From b80d1354abb6c609e3d3ba97de87959ad623d554 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:28:23 -0800 Subject: schema: DOAJ+dblp ext_ids; bump to v0.3.3 --- CHANGELOG.md | 10 ++++++++++ fatcat-openapi2.yml | 16 +++++++++++++++- 2 files changed, 25 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a8c98c6e..caf816e2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -39,6 +39,16 @@ changes to API. - several other bugfixes to web interface and importer code, not reported here granularly +## [0.3.3] - 2020-11-16 + +Minor additions to the API schema: new external identifiers for release +entities, for `doaj` and `dblp`. Database schema (SQL) not changed. + +### Added + +- two new release external identifiers: `doaj` (article-level) and `dblp` (also + article-level). These are API changes, but backwards compatible. + ## [0.3.2] - 2020-04-08 This release was tagged retro-actively; it was the last commit before upgrading diff --git a/fatcat-openapi2.yml b/fatcat-openapi2.yml index 88b5f5fb..f3a91768 100644 --- a/fatcat-openapi2.yml +++ b/fatcat-openapi2.yml @@ -2,7 +2,7 @@ swagger: "2.0" info: title: fatcat - version: 0.3.1 + version: 0.3.3 description: | Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. @@ -897,6 +897,12 @@ definitions: mag: type: string description: "Microsoft Academic Graph identifier" + doaj: + type: string + description: "DOAJ article-level identifier" + dblp: + type: string + description: "dblp (https://dblp.uni-trier.de/) paper identifier; eg for conference proceedings" release_abstract: type: object properties: @@ -3095,6 +3101,14 @@ paths: in: query type: string required: false + - name: doaj + in: query + type: string + required: false + - name: dblp + in: query + type: string + required: false - name: expand in: query type: string -- cgit v1.2.3 From b4d675b3a4a085d6338d8df5196f4a37dd7c39bc Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:33:10 -0800 Subject: codegen python client library for v0.3.3 --- python_openapi_client/README.md | 4 +- python_openapi_client/codegen_python_client.sh | 2 +- .../fatcat_openapi_client/__init__.py | 4 +- .../fatcat_openapi_client/api/default_api.py | 12 +++- .../fatcat_openapi_client/api_client.py | 4 +- .../fatcat_openapi_client/configuration.py | 6 +- .../models/release_ext_ids.py | 64 ++++++++++++++++++++-- 7 files changed, 80 insertions(+), 16 deletions(-) diff --git a/python_openapi_client/README.md b/python_openapi_client/README.md index fd739e5b..43c9e9c5 100644 --- a/python_openapi_client/README.md +++ b/python_openapi_client/README.md @@ -3,8 +3,8 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities This Python package is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project: -- API version: 0.3.1 -- Package version: 0.3.2 +- API version: 0.3.3 +- Package version: 0.3.3 - Build package: org.openapitools.codegen.languages.PythonClientCodegen For more information, please visit [https://fatcat.wiki](https://fatcat.wiki) diff --git a/python_openapi_client/codegen_python_client.sh b/python_openapi_client/codegen_python_client.sh index 0f70db74..9eb7752c 100755 --- a/python_openapi_client/codegen_python_client.sh +++ b/python_openapi_client/codegen_python_client.sh @@ -20,7 +20,7 @@ docker run \ --input-spec /tmp/swagger/api.yml \ --output /tmp/swagger/ \ --package-name=fatcat_openapi_client \ - -p packageVersion="0.3.2" + -p packageVersion="0.3.3" sudo chown -R `whoami`:`whoami` $OUTPUT mkdir -p fatcat_openapi_client diff --git a/python_openapi_client/fatcat_openapi_client/__init__.py b/python_openapi_client/fatcat_openapi_client/__init__.py index 5d05953b..87e1609a 100644 --- a/python_openapi_client/fatcat_openapi_client/__init__.py +++ b/python_openapi_client/fatcat_openapi_client/__init__.py @@ -7,7 +7,7 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. # noqa: E501 - The version of the OpenAPI document: 0.3.1 + The version of the OpenAPI document: 0.3.3 Contact: webservices@archive.org Generated by: https://openapi-generator.tech """ @@ -15,7 +15,7 @@ from __future__ import absolute_import -__version__ = "0.3.2" +__version__ = "0.3.3" # import apis into sdk package from fatcat_openapi_client.api.default_api import DefaultApi diff --git a/python_openapi_client/fatcat_openapi_client/api/default_api.py b/python_openapi_client/fatcat_openapi_client/api/default_api.py index 43ca78c1..eea7e2a0 100644 --- a/python_openapi_client/fatcat_openapi_client/api/default_api.py +++ b/python_openapi_client/fatcat_openapi_client/api/default_api.py @@ -5,7 +5,7 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. # noqa: E501 - The version of the OpenAPI document: 0.3.1 + The version of the OpenAPI document: 0.3.3 Contact: webservices@archive.org Generated by: https://openapi-generator.tech """ @@ -9855,6 +9855,8 @@ class DefaultApi(object): :param str jstor: :param str ark: :param str mag: + :param str doaj: + :param str dblp: :param str expand: List of sub-entities to expand in response. See `get_release`. :param str hide: List of sub-entities to elide in response. See `get_release`. :param _preload_content: if False, the urllib3.HTTPResponse object will @@ -9891,6 +9893,8 @@ class DefaultApi(object): :param str jstor: :param str ark: :param str mag: + :param str doaj: + :param str dblp: :param str expand: List of sub-entities to expand in response. See `get_release`. :param str hide: List of sub-entities to elide in response. See `get_release`. :param _return_http_data_only: response data without head status code @@ -9909,7 +9913,7 @@ class DefaultApi(object): local_var_params = locals() - all_params = ['doi', 'wikidata_qid', 'isbn13', 'pmid', 'pmcid', 'core', 'arxiv', 'jstor', 'ark', 'mag', 'expand', 'hide'] # noqa: E501 + all_params = ['doi', 'wikidata_qid', 'isbn13', 'pmid', 'pmcid', 'core', 'arxiv', 'jstor', 'ark', 'mag', 'doaj', 'dblp', 'expand', 'hide'] # noqa: E501 all_params.append('async_req') all_params.append('_return_http_data_only') all_params.append('_preload_content') @@ -9949,6 +9953,10 @@ class DefaultApi(object): query_params.append(('ark', local_var_params['ark'])) # noqa: E501 if 'mag' in local_var_params: query_params.append(('mag', local_var_params['mag'])) # noqa: E501 + if 'doaj' in local_var_params: + query_params.append(('doaj', local_var_params['doaj'])) # noqa: E501 + if 'dblp' in local_var_params: + query_params.append(('dblp', local_var_params['dblp'])) # noqa: E501 if 'expand' in local_var_params: query_params.append(('expand', local_var_params['expand'])) # noqa: E501 if 'hide' in local_var_params: diff --git a/python_openapi_client/fatcat_openapi_client/api_client.py b/python_openapi_client/fatcat_openapi_client/api_client.py index d156560a..4aca1010 100644 --- a/python_openapi_client/fatcat_openapi_client/api_client.py +++ b/python_openapi_client/fatcat_openapi_client/api_client.py @@ -4,7 +4,7 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. # noqa: E501 - The version of the OpenAPI document: 0.3.1 + The version of the OpenAPI document: 0.3.3 Contact: webservices@archive.org Generated by: https://openapi-generator.tech """ @@ -77,7 +77,7 @@ class ApiClient(object): self.default_headers[header_name] = header_value self.cookie = cookie # Set default User-Agent. - self.user_agent = 'OpenAPI-Generator/0.3.2/python' + self.user_agent = 'OpenAPI-Generator/0.3.3/python' def __del__(self): if self._pool: diff --git a/python_openapi_client/fatcat_openapi_client/configuration.py b/python_openapi_client/fatcat_openapi_client/configuration.py index cf75cc8a..e970b674 100644 --- a/python_openapi_client/fatcat_openapi_client/configuration.py +++ b/python_openapi_client/fatcat_openapi_client/configuration.py @@ -5,7 +5,7 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. # noqa: E501 - The version of the OpenAPI document: 0.3.1 + The version of the OpenAPI document: 0.3.3 Contact: webservices@archive.org Generated by: https://openapi-generator.tech """ @@ -267,8 +267,8 @@ class Configuration(object): return "Python SDK Debug Report:\n"\ "OS: {env}\n"\ "Python Version: {pyversion}\n"\ - "Version of the API: 0.3.1\n"\ - "SDK Package Version: 0.3.2".\ + "Version of the API: 0.3.3\n"\ + "SDK Package Version: 0.3.3".\ format(env=sys.platform, pyversion=sys.version) def get_host_settings(self): diff --git a/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py b/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py index c986e1fe..3ac0f402 100644 --- a/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py +++ b/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py @@ -5,7 +5,7 @@ Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. # noqa: E501 - The version of the OpenAPI document: 0.3.1 + The version of the OpenAPI document: 0.3.3 Contact: webservices@archive.org Generated by: https://openapi-generator.tech """ @@ -41,7 +41,9 @@ class ReleaseExtIds(object): 'arxiv': 'str', 'jstor': 'str', 'ark': 'str', - 'mag': 'str' + 'mag': 'str', + 'doaj': 'str', + 'dblp': 'str' } attribute_map = { @@ -54,10 +56,12 @@ class ReleaseExtIds(object): 'arxiv': 'arxiv', 'jstor': 'jstor', 'ark': 'ark', - 'mag': 'mag' + 'mag': 'mag', + 'doaj': 'doaj', + 'dblp': 'dblp' } - def __init__(self, doi=None, wikidata_qid=None, isbn13=None, pmid=None, pmcid=None, core=None, arxiv=None, jstor=None, ark=None, mag=None): # noqa: E501 + def __init__(self, doi=None, wikidata_qid=None, isbn13=None, pmid=None, pmcid=None, core=None, arxiv=None, jstor=None, ark=None, mag=None, doaj=None, dblp=None): # noqa: E501 """ReleaseExtIds - a model defined in OpenAPI""" # noqa: E501 self._doi = None @@ -70,6 +74,8 @@ class ReleaseExtIds(object): self._jstor = None self._ark = None self._mag = None + self._doaj = None + self._dblp = None self.discriminator = None if doi is not None: @@ -92,6 +98,10 @@ class ReleaseExtIds(object): self.ark = ark if mag is not None: self.mag = mag + if doaj is not None: + self.doaj = doaj + if dblp is not None: + self.dblp = dblp @property def doi(self): @@ -323,6 +333,52 @@ class ReleaseExtIds(object): self._mag = mag + @property + def doaj(self): + """Gets the doaj of this ReleaseExtIds. # noqa: E501 + + DOAJ article-level identifier # noqa: E501 + + :return: The doaj of this ReleaseExtIds. # noqa: E501 + :rtype: str + """ + return self._doaj + + @doaj.setter + def doaj(self, doaj): + """Sets the doaj of this ReleaseExtIds. + + DOAJ article-level identifier # noqa: E501 + + :param doaj: The doaj of this ReleaseExtIds. # noqa: E501 + :type: str + """ + + self._doaj = doaj + + @property + def dblp(self): + """Gets the dblp of this ReleaseExtIds. # noqa: E501 + + dblp (https://dblp.uni-trier.de/) paper