import collections import tldextract from fatcat_openapi_client import ApiClient def check_kbart(year, archive): if not archive or not archive.get('year_spans'): return None for span in archive['year_spans']: if year >= span[0] and year <= span[1]: return True return False def test_check_kbart(): assert check_kbart(1990, dict()) == None assert check_kbart(1990, dict(year_spans=[[2000, 2000]])) == False assert check_kbart(2000, dict(year_spans=[[2000, 2000]])) == True assert check_kbart(1950, dict(year_spans=[[1900, 1920], [1990, 2000]])) == False assert check_kbart(1950, dict(year_spans=[[1900, 1920], [1930, 2000]])) == True def release_to_elasticsearch(entity, force_bool=True): """ Converts from an entity model/schema to elasticsearch oriented schema. Returns: dict Raises exception on error (never returns None) """ if entity.state in ('redirect', 'deleted'): return dict( ident = entity.ident, state = entity.state, ) elif entity.state != 'active': raise ValueError("Unhandled entity state: {}".format(entity.state)) # First, the easy ones (direct copy) release = entity t = dict( ident = release.ident, state = release.state, revision = release.revision, work_id = release.work_id, title = release.title, subtitle = release.subtitle, original_title = release.original_title, release_type = release.release_type, release_stage = release.release_stage, withdrawn_status = release.withdrawn_status, language = release.language, volume = release.volume, issue = release.issue, pages = release.pages, number = release.number, license = release.license_slug, doi = release.ext_ids.doi, pmid = release.ext_ids.pmid, pmcid = release.ext_ids.pmcid, isbn13 = release.ext_ids.isbn13, wikidata_qid = release.ext_ids.wikidata_qid, core_id = release.ext_ids.core, arxiv_id = release.ext_ids.arxiv, jstor_id = release.ext_ids.jstor, ark_id = release.ext_ids.ark, mag_id = release.ext_ids.mag, ) is_oa = None is_preserved = None is_longtail_oa = None in_kbart = None in_jstor = False in_web = False in_dweb = False in_ia = False in_ia_sim = False in_shadows = False release_year = release.release_year if release.release_date: # .isoformat() results in, eg, '2010-10-22' (YYYY-MM-DD) t['release_date'] = release.release_date.isoformat() if not release_year: release_year = release.release_date.year if release_year: t['release_year'] = release_year t['any_abstract'] = len(release.abstracts or []) > 0 t['ref_count'] = len(release.refs or []) ref_release_ids = [] for r in (release.refs or []): if r.target_release_id: ref_release_ids.append(r.target_release_id) t['ref_release_ids'] = ref_release_ids t['ref_linked_count'] = len(ref_release_ids) t['contrib_count'] = len(release.contribs or []) contrib_names = [] contrib_affiliations = [] creator_ids = [] for c in (release.contribs or []): if c.raw_name: contrib_names.append(c.raw_name) elif c.surname: contrib_names.append(c.surname) if c.creator_id: creator_ids.append(c.creator_id) if c.raw_affiliation: contrib_affiliations.append(c.raw_affiliation) t['contrib_names'] = contrib_names t['creator_ids'] = creator_ids t['affiliations'] = contrib_affiliations # TODO: mapping... probably by lookup? t['affiliation_rors'] = None container = release.container if container: t['publisher'] = container.publisher t['container_name'] = container.name # this is container.ident, not release.container_id, because there may # be a redirect involved t['container_id'] = container.ident t['container_issnl'] = container.issnl t['container_type'] = container.container_type if container.extra: c_extra = container.extra if c_extra.get('kbart') and release_year: in_jstor = check_kbart(release_year, c_extra['kbart'].get('jstor')) in_kbart = in_jstor for archive in ('portico', 'lockss', 'clockss'): in_kbart = in_kbart or check_kbart(release_year, c_extra['kbart'].get(archive)) if c_extra.get('ia'): if c_extra['ia'].get('sim') and release_year: in_ia_sim = check_kbart(release_year, c_extra['ia']['sim']) if c_extra['ia'].get('longtail_oa'): is_longtail_oa = True if c_extra.get('sherpa_romeo'): if c_extra['sherpa_romeo'].get('color') == 'white': is_oa = False if c_extra.get('default_license') and c_extra.get('default_license').startswith('CC-'): is_oa = True if c_extra.get('doaj'): if c_extra['doaj'].get('as_of'): is_oa = True if c_extra.get('road'): if c_extra['road'].get('as_of'): is_oa = True if c_extra.get('ezb'): if c_extra['ezb'].get('color') == 'green': is_oa = True if c_extra.get('szczepanski'): if c_extra['szczepanski'].get('as_of'): is_oa = True if c_extra.get('country'): t['country'] = c_extra['country'] # fall back to release-level container metadata if container not linked or # missing context if not t.get('publisher'): t['publisher'] = release.publisher if not t.get('container_name') and release.extra: t['container_name'] = release.extra.get('container_name') if release.ext_ids.jstor or (release.ext_ids.doi and release.ext_ids.doi.startswith('10.2307/')): in_jstor = True files = release.files or [] t['file_count'] = len(files) t['fileset_count'] = len(release.filesets or []) t['webcapture_count'] = len(release.webcaptures or []) any_pdf_url = None good_pdf_url = None best_pdf_url = None ia_pdf_url = None for f in files: if f.extra and f.extra.get('shadows'): # TODO: shadow check goes here in_shadows = True is_pdf = 'pdf' in (f.mimetype or '') for release_url in (f.urls or []): if not f.mimetype and 'pdf' in release_url.url.lower(): is_pdf = True if release_url.url.lower().startswith('http'): in_web = True if release_url.rel in ('dweb', 'p2p', 'ipfs', 'dat', 'torrent'): # not sure what rel will be for this stuff in_dweb = True if is_pdf: any_pdf_url = release_url.url if is_pdf and release_url.rel in ('webarchive', 'repository') and is_pdf: is_preserved = True good_pdf_url = release_url.url if '//www.jstor.org/' in release_url.url: in_jstor = True if '//web.archive.org/' in release_url.url or '//archive.org/' in release_url.url: in_ia = True if is_pdf: best_pdf_url = release_url.url ia_pdf_url = release_url.url # here is where we bake-in priority; IA-specific t['best_pdf_url'] = best_pdf_url or good_pdf_url or any_pdf_url t['ia_pdf_url'] = ia_pdf_url if release.license_slug: # TODO: more/better checks here, particularly strict *not* OA licenses if release.license_slug.startswith("CC-"): is_oa = True extra = release.extra or dict() if extra: if extra.get('is_oa'): # NOTE: not actually setting this anywhere... but could is_oa = True if extra.get('longtail_oa'): # sometimes set by GROBID/matcher is_oa = True is_longtail_oa = True if not t.get('container_name'): t['container_name'] = extra.get('container_name') if extra.get('crossref'): if extra['crossref'].get('archive'): # all crossref archives are KBART, I believe in_kbart = True # backwards compatible subtitle fetching if not t['subtitle'] and extra.get('subtitle'): if type(extra['subtitle']) == list: t['subtitle'] = extra['subtitle'][0] else: t['subtitle'] = extra['subtitle'] t['first_page'] = None if release.pages: first = release.pages.split('-')[0] first = first.replace('p', '') if first.isdigit(): t['first_page'] = first # TODO: non-numerical first pages t['ia_microfilm_url'] = None if in_ia_sim: # TODO: determine URL somehow? I think this is in flux. Will probably # need extra metadata in the container extra field. # special case as a demo for now. if release.container_id == "hl5g6d5msjcl7hlbyyvcsbhc2u" \ and release.release_year in (2011, 2013) \ and release.issue.isdigit() \ and t['first_page']: t['ia_microfilm_url'] = "https://archive.org/details/sim_bjog_{}-{:02d}/page/n{}".format( release.release_year, int(release.issue) - 1, t['first_page'], ) t['doi_registrar'] = None if extra and t['doi']: for k in ('crossref', 'datacite', 'jalc'): if k in extra: t['doi_registrar'] = k if not 'doi_registrar' in t: t['doi_registrar'] = 'crossref' if t['doi']: t['doi_prefix'] = t['doi'].split('/')[0] if is_longtail_oa: is_oa = True if force_bool: t['is_oa'] = bool(is_oa) t['is_longtail_oa'] = bool(is_longtail_oa) t['in_kbart'] = bool(in_kbart) t['in_ia_sim'] = bool(in_ia_sim) t['in_jstor'] = bool(in_jstor) t['in_web'] = bool(in_web) t['in_dweb'] = bool(in_dweb) t['in_shadows'] = bool(in_shadows) else: t['is_oa'] = is_oa t['is_longtail_oa'] = is_longtail_oa t['in_kbart'] = in_kbart t['in_ia_sim'] = in_ia_sim t['in_jstor'] = in_jstor t['in_web'] = in_web t['in_dweb'] = in_dweb t['in_shadows'] = in_shadows t['in_ia'] = bool(in_ia) t['is_preserved'] = bool(is_preserved or in_ia or in_kbart or in_jstor) if in_ia: t['preservation'] = 'bright' elif in_kbart or in_jstor: t['preservation'] = 'dark_only' elif in_shadows: t['preservation'] = 'shadows_only' else: t['preservation'] = 'none' return t def container_to_elasticsearch(entity, force_bool=True): """ Converts from an entity model/schema to elasticsearch oriented schema. Returns: dict Raises exception on error (never returns None) """ if entity.state in ('redirect', 'deleted'): return dict( ident = entity.ident, state = entity.state, ) elif entity.state != 'active': raise ValueError("Unhandled entity state: {}".format(entity.state)) # First, the easy ones (direct copy) t = dict( ident = entity.ident, state = entity.state, revision = entity.revision, name = entity.name, publisher = entity.publisher, container_type = entity.container_type, issnl = entity.issnl, wikidata_qid = entity.wikidata_qid, ) if not entity.extra: entity.extra = dict() for key in ('country', 'languages', 'mimetypes', 'original_name', 'first_year', 'last_year', 'aliases', 'abbrev', 'region', 'discipline'): if entity.extra.get(key): t[key] = entity.extra[key] t['issns'] = [] if entity.issnl: t['issns'].append(entity.issnl) for key in ('issnp', 'issne'): if entity.extra.get(key): t['issns'].append(entity.extra[key]) in_doaj = None in_road = None is_oa = None is_longtail_oa = None any_kbart = None any_jstor = None any_ia_sim = None extra = entity.extra if extra.get('doaj'): if extra['doaj'].get('as_of'): in_doaj = True if extra.get('road'): if extra['road'].get('as_of'): in_road = True if extra.get('ezb'): if extra['ezb'].get('color') == 'green': is_oa = True if extra.get('szczepanski'): if extra['szczepanski'].get('as_of'): is_oa = True if extra.get('default_license'): if extra['default_license'].startswith('CC-'): is_oa = True t['sherpa_romeo_color'] = None if extra.get('sherpa_romeo'): t['sherpa_romeo_color'] = extra['sherpa_romeo'].get('color') if extra['sherpa_romeo'].get('color') == 'white': is_oa = False if extra.get('kbart'): any_kbart = True if extra['kbart'].get('jstor'): any_jstor = True if extra.get('ia'): if extra['ia'].get('sim'): any_ia_sim = True if extra['ia'].get('longtail_oa'): is_longtail_oa = True t['is_superceded'] = bool(extra.get('superceded')) t['in_doaj'] = bool(in_doaj) t['in_road'] = bool(in_road) t['any_kbart'] = bool(any_kbart) if force_bool: t['is_oa'] = bool(in_doaj or in_road or is_oa) t['is_longtail_oa'] = bool(is_longtail_oa) t['any_jstor'] = bool(any_jstor) t['any_ia_sim'] = bool(any_ia_sim) else: t['is_oa'] = in_doaj or in_road or is_oa t['is_longtail_oa'] = is_longtail_oa