_container_importer, f).run() print(counts) assert counts['insert'] == 0 assert counts['exists'] == 10 assert counts['skip'] == 0 assert last_index == dblp_container_importer.api.get_changelog(limit=1)[0].index def test_dblp_xml_parse(dblp_importer): with open('tests/files/example_dblp_article.xml', 'r') as f: soup = BeautifulSoup(f, "xml") r1 = dblp_importer.parse_record(soup.find_all("article")[0]) assert r1.title == "Jim Gray, astronomer" assert r1.contribs[0].raw_name == "Alexander S. Szalay" # tested above, in LXML import path #assert r1.contribs[1].raw_name == "Michael H. Bohlen" assert r1.contribs[2].raw_name == "Nicolas Heist" # XXX: assert r1.contribs[2].extra['orcid'] == "0000-0002-4354-9138" assert r1.contribs[3].raw_name == "Jens Lehmann" assert r1.ext_ids.dblp == "journals/cacm/Szalay08" assert r1.ext_ids.doi == "10.1145/1400214.1400231" assert r1.pages == "58-65" assert r1.issue == "11" assert r1.volume == "51" assert r1.release_year == 2008 #assert r1.extra['container_name'] == "Commun. ACM" assert r1.extra['dblp']['type'] == "article"