identifier; eg for conference proceedings # noqa: E501 + + :return: The dblp of this ReleaseExtIds. # noqa: E501 + :rtype: str + """ + return self._dblp + + @dblp.setter + def dblp(self, dblp): + """Sets the dblp of this ReleaseExtIds. + + dblp (https://dblp.uni-trier.de/) paper identifier; eg for conference proceedings # noqa: E501 + + :param dblp: The dblp of this ReleaseExtIds. # noqa: E501 + :type: str + """ + + self._dblp = dblp + def to_dict(self): """Returns the model properties as a dict""" result = {} -- cgit v1.2.3 From 89016d99a20269c1a576bd4c7673f83af55e8218 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:46:20 -0800 Subject: codegen rust crate for v0.3.3 --- rust/fatcat-openapi/README.md | 8 +- rust/fatcat-openapi/examples/client.rs | 5 +- rust/fatcat-openapi/examples/server.rs | 11 +- rust/fatcat-openapi/examples/server_lib/server.rs | 208 ++++++++++----------- rust/fatcat-openapi/src/client.rs | 215 +++++++++++----------- rust/fatcat-openapi/src/lib.rs | 8 +- rust/fatcat-openapi/src/models.rs | 12 ++ rust/fatcat-openapi/src/server.rs | 4 + 8 files changed, 244 insertions(+), 227 deletions(-) diff --git a/rust/fatcat-openapi/README.md b/rust/fatcat-openapi/README.md index 1e02e033..27137793 100644 --- a/rust/fatcat-openapi/README.md +++ b/rust/fatcat-openapi/README.md @@ -1,6 +1,6 @@ # Rust API for fatcat -Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. These API reference documents, along with client software libraries, are generated automatically from an OpenAPI 2.0 (\"Swagger\") definition file. ## Introduction A higher-level introduction to the API, as well as a description of the fatcat data model, are available in [\"The Fatcat Guide\"](https://guide.fatcat.wiki/). The guide also includes a [Cookbook](https://guide.fatcat.wiki/cookbook.html) section demonstrating end-to-end tasks like creating entities as part of editgroups, or safely merging duplicate entities. ### Expectations and Best Practices A test/staging QA API instance of fatcat is available at . The database backing this instance is separate from the production interface, and is periodically rebuilt from snapshots of the full production database, meaning that edits on the QA server will *NOT* persist, and that semantics like the changelog index monotonically increasing *MAY* be broken. Developers are expexcted to test their scripts and tools against the QA instance before running against production. Fatcat is made available as a gratis (no cost) and libre (freedom preserving) service to the public, with limited funding and resources. We welcome new and unforseen uses and contributions, but may need to impose restrictions (like rate-limits) to keep the service functional for other users, and in extreme cases reserve the option to block accounts and IP ranges if necessary to keep the service operational. The Internet Archive owns and operates it's own server equipment and data centers, and operations are optimized for low-cost, not high-availability. Users and partners should expect some downtime on the fatcat API, on the order of hours a month. Periodic metadata exports are available for batch processing, and database snapshots can be used to create locally-hosted mirrors of the service for more intensive and reliable querying. ### Other Nitty Gritties Cross-origin requests are allowed for the API service, to enable third parties to bulid in-browser applications. A metadata search service is available at (and ). The API is currently the raw elasticsearch API, with only GET (read) requests allowed. This public service is experimental and may be removed or limited in the future. ## Authentication The API allows basic read-only \"GET\" HTTP requests with no authentication. Proposing changes to the metadata, or other mutating requests (\"PUT\", \"POST\", \"DELETE\") all require authentication, and some operations require additional account permissions. End-user account creation and login happens through the web interface. From a logged-in editor profile page, you can generate a API token. Tokens are \"macaroons\", similar to JWT tokens, and are used for all API authentication. The web interface includes macaroons in browser cookies and passes them through to the API to authenticate editor actions. +Fatcat is a scalable, versioned, API-oriented catalog of bibliographic entities and file metadata. These API reference documents, along with client software libraries, are generated automatically from an OpenAPI 2.0 (\"Swagger\") definition file. ## Introduction A higher-level introduction to the API, as well as a description of the fatcat data model, are available in [\"The Fatcat Guide\"](https://guide.fatcat.wiki/). The guide also includes a [Cookbook](https://guide.fatcat.wiki/cookbook.html) section demonstrating end-to-end tasks like creating entities as part of editgroups, or safely merging duplicate entities. ### Expectations and Best Practices A test/staging QA API instance of fatcat is available at . The database backing this instance is separate from the production interface, and is periodically rebuilt from snapshots of the full production database, meaning that edits on the QA server will *NOT* persist, and that semantics like the changelog index monotonically increasing *MAY* be broken. Developers are expexcted to test their scripts and tools against the QA instance before running against production. Fatcat is made available as a gratis (no cost) and libre (freedom preserving) service to the public, with limited funding and resources. We welcome new and unforseen uses and contributions, but may need to impose restrictions (like rate-limits) to keep the service functional for other users, and in extreme cases reserve the option to block accounts and IP ranges if necessary to keep the service operational. The Internet Archive owns and operates it's own server equipment and data centers, and operations are optimized for low-cost, not high-availability. Users and partners should expect some downtime on the fatcat API, on the order of hours a month. Periodic metadata exports are available for batch processing, and database snapshots can be used to create locally-hosted mirrors of the service for more intensive and reliable querying. ### Other Nitty Gritties Cross-origin requests are allowed for the API service, to enable third parties to build in-browser applications. A metadata search service is available at (and ). The API is currently the raw elasticsearch API, with only GET (read) requests allowed. This public service is experimental and may be removed or limited in the future. ## Authentication The API allows basic read-only \"GET\" HTTP requests with no authentication. Proposing changes to the metadata, or other mutating requests (\"PUT\", \"POST\", \"DELETE\") all require authentication, and some operations require additional account permissions. End-user account creation and login happens through the web interface. From a logged-in editor profile page, you can generate a API token. Tokens are \"macaroons\", similar to JWT tokens, and are used for all API authentication. The web interface includes macaroons in browser cookies and passes them through to the API to authenticate editor actions. ## Overview This client/server was generated by the [swagger-codegen] @@ -12,8 +12,8 @@ To see how to make this your own, look here: [README](https://github.com/swagger-api/swagger-codegen/blob/master/README.md) -- API version: 0.3.1 -- Build date: 2019-09-19T00:21:33.977Z +- API version: 0.3.3 +- Build date: 2020-11-17T23:34:45.205Z For more information, please visit [https://fatcat.wiki](https://fatcat.wiki) This autogenerated project defines an API crate `fatcat` which contains: @@ -171,7 +171,7 @@ The server example is designed to form the basis for implementing your own serve * Set up a new Rust project, e.g., with `cargo init --bin`. * Insert `fatcat` into the `members` array under [workspace] in the root `Cargo.toml`, e.g., `members = [ "fatcat" ]`. -* Add `fatcat = {version = "0.3.1", path = "fatcat"}` under `[dependencies]` in the root `Cargo.toml`. +* Add `fatcat = {version = "0.3.3", path = "fatcat"}` under `[dependencies]` in the root `Cargo.toml`. * Copy the `[dependencies]` and `[dev-dependencies]` from `fatcat/Cargo.toml` into the root `Cargo.toml`'s `[dependencies]` section. * Copy all of the `[dev-dependencies]`, but only the `[dependencies]` that are required by the example server. These should be clearly indicated by comments. * Remove `"optional = true"` from each of these lines if present. diff --git a/rust/fatcat-openapi/examples/client.rs b/rust/fatcat-openapi/examples/client.rs index 5ed6122a..3fb833bd 100644 --- a/rust/fatcat-openapi/examples/client.rs +++ b/rust/fatcat-openapi/examples/client.rs @@ -1,6 +1,7 @@ #![allow(missing_docs, unused_variables, trivial_casts)] -use fatcat_openapi; +extern crate clap; +extern crate fatcat_openapi; #[allow(unused_extern_crates)] extern crate futures; #[allow(unused_extern_crates)] @@ -557,6 +558,8 @@ fn main() { Some("jstor_example".to_string()), Some("ark_example".to_string()), Some("mag_example".to_string()), + Some("doaj_example".to_string()), + Some("dblp_example".to_string()), Some("expand_example".to_string()), Some("hide_example".to_string()), ) diff --git a/rust/fatcat-openapi/examples/server.rs b/rust/fatcat-openapi/examples/server.rs index a033413b..1a4fd06d 100644 --- a/rust/fatcat-openapi/examples/server.rs +++ b/rust/fatcat-openapi/examples/server.rs @@ -4,13 +4,17 @@ // Imports required by this file. // extern crate ; -use fatcat_openapi; +extern crate clap; +extern crate fatcat_openapi; +extern crate hyper_openssl; +extern crate iron; +extern crate swagger; // Imports required by server library. // extern crate fatcat_openapi; // extern crate swagger; -use chrono; -use futures; +extern crate chrono; +extern crate futures; #[macro_use] extern crate error_chain; @@ -20,6 +24,7 @@ use hyper_openssl::openssl::ssl::{SslAcceptorBuilder, SslMethod}; use hyper_openssl::openssl::x509::X509_FILETYPE_PEM; use hyper_openssl::OpensslServer; use iron::{Chain, Iron}; +use swagger::auth::AllowAllMiddleware; mod server_lib; diff --git a/rust/fatcat-openapi/examples/server_lib/server.rs b/rust/fatcat-openapi/examples/server_lib/server.rs index 838bd63d..6b681c7e 100644 --- a/rust/fatcat-openapi/examples/server_lib/server.rs +++ b/rust/fatcat-openapi/examples/server_lib/server.rs @@ -31,19 +31,19 @@ use fatcat_openapi::{ pub struct Server; impl Api for Server { - fn auth_check(&self, role: Option, context: &Context) -> Box + Send> { + fn auth_check(&self, role: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!