From 6ba8bf1b163e70d654968e7157fade23f8f81650 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 4 Feb 2020 17:20:09 -0800 Subject: default to PMC ingest URLs over DOI For cases where there might be both PMC and DOI urls, do the europmc.org PMC ones over DOI option. May want to turn this into a config or command-line option in the future. --- python/fatcat_tools/transforms/ingest.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) (limited to 'python') diff --git a/python/fatcat_tools/transforms/ingest.py b/python/fatcat_tools/transforms/ingest.py index 27a4fb93..22b5154e 100644 --- a/python/fatcat_tools/transforms/ingest.py +++ b/python/fatcat_tools/transforms/ingest.py @@ -23,16 +23,16 @@ def release_ingest_request(release, ingest_request_source='fatcat', ingest_type= url = "https://arxiv.org/pdf/{}.pdf".format(release.ext_ids.arxiv) link_source = "arxiv" link_source_id = release.ext_ids.arxiv - elif release.ext_ids.doi: - url = "https://doi.org/{}".format(release.ext_ids.doi) - link_source = "doi" - link_source_id = release.ext_ids.doi elif release.ext_ids.pmcid: # TODO: how to tell if an author manuscript in PMC vs. published? #url = "https://www.ncbi.nlm.nih.gov/pmc/articles/{}/pdf/".format(release.ext_ids.pmcid) url = "http://europepmc.org/backend/ptpmcrender.fcgi?accid={}&blobtype=pdf".format(release.ext_ids.pmcid) link_source = "pmc" link_source_id = release.ext_ids.pmcid + elif release.ext_ids.doi: + url = "https://doi.org/{}".format(release.ext_ids.doi) + link_source = "doi" + link_source_id = release.ext_ids.doi if not url: return None -- cgit v1.2.3