From 180328d25549ef5517d4870f1069c790cabf1c71 Mon Sep 17 00:00:00 2001
From: Bryan Newbold <bnewbold@robocracy.org>
Date: Mon, 11 Mar 2019 15:31:25 -0700
Subject: basic demo CSL/citeproc transform code

Needs tests
---
 python/fatcat_export.py           |  61 +++++++++++++-
 python/fatcat_tools/__init__.py   |   2 +-
 python/fatcat_tools/transforms.py | 165 ++++++++++++++++++++++++++++++++++++++
 3 files changed, 226 insertions(+), 2 deletions(-)

(limited to 'python')

diff --git a/python/fatcat_export.py b/python/fatcat_export.py
index 33e23202..a9d46142 100755
--- a/python/fatcat_export.py
+++ b/python/fatcat_export.py
@@ -10,12 +10,19 @@ without permission by an third party.
 import sys
 import json
 import argparse
+
+from citeproc import CitationStylesStyle, CitationStylesBibliography
+from citeproc import Citation, CitationItem
+from citeproc import formatter
+from citeproc.source.json import CiteProcJSON
+from citeproc_styles import get_style_filepath
+
 import fatcat_client
 from fatcat_client.rest import ApiException
 from fatcat_client import ReleaseEntity, ContainerEntity, ChangelogEntry
 from fatcat_tools import uuid2fcid, entity_from_json, entity_to_dict, \
     release_to_elasticsearch, container_to_elasticsearch, \
-    changelog_to_elasticsearch, public_api
+    changelog_to_elasticsearch, public_api, release_to_csl
 
 
 def run_export_releases(args):
@@ -52,6 +59,43 @@ def run_transform_changelogs(args):
         args.json_output.write(
             json.dumps(changelog_to_elasticsearch(entity)) + '\n')
 
+def run_citeproc_releases(args):
+    for line in args.json_input:
+        line = line.strip()
+        if not line:
+            continue
+        entity = entity_from_json(line, ReleaseEntity, api_client=args.api.api_client)
+        csl_json = release_to_csl(entity)
+        # XXX:
+        csl_json['id'] = "release:" + (entity.ident or "unknown")
+        if args.style == "csl-json":
+            args.json_output.write(json.dumps(csl_json) + "\n")
+            continue
+        bib_src = CiteProcJSON([csl_json])
+        form = formatter.plain
+        if args.html:
+            form = formatter.html
+        style_path = get_style_filepath(args.style)
+        bib_style = CitationStylesStyle(style_path, validate=False)
+        bib = CitationStylesBibliography(bib_style, bib_src, form)
+        bib.register(Citation([CitationItem(csl_json['id'])]))
+        # XXX:
+        #args.json_output.write(
+        #    json.dumps(release_to_csl(entity)) + '\n')
+        lines = bib.bibliography()[0]
+        if args.style == "bibtex":
+            for l in lines:
+                if l.startswith(" @"):
+                    args.json_output.write("\n@")
+                elif l.startswith(" "):
+                    #print("line: START|{}|END".format(l))
+                    args.json_output.write("\n  " + l)
+                else:
+                    args.json_output.write(l)
+        else:
+            args.json_output.write(''.join(lines) + "\n")
+        print()
+
 def run_export_changelog(args):
     end = args.end
     if end is None:
@@ -109,6 +153,21 @@ def main():
         help="where to send output",
         default=sys.stdout, type=argparse.FileType('w'))
 
+    sub_citeproc_releases = subparsers.add_parser('citeproc-releases')
+    sub_citeproc_releases.set_defaults(func=run_citeproc_releases)
+    sub_citeproc_releases.add_argument('json_input',
+        help="JSON-per-line of release entities",
+        default=sys.stdin, type=argparse.FileType('r'))
+    sub_citeproc_releases.add_argument('json_output',
+        help="where to send output",
+        default=sys.stdout, type=argparse.FileType('w'))
+    sub_citeproc_releases.add_argument('--style',
+        help="citation style to output",
+        default='csl-json')
+    sub_citeproc_releases.add_argument('--html',
+        action='store_true',
+        help="output HTML, not plain text")
+
     sub_changelog = subparsers.add_parser('changelog')
     sub_changelog.set_defaults(func=run_export_changelog)
     sub_changelog.add_argument('--start',
diff --git a/python/fatcat_tools/__init__.py b/python/fatcat_tools/__init__.py
index 64c45062..c72ccd47 100644
--- a/python/fatcat_tools/__init__.py
+++ b/python/fatcat_tools/__init__.py
@@ -3,4 +3,4 @@ from .api_auth import authenticated_api, public_api
 from .fcid import fcid2uuid, uuid2fcid
 from .transforms import entity_to_dict, entity_from_json, \
     release_to_elasticsearch, container_to_elasticsearch, \
-    changelog_to_elasticsearch
+    changelog_to_elasticsearch, release_to_csl
diff --git a/python/fatcat_tools/transforms.py b/python/fatcat_tools/transforms.py
index 0e5afd6a..f49b5ac9 100644
--- a/python/fatcat_tools/transforms.py
+++ b/python/fatcat_tools/transforms.py
@@ -319,6 +319,171 @@ def container_to_elasticsearch(entity, force_bool=True):
     return t
 