("auth_check({:?}) - X-Span-ID: {:?}", role, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn auth_oidc(&self, oidc_params: models::AuthOidc, context: &Context) -> Box + Send> { + fn auth_oidc(&self, oidc_params: models::AuthOidc, context: &Context) -> Box + Send> { let context = context.clone(); println!("auth_oidc({:?}) - X-Span-ID: {:?}", oidc_params, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn create_auth_token(&self, editor_id: String, duration_seconds: Option, context: &Context) -> Box + Send> { + fn create_auth_token(&self, editor_id: String, duration_seconds: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_auth_token(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -54,19 +54,19 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_changelog(&self, limit: Option, context: &Context) -> Box + Send> { + fn get_changelog(&self, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_changelog({:?}) - X-Span-ID: {:?}", limit, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_changelog_entry(&self, index: i64, context: &Context) -> Box + Send> { + fn get_changelog_entry(&self, index: i64, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_changelog_entry({}) - X-Span-ID: {:?}", index, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn create_container(&self, editgroup_id: String, entity: models::ContainerEntity, context: &Context) -> Box + Send> { + fn create_container(&self, editgroup_id: String, entity: models::ContainerEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_container(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -77,7 +77,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_container_auto_batch(&self, auto_batch: models::ContainerAutoBatch, context: &Context) -> Box + Send> { + fn create_container_auto_batch(&self, auto_batch: models::ContainerAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_container_auto_batch({:?}) - X-Span-ID: {:?}", @@ -87,7 +87,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_container(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_container(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_container(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -98,7 +98,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_container_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_container_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_container_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -109,7 +109,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_container(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_container(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_container(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -121,13 +121,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_container_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_container_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_container_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_container_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_container_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_container_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -138,13 +138,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_container_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_container_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_container_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_container_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_container_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_container_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -163,7 +163,7 @@ impl Api for Server { expand: Option, hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "lookup_container({:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -176,7 +176,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_container(&self, editgroup_id: String, ident: String, entity: models::ContainerEntity, context: &Context) -> Box + Send> { + fn update_container(&self, editgroup_id: String, ident: String, entity: models::ContainerEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_container(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -188,7 +188,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_creator(&self, editgroup_id: String, entity: models::CreatorEntity, context: &Context) -> Box + Send> { + fn create_creator(&self, editgroup_id: String, entity: models::CreatorEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_creator(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -199,7 +199,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_creator_auto_batch(&self, auto_batch: models::CreatorAutoBatch, context: &Context) -> Box + Send> { + fn create_creator_auto_batch(&self, auto_batch: models::CreatorAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_creator_auto_batch({:?}) - X-Span-ID: {:?}", @@ -209,7 +209,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_creator(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_creator(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_creator(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -220,7 +220,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_creator_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_creator_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_creator_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -231,7 +231,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_creator(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_creator(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_creator(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -243,13 +243,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_creator_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_creator_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_creator_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_creator_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_creator_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_creator_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -260,13 +260,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_creator_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_creator_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_creator_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_creator_releases(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { + fn get_creator_releases(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_creator_releases(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -277,7 +277,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_creator_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_creator_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_creator_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -296,7 +296,7 @@ impl Api for Server { expand: Option, hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "lookup_creator({:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -309,7 +309,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_creator(&self, editgroup_id: String, ident: String, entity: models::CreatorEntity, context: &Context) -> Box + Send> { + fn update_creator(&self, editgroup_id: String, ident: String, entity: models::CreatorEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_creator(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -321,13 +321,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn accept_editgroup(&self, editgroup_id: String, context: &Context) -> Box + Send> { + fn accept_editgroup(&self, editgroup_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("accept_editgroup(\"{}\") - X-Span-ID: {:?}", editgroup_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn create_editgroup(&self, editgroup: models::Editgroup, context: &Context) -> Box + Send> { + fn create_editgroup(&self, editgroup: models::Editgroup, context: &Context) -> Box + Send> { let context = context.clone(); println!("create_editgroup({:?}) - X-Span-ID: {:?}", editgroup, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) @@ -338,7 +338,7 @@ impl Api for Server { editgroup_id: String, annotation: models::EditgroupAnnotation, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "create_editgroup_annotation(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -349,13 +349,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_editgroup(&self, editgroup_id: String, context: &Context) -> Box + Send> { + fn get_editgroup(&self, editgroup_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_editgroup(\"{}\") - X-Span-ID: {:?}", editgroup_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_editgroup_annotations(&self, editgroup_id: String, expand: Option, context: &Context) -> Box + Send> { + fn get_editgroup_annotations(&self, editgroup_id: String, expand: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_editgroup_annotations(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -373,7 +373,7 @@ impl Api for Server { before: Option>, since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "get_editgroups_reviewable({:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -386,13 +386,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_editgroup( - &self, - editgroup_id: String, - editgroup: models::Editgroup, - submit: Option, - context: &Context, - ) -> Box + Send> { + fn update_editgroup(&self, editgroup_id: String, editgroup: models::Editgroup, submit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_editgroup(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -404,7 +398,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_editor(&self, editor_id: String, context: &Context) -> Box + Send> { + fn get_editor(&self, editor_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_editor(\"{}\") - X-Span-ID: {:?}", editor_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) @@ -417,7 +411,7 @@ impl Api for Server { before: Option>, since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "get_editor_annotations(\"{}\", {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -437,7 +431,7 @@ impl Api for Server { before: Option>, since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "get_editor_editgroups(\"{}\", {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -450,7 +444,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_editor(&self, editor_id: String, editor: models::Editor, context: &Context) -> Box + Send> { + fn update_editor(&self, editor_id: String, editor: models::Editor, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_editor(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -461,7 +455,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_file(&self, editgroup_id: String, entity: models::FileEntity, context: &Context) -> Box + Send> { + fn create_file(&self, editgroup_id: String, entity: models::FileEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_file(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -472,7 +466,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_file_auto_batch(&self, auto_batch: models::FileAutoBatch, context: &Context) -> Box + Send> { + fn create_file_auto_batch(&self, auto_batch: models::FileAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_file_auto_batch({:?