t['any_jstor'] = any_jstor t['any_ia_sim'] = any_ia_sim return t def _type_of_edit(edit): if edit.revision == None and edit.redirect_ident == None: return 'delete' elif edit.redirect_ident: # redirect return 'update' elif edit.prev_revision == None and edit.redirect_ident == None and edit.revision: return 'create' else: return 'update' def changelog_to_elasticsearch(entity): """ Note that this importer requires expanded fill info to work. Calling code may need to re-fetch editgroup from API to get the 'editor' field. Some of the old kafka feed content doesn't includes editor in particular. """ editgroup = entity.editgroup t = dict( index=entity.index, editgroup_id=entity.editgroup_id, timestamp=entity.timestamp.isoformat(), editor_id=editgroup.editor_id, username=editgroup.editor.username, is_bot=editgroup.editor.is_bot, is_admin=editgroup.editor.is_admin, ) extra = editgroup.extra or dict() if extra.get('agent'): t['agent'] = extra['agent'] containers = [_type_of_edit(e) for e in editgroup.edits.containers] creators = [_type_of_edit(e) for e in editgroup.edits.creators] files = [_type_of_edit(e) for e in editgroup.edits.files] filesets = [_type_of_edit(e) for e in editgroup.edits.filesets] webcaptures = [_type_of_edit(e) for e in editgroup.edits.webcaptures] releases = [_type_of_edit(e) for e in editgroup.edits.releases] works = [_type_of_edit(e) for e in editgroup.edits.works] t['containers'] = len(containers) t['new_containers'] = len([e for e in containers if e == 'create']) t['creators'] = len(creators) t['new_creators'] = len([e for e in creators if e == 'create']) t['files'] = len(files) t['new_files'] = len([e for e in files if e == 'create']) t['filesets'] = len(filesets) t['new_filesets'] = len([e for e in filesets if e == 'create']) t['webcaptures'] = len(webcaptures) t['new_webcaptures'] = len([e for e in webcaptures if e == 'create']) t['releases'] = len(releases) t['new_releases'] = len([e for e in releases if e == 'create']) t['works'] = len(works) t['new_works'] = len([e for e in works if e == 'create']) all_edits = containers + creators + files + filesets + webcaptures + releases + works t['created'] = len([e for e in all_edits if e == 'create']) t['updated'] = len([e for e in all_edits if e == 'update']) t['deleted'] = len([e for e in all_edits if e == 'delete']) t['total'] = len(all_edits) return t def file_to_elasticsearch(entity): """ Converts from an entity model/schema to elasticsearch oriented schema. Returns: dict Raises exception on error (never returns None) """ if entity.state in ('redirect', 'deleted'): return dict( ident = entity.ident, state = entity.state, ) elif entity.state != 'active': raise ValueError("Unhandled entity state: {}".format(entity.state)) # First, the easy ones (direct copy) t = dict( ident = entity.ident, state = entity.state, revision = entity.revision, release_ids = entity.release_ids, release_count = len(entity.release_ids), mimetype = entity.mimetype, size_bytes = entity.size, sha1 = entity.sha1, sha256 = entity.sha256, md5 = entity.md5, ) parsed_urls = [tldextract.extract(u.url) for u in entity.urls] t['hosts'] = list(set(['.'.join(pu) for pu in parsed_urls])) t['domains'] = list(set([pu.registered_domain for pu in parsed_urls])) t['rels'] = list(set([u.rel for u in entity.urls])) t['in_ia'] = bool('archive.org' in t['domains']) t['in_ia_petabox'] = bool('archive.org' in t['hosts']) # ok, but actually remove archive.org hosts, because they make other # aggregations hard and are a waste of storage t['hosts'] = [h for h in t['hosts'] if h not in ('archive.org', 'web.archive.org')] t['domains'] = [h for h in t['hosts'] if h not in ('archive.org')] return t