 
+def contribs_by_role(contribs, role):
+    ret = [c.copy() for c in contribs if c['role'] == role]
+    [c.pop('role') for c in ret]
+    # XXX:
+    [c.pop('literal') for c in ret]
+    if not ret:
+        return None
+    else:
+        return ret
+
+
+def release_to_csl(entity):
+    """
+    Returns a python dict which can be json.dumps() to get a CSL-JSON (aka,
+    citeproc-JSON, aka Citation Style Language JSON)
+
+    This function will likely become an API method/endpoint
+
+    Follows, but not enforced by: https://github.com/citation-style-language/schema/blob/master/csl-data.json
+    """
+    contribs = []
+    for contrib in (entity.contribs or []):
+        if contrib.creator:
+            # TODO: should we actually be pulling creator metadata? or just
+            # using release-local raw metadata?
+            c = dict(
+                family=contrib.creator.surname,
+                given=contrib.creator.given_name,
+                #dropping-particle
+                #non-dropping-particle
+                #suffix
+                #comma-suffix
+                #static-ordering
+                literal=contrib.raw_name, # or display_name?
+                #parse-names,
+                role=contrib.role,
+            )
+        else:
+            c = dict(
+                # XXX: possible inclusion of full name metadata in release_contrib
+                family=contrib.raw_name.split()[-1],
+                literal=contrib.raw_name,
+                role=contrib.role,
+            )
+        for k in list(c.keys()):
+            if not c[k]:
+                c.pop(k)
+        contribs.append(c)
+    abstract = None
+    if entity.abstracts:
+        abstract = entity.abstracts[0].content
+
+    issued_date = None
+    if entity.release_date:
+        issued_date = {"date-parts": [[
+            entity.release_date.year,
+            entity.release_date.month,
+            entity.release_date.day,
+        ]]}
+    elif entity.release_year:
+        issued_date = {"date-parts": [[entity.release_year]]}
+
+    csl = dict(
+        #id,
+        #categories
+        type=entity.release_type or "article", # XXX: can't be blank
+        language=entity.language,
+        #journalAbbreviation
+        #shortTitle
+        ## see below for all contrib roles
+        #accessed
+        #container
+        #event-date
+        issued=issued_date,
+        #original-date
+        #submitted
+        abstract=abstract,
+        #annote
+        #archive
+        #archive_location
+        #archive-place
+        #authority
+        #call-number
+        #chapter-number
+        #citation-number
+        #citation-label
+        #collection-number
+        #collection-title
+        container_title=entity.container and entity.container.name,
+        #container-title-short
+        #dimensions
+        DOI=entity.doi,
+        #edition
+        #event
+        #event-place
+        #first-reference-note-number
+        #genre
+        ISBN=entity.isbn13,
+        ISSN=entity.container and entity.container.issnl,
+        issue=entity.issue,
+        #jurisdiction
+        #keyword
+        #locator
+        #medium
+        #note
+        #number
+        #number-of-pages
+        #number-of-volumes
+        #original-publisher
+        #original-publisher-place
+        #original-title
+        # XXX: page=entity.pages,
+        page_first=entity.pages.split('-')[0],
+        PMCID=entity.pmcid,
+        PMID=entity.pmid,
+        publisher=(entity.container and entity.container.publisher) or entity.publisher,
+        #publisher-place
+        #references
+        #reviewed-title
+        #scale
+        #section
+        #source
+        #status
+        title=entity.title,
+        #title-short
+        #URL
+        #version
+        volume=entity.volume,
+        #year-suffix
+    )
+    for role in ['author', 'collection-editor', 'composer', 'container-author',
+            'director', 'editor', 'editorial-director', 'interviewer',
+            'illustrator', 'original-author', 'recipient', 'reviewed-author',
+            'translator']:
+        cbr = contribs_by_role(contribs, role)
+        if cbr:
+            csl[role] = cbr
+    # underline-to-dash
+    csl['container-title'] = csl.pop('container_title')
+    csl['page-first'] = csl.pop('page_first')
+    empty_keys = [k for k,v in csl.items() if not v]
+    for k in empty_keys:
+        csl.pop(k)
+    return csl
+
+
+def refs_to_csl(entity):
+    ret = []
+    for ref in entity.refs:
+        if ref.release_id and False:
+            # TODO: fetch full entity from API and convert with release_to_csl
+            raise NotImplementedError
+        else:
+            issued_date = None
+            if ref.year:
+                issued_date = [[ref.year]]
+            csl = dict(
+                title=ref.title,
+                issued=issued_date,
+            )
+        csl['id'] = ref.key or ref.index, # zero- or one-indexed?
+        ret.append(csl)
+    return ret
+
+
 def changelog_to_elasticsearch(entity):
 
     editgroup = entity.editgroup
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