}) - X-Span-ID: {:?}", @@ -482,7 +476,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_file(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_file(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_file(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -493,7 +487,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_file_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_file_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_file_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -504,7 +498,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_file(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_file(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_file(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -516,13 +510,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_file_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_file_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_file_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_file_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_file_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_file_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -533,13 +527,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_file_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_file_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_file_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_file_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_file_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_file_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -559,7 +553,7 @@ impl Api for Server { expand: Option, hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( "lookup_file({:?}, {:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", @@ -573,7 +567,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_file(&self, editgroup_id: String, ident: String, entity: models::FileEntity, context: &Context) -> Box + Send> { + fn update_file(&self, editgroup_id: String, ident: String, entity: models::FileEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_file(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -585,7 +579,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_fileset(&self, editgroup_id: String, entity: models::FilesetEntity, context: &Context) -> Box + Send> { + fn create_fileset(&self, editgroup_id: String, entity: models::FilesetEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_fileset(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -596,7 +590,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_fileset_auto_batch(&self, auto_batch: models::FilesetAutoBatch, context: &Context) -> Box + Send> { + fn create_fileset_auto_batch(&self, auto_batch: models::FilesetAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_fileset_auto_batch({:?}) - X-Span-ID: {:?}", @@ -606,7 +600,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_fileset(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_fileset(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_fileset(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -617,7 +611,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_fileset_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_fileset_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_fileset_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -628,7 +622,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_fileset(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_fileset(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_fileset(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -640,13 +634,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_fileset_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_fileset_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_fileset_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_fileset_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_fileset_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_fileset_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -657,13 +651,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_fileset_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_fileset_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_fileset_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_fileset_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_fileset_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_fileset_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -675,7 +669,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_fileset(&self, editgroup_id: String, ident: String, entity: models::FilesetEntity, context: &Context) -> Box + Send> { + fn update_fileset(&self, editgroup_id: String, ident: String, entity: models::FilesetEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_fileset(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -687,7 +681,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_release(&self, editgroup_id: String, entity: models::ReleaseEntity, context: &Context) -> Box + Send> { + fn create_release(&self, editgroup_id: String, entity: models::ReleaseEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_release(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -698,7 +692,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_release_auto_batch(&self, auto_batch: models::ReleaseAutoBatch, context: &Context) -> Box + Send> { + fn create_release_auto_batch(&self, auto_batch: models::ReleaseAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_release_auto_batch({:?}) - X-Span-ID: {:?}", @@ -708,7 +702,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_release(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_release(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_release(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -719,7 +713,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_release_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_release_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_release_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -730,7 +724,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_release(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -742,13 +736,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_release_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_release_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_release_files(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { + fn get_release_files(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release_files(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -759,7 +753,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release_filesets(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { + fn get_release_filesets(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release_filesets(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -770,7 +764,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_release_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -781,13 +775,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_release_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_release_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_release_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_release_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -799,7 +793,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_release_webcaptures(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { + fn get_release_webcaptures(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_release_webcaptures(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -822,13 +816,15 @@ impl Api for Server { jstor: Option, ark: Option, mag: Option, + doaj: Option, + dblp: Option, expand: Option, hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let context = context.clone(); println!( - "lookup_release({:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", + "lookup_release({:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", doi, wikidata_qid, isbn13, @@ -839,6 +835,8 @@ impl Api for Server { jstor, ark, mag, + doaj, + dblp, expand, hide, context.x_span_id.unwrap_or(String::from("")).clone() @@ -846,7 +844,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_release(&self, editgroup_id: String, ident: String, entity: models::ReleaseEntity, context: &Context) -> Box + Send> { + fn update_release(&self, editgroup_id: String, ident: String, entity: models::ReleaseEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_release(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -858,7 +856,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_webcapture(&self, editgroup_id: String, entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { + fn create_webcapture(&self, editgroup_id: String, entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_webcapture(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -869,7 +867,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_webcapture_auto_batch(&self, auto_batch: models::WebcaptureAutoBatch, context: &Context) -> Box + Send> { + fn create_webcapture_auto_batch(&self, auto_batch: models::WebcaptureAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_webcapture_auto_batch({:?}) - X-Span-ID: {:?