From b03bfc8f3fd84141738f775b273a99850d78e1ff Mon Sep 17 00:00:00 2001
From: Bryan Newbold <bnewbold@robocracy.org>
Date: Mon, 12 Nov 2018 23:18:56 -0800
Subject: refactor python modules

---
 python/fatcat_tools/orcid_importer.py | 73 +++++++++++++++++++++++++++++++++++
 1 file changed, 73 insertions(+)
 create mode 100644 python/fatcat_tools/orcid_importer.py

(limited to 'python/fatcat_tools/orcid_importer.py')

diff --git a/python/fatcat_tools/orcid_importer.py b/python/fatcat_tools/orcid_importer.py
new file mode 100644
index 00000000..e1f5943c
--- /dev/null
+++ b/python/fatcat_tools/orcid_importer.py
@@ -0,0 +1,73 @@
+
+import sys
+import json
+import itertools
+import fatcat_client
+from fatcat.importer_common import FatcatImporter
+
+def value_or_none(e):
+    if type(e) == dict:
+        e = e.get('value')
+    if type(e) == str and len(e) == 0:
+        e = None
+    # TODO: this is probably bogus; patched in desperation; remove?
+    if e:
+        try:
+            e.encode()
+        except UnicodeEncodeError:
+            # Invalid JSON?
+            print("BAD UNICODE")
+            return None
+    return e
+
+class FatcatOrcidImporter(FatcatImporter):
+
+    def parse_orcid_dict(self, obj):
+        """
+        obj is a python dict (parsed from json).
+        returns a CreatorEntity
+        """
+        name = obj['person']['name']
+        if name is None:
+            return None
+        extra = None
+        given = value_or_none(name.get('given-names'))
+        sur = value_or_none(name.get('family-name'))
+        display = value_or_none(name.get('credit-name'))
+        if display is None:
+            # TODO: sorry human beings
+            if given and sur:
+                display = "{} {}".format(given, sur)
+            elif sur:
+                display = sur
+            elif given:
+                display = given
+            else:
+                # must have *some* name
+                return None
+        orcid = obj['orcid-identifier']['path']
+        if not self.is_orcid(orcid):
+            sys.stderr.write("Bad ORCID: {}\n".format(orcid))
+            return None
+        ce = fatcat_client.CreatorEntity(
+            orcid=orcid,
+            given_name=given,
+            surname=sur,
+            display_name=display,
+            extra=extra)
+        return ce
+
+    def create_row(self, row, editgroup=None):
+        obj = json.loads(row)
+        ce = self.parse_orcid_dict(obj)
+        if ce is not None:
+            self.api.create_creator(ce, editgroup=editgroup)
+            self.insert_count = self.insert_count + 1
+
+    def create_batch(self, batch, editgroup=None):
+        """Reads and processes in batches (not API-call-per-line)"""
+        objects = [self.parse_orcid_dict(json.loads(l))
+                   for l in batch if l != None]
+        objects = [o for o in objects if o != None]
+        self.api.create_creator_batch(objects, autoaccept="true", editgroup=editgroup)
+        self.insert_count = self.insert_count + len(objects)
-- 
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