}", @@ -879,7 +877,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_webcapture(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_webcapture(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_webcapture(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -890,7 +888,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_webcapture_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_webcapture_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_webcapture_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -901,7 +899,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_webcapture(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_webcapture(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_webcapture(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -913,13 +911,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_webcapture_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_webcapture_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_webcapture_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_webcapture_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_webcapture_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_webcapture_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -930,19 +928,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_webcapture_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_webcapture_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_webcapture_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_webcapture_revision( - &self, - rev_id: String, - expand: Option, - hide: Option, - context: &Context, - ) -> Box + Send> { + fn get_webcapture_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_webcapture_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -954,7 +946,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_webcapture(&self, editgroup_id: String, ident: String, entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { + fn update_webcapture(&self, editgroup_id: String, ident: String, entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_webcapture(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", @@ -966,7 +958,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_work(&self, editgroup_id: String, entity: models::WorkEntity, context: &Context) -> Box + Send> { + fn create_work(&self, editgroup_id: String, entity: models::WorkEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_work(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -977,7 +969,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn create_work_auto_batch(&self, auto_batch: models::WorkAutoBatch, context: &Context) -> Box + Send> { + fn create_work_auto_batch(&self, auto_batch: models::WorkAutoBatch, context: &Context) -> Box + Send> { let context = context.clone(); println!( "create_work_auto_batch({:?}) - X-Span-ID: {:?}", @@ -987,7 +979,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_work(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { + fn delete_work(&self, editgroup_id: String, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_work(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -998,7 +990,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn delete_work_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { + fn delete_work_edit(&self, editgroup_id: String, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!( "delete_work_edit(\"{}\", \"{}\") - X-Span-ID: {:?}", @@ -1009,7 +1001,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_work(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_work(&self, ident: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_work(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -1021,13 +1013,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_work_edit(&self, edit_id: String, context: &Context) -> Box + Send> { + fn get_work_edit(&self, edit_id: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_work_edit(\"{}\") - X-Span-ID: {:?}", edit_id, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_work_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { + fn get_work_history(&self, ident: String, limit: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_work_history(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -1038,13 +1030,13 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_work_redirects(&self, ident: String, context: &Context) -> Box + Send> { + fn get_work_redirects(&self, ident: String, context: &Context) -> Box + Send> { let context = context.clone(); println!("get_work_redirects(\"{}\") - X-Span-ID: {:?}", ident, context.x_span_id.unwrap_or(String::from("")).clone()); Box::new(futures::failed("Generic failure".into())) } - fn get_work_releases(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { + fn get_work_releases(&self, ident: String, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_work_releases(\"{}\", {:?}) - X-Span-ID: {:?}", @@ -1055,7 +1047,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn get_work_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { + fn get_work_revision(&self, rev_id: String, expand: Option, hide: Option, context: &Context) -> Box + Send> { let context = context.clone(); println!( "get_work_revision(\"{}\", {:?}, {:?}) - X-Span-ID: {:?}", @@ -1067,7 +1059,7 @@ impl Api for Server { Box::new(futures::failed("Generic failure".into())) } - fn update_work(&self, editgroup_id: String, ident: String, entity: models::WorkEntity, context: &Context) -> Box + Send> { + fn update_work(&self, editgroup_id: String, ident: String, entity: models::WorkEntity, context: &Context) -> Box + Send> { let context = context.clone(); println!( "update_work(\"{}\", \"{}\", {:?}) - X-Span-ID: {:?}", diff --git a/rust/fatcat-openapi/src/client.rs b/rust/fatcat-openapi/src/client.rs index e1e8130e..45591b9a 100644 --- a/rust/fatcat-openapi/src/client.rs +++ b/rust/fatcat-openapi/src/client.rs @@ -73,7 +73,7 @@ fn into_base_path(input: T, correct_scheme: Option<&'static str>) -> #[derive(Clone)] pub struct Client { base_path: String, - hyper_client: Arc hyper::client::Client + Sync + Send>, + hyper_client: Arc hyper::client::Client + Sync + Send>, } impl fmt::Debug for Client { @@ -161,7 +161,7 @@ impl Client { /// The reason for this function's existence is to support legacy test code, which did mocking at the hyper layer. /// This is not a recommended way to write new tests. If other reasons are found for using this function, they /// should be mentioned here. - pub fn try_new_with_hyper_client(base_path: T, hyper_client: Arc hyper::client::Client + Sync + Send>) -> Result + pub fn try_new_with_hyper_client(base_path: T, hyper_client: Arc hyper::client::Client + Sync + Send>) -> Result where T: IntoUrl, { @@ -173,7 +173,7 @@ impl Client { } impl Api for Client { - fn auth_check(&self, param_role: Option, context: &Context) -> Box + Send> { + fn auth_check(&self, param_role: Option, context: &Context) -> Box + Send> { // Query parameters let query_role = param_role.map_or_else(String::new, |query| format!("role={role}&", role = query.to_string())); @@ -251,7 +251,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn auth_oidc(&self, param_oidc_params: models::AuthOidc, context: &Context) -> Box + Send> { + fn auth_oidc(&self, param_oidc_params: models::AuthOidc, context: &Context) -> Box + Send> { let url = format!("{}/v0/auth/oidc", self.base_path); let body = serde_json::to_string(¶m_oidc_params).expect("impossible to fail to serialize"); @@ -345,7 +345,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_auth_token(&self, param_editor_id: String, param_duration_seconds: Option, context: &Context) -> Box + Send> { + fn create_auth_token(&self, param_editor_id: String, param_duration_seconds: Option, context: &Context) -> Box + Send> { // Query parameters let query_duration_seconds = param_duration_seconds.map_or_else(String::new, |query| format!("duration_seconds={duration_seconds}&", duration_seconds = query.to_string())); @@ -428,7 +428,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_changelog(&self, param_limit: Option, context: &Context) -> Box + Send> { + fn get_changelog(&self, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -484,7 +484,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_changelog_entry(&self, param_index: i64, context: &Context) -> Box + Send> { + fn get_changelog_entry(&self, param_index: i64, context: &Context) -> Box + Send> { let url = format!( "{}/v0/changelog/{index}", self.base_path, @@ -548,7 +548,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_container(&self, param_editgroup_id: String, param_entity: models::ContainerEntity, context: &Context) -> Box + Send> { + fn create_container(&self, param_editgroup_id: String, param_entity: models::ContainerEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/container", self.base_path, @@ -639,7 +639,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_container_auto_batch(&self, param_auto_batch: models::ContainerAutoBatch, context: &Context) -> Box + Send> { + fn create_container_auto_batch(&self, param_auto_batch: models::ContainerAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/container/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -726,7 +726,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_container(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_container(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/container/{ident}", self.base_path, @@ -813,7 +813,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_container_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_container_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/container/edit/{edit_id}", self.base_path, @@ -900,7 +900,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_container(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_container(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -970,7 +970,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_container_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_container_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/container/edit/{edit_id}", self.base_path, @@ -1034,7 +1034,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_container_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_container_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -1102,7 +1102,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_container_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_container_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/container/{ident}/redirects", self.base_path, @@ -1172,7 +1172,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -1249,7 +1249,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_issnl = param_issnl.map_or_else(String::new, |query| format!("issnl={issnl}&", issnl = query.to_string())); let query_wikidata_qid = param_wikidata_qid.map_or_else(String::new, |query| format!("wikidata_qid={wikidata_qid}&", wikidata_qid = query.to_string())); @@ -1328,7 +1328,7 @@ impl Api for Client { param_ident: String, param_entity: models::ContainerEntity, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/container/{ident}", self.base_path, @@ -1420,7 +1420,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_creator(&self, param_editgroup_id: String, param_entity: models::CreatorEntity, context: &Context) -> Box + Send> { + fn create_creator(&self, param_editgroup_id: String, param_entity: models::CreatorEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/creator", self.base_path, @@ -1511,7 +1511,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_creator_auto_batch(&self, param_auto_batch: models::CreatorAutoBatch, context: &Context) -> Box + Send> { + fn create_creator_auto_batch(&self, param_auto_batch: models::CreatorAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/creator/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -1598,7 +1598,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_creator(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_creator(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/creator/{ident}", self.base_path, @@ -1685,7 +1685,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_creator_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_creator_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/creator/edit/{edit_id}", self.base_path, @@ -1772,7 +1772,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_creator(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_creator(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -1842,7 +1842,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_creator_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_creator_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/creator/edit/{edit_id}", self.base_path, @@ -1906,7 +1906,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_creator_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_creator_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -1974,7 +1974,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_creator_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_creator_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/creator/{ident}/redirects", self.base_path, @@ -2038,7 +2038,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_creator_releases(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { + fn get_creator_releases(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -2112,7 +2112,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -2189,7 +2189,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_orcid = param_orcid.map_or_else(String::new, |query| format!("orcid={orcid}&", orcid = query.to_string())); let query_wikidata_qid = param_wikidata_qid.map_or_else(String::new, |query| format!("wikidata_qid={wikidata_qid}&", wikidata_qid = query.to_string())); @@ -2268,7 +2268,7 @@ impl Api for Client { param_ident: String, param_entity: models::CreatorEntity, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/creator/{ident}", self.base_path, @@ -2360,7 +2360,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn accept_editgroup(&self, param_editgroup_id: String, context: &Context) -> Box + Send> { + fn accept_editgroup(&self, param_editgroup_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/accept", self.base_path, @@ -2453,7 +2453,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_editgroup(&self, param_editgroup: models::Editgroup, context: &Context) -> Box + Send> { + fn create_editgroup(&self, param_editgroup: models::Editgroup, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup", self.base_path); let body = serde_json::to_string(¶m_editgroup).expect("impossible to fail to serialize"); @@ -2545,7 +2545,7 @@ impl Api for Client { param_editgroup_id: String, param_annotation: models::EditgroupAnnotation, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/annotation", self.base_path, @@ -2636,7 +2636,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_editgroup(&self, param_editgroup_id: String, context: &Context) -> Box + Send> { + fn get_editgroup(&self, param_editgroup_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}", self.base_path, @@ -2700,12 +2700,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_editgroup_annotations( - &self, - param_editgroup_id: String, - param_expand: Option, - context: &Context, - ) -> Box + Send> { + fn get_editgroup_annotations(&self, param_editgroup_id: String, param_expand: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); @@ -2802,7 +2797,7 @@ impl Api for Client { param_before: Option>, param_since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -2881,7 +2876,7 @@ impl Api for Client { param_editgroup: models::Editgroup, param_submit: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_submit = param_submit.map_or_else(String::new, |query| format!("submit={submit}&", submit = query.to_string())); @@ -2976,7 +2971,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_editor(&self, param_editor_id: String, context: &Context) -> Box + Send> { + fn get_editor(&self, param_editor_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editor/{editor_id}", self.base_path, @@ -3047,7 +3042,7 @@ impl Api for Client { param_before: Option>, param_since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); let query_before = param_before.map_or_else(String::new, |query| format!("before={before}&", before = query.to_string())); @@ -3148,7 +3143,7 @@ impl Api for Client { param_before: Option>, param_since: Option>, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); let query_before = param_before.map_or_else(String::new, |query| format!("before={before}&", before = query.to_string())); @@ -3220,7 +3215,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn update_editor(&self, param_editor_id: String, param_editor: models::Editor, context: &Context) -> Box + Send> { + fn update_editor(&self, param_editor_id: String, param_editor: models::Editor, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editor/{editor_id}", self.base_path, @@ -3311,7 +3306,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_file(&self, param_editgroup_id: String, param_entity: models::FileEntity, context: &Context) -> Box + Send> { + fn create_file(&self, param_editgroup_id: String, param_entity: models::FileEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/file", self.base_path, @@ -3402,7 +3397,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_file_auto_batch(&self, param_auto_batch: models::FileAutoBatch, context: &Context) -> Box + Send> { + fn create_file_auto_batch(&self, param_auto_batch: models::FileAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/file/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -3489,7 +3484,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_file(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_file(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/file/{ident}", self.base_path, @@ -3576,7 +3571,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_file_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_file_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/file/edit/{edit_id}", self.base_path, @@ -3663,7 +3658,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_file(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_file(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -3733,7 +3728,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_file_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_file_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/file/edit/{edit_id}", self.base_path, @@ -3797,7 +3792,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_file_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_file_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -3865,7 +3860,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_file_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_file_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/file/{ident}/redirects", self.base_path, @@ -3935,7 +3930,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -4013,7 +4008,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_md5 = param_md5.map_or_else(String::new, |query| format!("md5={md5}&", md5 = query.to_string())); let query_sha1 = param_sha1.map_or_else(String::new, |query| format!("sha1={sha1}&", sha1 = query.to_string())); @@ -4088,7 +4083,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn update_file(&self, param_editgroup_id: String, param_ident: String, param_entity: models::FileEntity, context: &Context) -> Box + Send> { + fn update_file(&self, param_editgroup_id: String, param_ident: String, param_entity: models::FileEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/file/{ident}", self.base_path, @@ -4180,7 +4175,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_fileset(&self, param_editgroup_id: String, param_entity: models::FilesetEntity, context: &Context) -> Box + Send> { + fn create_fileset(&self, param_editgroup_id: String, param_entity: models::FilesetEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/fileset", self.base_path, @@ -4271,7 +4266,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_fileset_auto_batch(&self, param_auto_batch: models::FilesetAutoBatch, context: &Context) -> Box + Send> { + fn create_fileset_auto_batch(&self, param_auto_batch: models::FilesetAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/fileset/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -4358,7 +4353,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_fileset(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_fileset(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/fileset/{ident}", self.base_path, @@ -4445,7 +4440,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_fileset_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_fileset_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/fileset/edit/{edit_id}", self.base_path, @@ -4532,7 +4527,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_fileset(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_fileset(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -4602,7 +4597,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_fileset_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_fileset_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/fileset/edit/{edit_id}", self.base_path, @@ -4666,7 +4661,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_fileset_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_fileset_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -4734,7 +4729,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_fileset_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_fileset_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/fileset/{ident}/redirects", self.base_path, @@ -4804,7 +4799,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -4880,7 +4875,7 @@ impl Api for Client { param_ident: String, param_entity: models::FilesetEntity, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/fileset/{ident}", self.base_path, @@ -4972,7 +4967,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_release(&self, param_editgroup_id: String, param_entity: models::ReleaseEntity, context: &Context) -> Box + Send> { + fn create_release(&self, param_editgroup_id: String, param_entity: models::ReleaseEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/release", self.base_path, @@ -5063,7 +5058,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_release_auto_batch(&self, param_auto_batch: models::ReleaseAutoBatch, context: &Context) -> Box + Send> { + fn create_release_auto_batch(&self, param_auto_batch: models::ReleaseAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/release/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -5150,7 +5145,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_release(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_release(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/release/{ident}", self.base_path, @@ -5237,7 +5232,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_release_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_release_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/release/edit/{edit_id}", self.base_path, @@ -5324,7 +5319,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_release(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -5394,7 +5389,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_release_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/release/edit/{edit_id}", self.base_path, @@ -5458,7 +5453,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_files(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { + fn get_release_files(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -5526,7 +5521,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_filesets(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { + fn get_release_filesets(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -5594,7 +5589,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_release_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -5662,7 +5657,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_release_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/release/{ident}/redirects", self.base_path, @@ -5732,7 +5727,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -5802,7 +5797,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_release_webcaptures(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { + fn get_release_webcaptures(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -5882,10 +5877,12 @@ impl Api for Client { param_jstor: Option, param_ark: Option, param_mag: Option, + param_doaj: Option, + param_dblp: Option, param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_doi = param_doi.map_or_else(String::new, |query| format!("doi={doi}&", doi = query.to_string())); let query_wikidata_qid = param_wikidata_qid.map_or_else(String::new, |query| format!("wikidata_qid={wikidata_qid}&", wikidata_qid = query.to_string())); @@ -5897,11 +5894,13 @@ impl Api for Client { let query_jstor = param_jstor.map_or_else(String::new, |query| format!("jstor={jstor}&", jstor = query.to_string())); let query_ark = param_ark.map_or_else(String::new, |query| format!("ark={ark}&", ark = query.to_string())); let query_mag = param_mag.map_or_else(String::new, |query| format!("mag={mag}&", mag = query.to_string())); + let query_doaj = param_doaj.map_or_else(String::new, |query| format!("doaj={doaj}&", doaj = query.to_string())); + let query_dblp = param_dblp.map_or_else(String::new, |query| format!("dblp={dblp}&", dblp = query.to_string())); let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); let url = format!( - "{}/v0/release/lookup?{doi}{wikidata_qid}{isbn13}{pmid}{pmcid}{core}{arxiv}{jstor}{ark}{mag}{expand}{hide}", + "{}/v0/release/lookup?{doi}{wikidata_qid}{isbn13}{pmid}{pmcid}{core}{arxiv}{jstor}{ark}{mag}{doaj}{dblp}{expand}{hide}", self.base_path, doi = utf8_percent_encode(&query_doi, QUERY_ENCODE_SET), wikidata_qid = utf8_percent_encode(&query_wikidata_qid, QUERY_ENCODE_SET), @@ -5913,6 +5912,8 @@ impl Api for Client { jstor = utf8_percent_encode(&query_jstor, QUERY_ENCODE_SET), ark = utf8_percent_encode(&query_ark, QUERY_ENCODE_SET), mag = utf8_percent_encode(&query_mag, QUERY_ENCODE_SET), + doaj = utf8_percent_encode(&query_doaj, QUERY_ENCODE_SET), + dblp = utf8_percent_encode(&query_dblp, QUERY_ENCODE_SET), expand = utf8_percent_encode(&query_expand, QUERY_ENCODE_SET), hide = utf8_percent_encode(&query_hide, QUERY_ENCODE_SET) ); @@ -5980,7 +5981,7 @@ impl Api for Client { param_ident: String, param_entity: models::ReleaseEntity, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/release/{ident}", self.base_path, @@ -6072,7 +6073,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_webcapture(&self, param_editgroup_id: String, param_entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { + fn create_webcapture(&self, param_editgroup_id: String, param_entity: models::WebcaptureEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/webcapture", self.base_path, @@ -6163,7 +6164,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_webcapture_auto_batch(&self, param_auto_batch: models::WebcaptureAutoBatch, context: &Context) -> Box + Send> { + fn create_webcapture_auto_batch(&self, param_auto_batch: models::WebcaptureAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/webcapture/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -6250,7 +6251,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_webcapture(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_webcapture(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/webcapture/{ident}", self.base_path, @@ -6337,7 +6338,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_webcapture_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_webcapture_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/webcapture/edit/{edit_id}", self.base_path, @@ -6424,13 +6425,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_webcapture( - &self, - param_ident: String, - param_expand: Option, - param_hide: Option, - context: &Context, - ) -> Box + Send> { + fn get_webcapture(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -6500,7 +6495,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_webcapture_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_webcapture_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/webcapture/edit/{edit_id}", self.base_path, @@ -6564,7 +6559,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_webcapture_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_webcapture_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -6632,7 +6627,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_webcapture_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_webcapture_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/webcapture/{ident}/redirects", self.base_path, @@ -6702,7 +6697,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -6778,7 +6773,7 @@ impl Api for Client { param_ident: String, param_entity: models::WebcaptureEntity, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/webcapture/{ident}", self.base_path, @@ -6870,7 +6865,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_work(&self, param_editgroup_id: String, param_entity: models::WorkEntity, context: &Context) -> Box + Send> { + fn create_work(&self, param_editgroup_id: String, param_entity: models::WorkEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/work", self.base_path, @@ -6961,7 +6956,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn create_work_auto_batch(&self, param_auto_batch: models::WorkAutoBatch, context: &Context) -> Box + Send> { + fn create_work_auto_batch(&self, param_auto_batch: models::WorkAutoBatch, context: &Context) -> Box + Send> { let url = format!("{}/v0/editgroup/auto/work/batch", self.base_path); let body = serde_json::to_string(¶m_auto_batch).expect("impossible to fail to serialize"); @@ -7048,7 +7043,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_work(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { + fn delete_work(&self, param_editgroup_id: String, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/work/{ident}", self.base_path, @@ -7135,7 +7130,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn delete_work_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { + fn delete_work_edit(&self, param_editgroup_id: String, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/work/edit/{edit_id}", self.base_path, @@ -7222,7 +7217,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_work(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { + fn get_work(&self, param_ident: String, param_expand: Option, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -7292,7 +7287,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_work_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { + fn get_work_edit(&self, param_edit_id: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/work/edit/{edit_id}", self.base_path, @@ -7356,7 +7351,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_work_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { + fn get_work_history(&self, param_ident: String, param_limit: Option, context: &Context) -> Box + Send> { // Query parameters let query_limit = param_limit.map_or_else(String::new, |query| format!("limit={limit}&", limit = query.to_string())); @@ -7424,7 +7419,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_work_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { + fn get_work_redirects(&self, param_ident: String, context: &Context) -> Box + Send> { let url = format!( "{}/v0/work/{ident}/redirects", self.base_path, @@ -7488,7 +7483,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn get_work_releases(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { + fn get_work_releases(&self, param_ident: String, param_hide: Option, context: &Context) -> Box + Send> { // Query parameters let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -7562,7 +7557,7 @@ impl Api for Client { param_expand: Option, param_hide: Option, context: &Context, - ) -> Box + Send> { + ) -> Box + Send> { // Query parameters let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); @@ -7632,7 +7627,7 @@ impl Api for Client { Box::new(futures::done(result)) } - fn update_work(&self, param_editgroup_id: String, param_ident: String, param_entity: models::WorkEntity, context: &Context) -> Box + Send> { + fn update_work(&self, param_editgroup_id: String, param_ident: String, param_entity: models::WorkEntity, context: &Context) -> Box + Send> { let url = format!( "{}/v0/editgroup/{editgroup_id}/work/{ident}", self.base_path, @@ -7747,7 +7742,7 @@ impl From for ClientInitError { impl fmt::Display for ClientInitError { fn fmt(&self, f: &mut fmt::Formatter) -> fmt::Result { - (self as &dyn fmt::Debug).fmt(f) + (self as &fmt::Debug).fmt(f) } } diff --git a/rust/fatcat-openapi/src/lib.rs b/rust/fatcat-openapi/src/lib.rs index 59255193..d82b7368 100644 --- a/rust/fatcat-openapi/src/lib.rs +++ b/rust/fatcat-openapi/src/lib.rs @@ -1557,6 +1557,8 @@ pub trait Api { jstor: Option, ark: Option, mag: Option, + doaj: Option, + dblp: Option, expand: Option, hide: Option, context: &Context, @@ -1808,6 +1810,8 @@ pub trait ApiNoContext { jstor: Option, ark: Option, mag: Option, + doaj: Option, + dblp: Option, expand: Option, hide: Option, ) -> Box + Send>; @@ -2210,11 +2214,13 @@ impl<'a, T: Api> ApiNoContext for ContextWrapper<'a, T> { jstor: Option, ark: Option, mag: Option, + doaj: Option, + dblp: Option, expand: Option, hide: Option, ) -> Box + Send> { self.api() - .lookup_release(doi, wikidata_qid, isbn13, pmid, pmcid, core, arxiv, jstor, ark, mag, expand, hide, &self.context()) + .lookup_release(doi, wikidata_qid, isbn13, pmid, pmcid, core, arxiv, jstor, ark, mag, doaj, dblp, expand, hide, &self.context()) } fn update_release(&self, editgroup_id: String, ident: String, entity: models::ReleaseEntity) -> Box + Send> { diff --git a/rust/fatcat-openapi/src/models.rs b/rust/fatcat-openapi/src/models.rs index adad2958..c539339e 100644 --- a/rust/fatcat-openapi/src/models.rs +++ b/rust/fatcat-openapi/src/models.rs @@ -1230,6 +1230,16 @@ pub struct ReleaseExtIds { #[serde(rename = "mag")] #[serde(skip_serializing_if = "Option::is_none")] pub mag: Option, + + /// DOAJ article-level identifier + #[serde(rename = "doaj")] + #[serde(skip_serializing_if = "Option::is_none")] + pub doaj: Option, + + /// dblp (https://dblp.uni-trier.de/) paper identifier; eg for conference proceedings + #[serde(rename = "dblp")] + #[serde(skip_serializing_if = "Option::is_none")] + pub dblp: Option, } impl ReleaseExtIds { @@ -1245,6 +1255,8 @@ impl ReleaseExtIds { jstor: None, ark: None, mag: None, + doaj: None, + dblp: None, } } } diff --git a/rust/fatcat-openapi/src/server.rs b/rust/fatcat-openapi/src/server.rs index 539d5d5b..230aea45 100644 --- a/rust/fatcat-openapi/src/server.rs +++ b/rust/fatcat-openapi/src/server.rs @@ -8287,6 +8287,8 @@ where let param_jstor = query_params.get("jstor").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_ark = query_params.get("ark").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_mag = query_params.get("mag").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); + let param_doaj = query_params.get("doaj").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); + let param_dblp = query_params.get("dblp").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_expand = query_params.get("expand").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_hide = query_params.get("hide").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); @@ -8302,6 +8304,8 @@ where param_jstor, param_ark, param_mag, + param_doaj, + param_dblp, param_expand, param_hide, context, -- cgit v1.2.3 From 0fb0c3759a04c025800e3175fb4cbd8d595f8c4b Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:48:33 -0800 Subject: rust: fatcatd changes for DOAJ+dblp identifiers --- rust/Cargo.lock | 1873 ++++++++++++++++++++--------------------- rust/Cargo.toml | 2 +- rust/src/endpoint_handlers.rs | 63 +- rust/src/endpoints.rs | 4 + rust/src/entity_crud.rs | 20 + rust/src/identifiers.rs | 49 ++ 6 files changed, 1062 insertions(+), 949 deletions(-) diff --git a/rust/Cargo.lock b/rust/Cargo.lock index 47748366..6bd42699 100644 --- a/rust/Cargo.lock +++ b/rust/Cargo.lock @@ -4,912 +4,1010 @@ name = "adler32" version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7e522997b529f05601e05166c07ed17789691f562762c7f3b987263d2dedee5c" [[package]] name = "aho-corasick" version = "0.6.9" source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1e9a933f4e58658d7b12defcf96dc5c720f20832deebe3e0a19efd3b6aaeeb9e" dependencies = [ - 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a/rust/src/endpoint_handlers.rs +++ b/rust/src/endpoint_handlers.rs @@ -262,6 +262,8 @@ impl Server { jstor: &Option, ark: &Option, mag: &Option, + doaj: &Option, + dblp: &Option, expand_flags: ExpandFlags, hide_flags: HideFlags, ) -> Result { @@ -276,8 +278,10 @@ impl Server { jstor, ark, mag, + doaj, + dblp, ) { - (Some(doi), None, None, None, None, None, None, None, None, None) => { + (Some(doi), None, None, None, None, None, None, None, None, None, None, None) => { // DOIs always stored lower-case; lookups are case-insensitive let doi = doi.to_lowercase(); check_doi(&doi)?; @@ -288,7 +292,20 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, Some(wikidata_qid), None, None, None, None, None, None, None, None) => { + ( + None, + Some(wikidata_qid), + None, + None, + None, + None, + None, + None, + None, + None, + None, + None, + ) => { check_wikidata_qid(wikidata_qid)?; release_ident::table .inner_join(release_rev::table) @@ -297,7 +314,7 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, Some(isbn13), None, None, None, None, None, None, None) => { + (None, None, Some(isbn13), None, None, None, None, None, None, None, None, None) => { check_isbn13(isbn13)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -310,7 +327,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, Some(pmid), None, None, None, None, None, None) => { + (None, None, None, Some(pmid), None, None, None, None, None, None, None, None) => { check_pmid(pmid)?; release_ident::table .inner_join(release_rev::table) @@ -319,7 +336,7 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, Some(pmcid), None, None, None, None, None) => { + (None, None, None, None, Some(pmcid), None, None, None, None, None, None, None) => { check_pmcid(pmcid)?; release_ident::table .inner_join(release_rev::table) @@ -328,7 +345,7 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, None, Some(core), None, None, None, None) => { + (None, None, None, None, None, Some(core), None, None, None, None, None, None) => { check_core_id(core)?; release_ident::table .inner_join(release_rev::table) @@ -337,7 +354,7 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, None, None, Some(arxiv), None, None, None) => { + (None, None, None, None, None, None, Some(arxiv), None, None, None, None, None) => { // TODO: this allows only lookup by full, versioned arxiv identifier. Probably also // want to allow lookup by "work" style identifier? check_arxiv_id(arxiv)?; @@ -352,7 +369,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, Some(jstor), None, None) => { + (None, None, None, None, None, None, None, Some(jstor), None, None, None, None) => { check_jstor_id(jstor)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -365,7 +382,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, Some(ark), None) => { + (None, None, None, None, None, None, None, None, Some(ark), None, None, None) => { check_ark_id(ark)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -378,7 +395,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, None, Some(mag)) => { + (None, None, None, None, None, None, None, None, None, Some(mag), None, None) => { check_mag_id(mag)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -391,6 +408,32 @@ impl Server { .first(conn)?; (ident, rev) } + (None, None, None, None, None, None, None, None, None, None, Some(doaj), None) => { + check_doaj_id(doaj)?; + let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = + release_rev::table + .inner_join(release_ident::table) + .inner_join(release_rev_extid::table) + .filter(release_rev_extid::extid_type.eq("doaj".to_string())) + .filter(release_rev_extid::value.eq(doaj)) + .filter(release_ident::is_live.eq(true)) + .filter(release_ident::redirect_id.is_null()) + .first(conn)?; + (ident, rev) + } + (None, None, None, None, None, None, None, None, None, None, None, Some(dblp)) => { + check_dblp_id(dblp)?; + let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = + release_rev::table + .inner_join(release_ident::table) + .inner_join(release_rev_extid::table) + .filter(release_rev_extid::extid_type.eq("dblp".to_string())) + .filter(release_rev_extid::value.eq(dblp)) + .filter(release_ident::is_live.eq(true)) + .filter(release_ident::redirect_id.is_null()) + .first(conn)?; + (ident, rev) + } _ => { return Err( FatcatError::MissingOrMultipleExternalId("in lookup".to_string()).into(), diff --git a/rust/src/endpoints.rs b/rust/src/endpoints.rs index 0dd69efd..fda4688c 100644 --- a/rust/src/endpoints.rs +++ b/rust/src/endpoints.rs @@ -689,6 +689,8 @@ impl Api for Server { jstor: Option, ark: Option, mag: Option, + doaj: Option, + dblp: Option, expand: Option, hide: Option, _context: &Context, @@ -716,6 +718,8 @@ impl Api for Server { &jstor, &ark, &mag, + &doaj, + &dblp, expand_flags, hide_flags, ) diff --git a/rust/src/entity_crud.rs b/rust/src/entity_crud.rs index 83dd26c9..89ee83bf 100644 --- a/rust/src/entity_crud.rs +++ b/rust/src/entity_crud.rs @@ -1742,6 +1742,8 @@ impl EntityCrud for ReleaseEntity { jstor: None, ark: None, mag: None, + doaj: None, + dblp: None, }, refs: None, contribs: None, @@ -2018,6 +2020,8 @@ impl EntityCrud for ReleaseEntity { jstor: None, ark: None, mag: None, + doaj: None, + dblp: None, }; let extid_rows: Vec = release_rev_extid::table @@ -2030,6 +2034,8 @@ impl EntityCrud for ReleaseEntity { "jstor" => ext_ids.jstor = Some(extid_row.value), "ark" => ext_ids.ark = Some(extid_row.value), "mag" => ext_ids.mag = Some(extid_row.value), + "doaj" => ext_ids.doaj = Some(extid_row.value), + "dblp" => ext_ids.dblp = Some(extid_row.value), _ => (), } } @@ -2290,6 +2296,20 @@ impl EntityCrud for ReleaseEntity { value: extid.clone(), }); }; + if let Some(extid) = &model.ext_ids.doaj { + release_extid_rows.push(ReleaseExtidRow { + release_rev: *rev_id, + extid_type: "doaj".to_string(), + value: extid.clone(), + }); + }; + if let Some(extid) = &model.ext_ids.dblp { + release_extid_rows.push(ReleaseExtidRow { + release_rev: *rev_id, + extid_type: "dblp".to_string(), + value: extid.clone(), + }); + }; } for (model, rev_id) in models.iter().zip(rev_ids.iter()) { diff --git a/rust/src/identifiers.rs b/rust/src/identifiers.rs index 180dc43b..22ffcc79 100644 --- a/rust/src/identifiers.rs +++ b/rust/src/identifiers.rs @@ -362,6 +362,55 @@ fn test_check_isbn13() { assert!(check_isbn13("9781566199094").is_err()); } +pub fn check_doaj_id(raw: &str) -> Result<()> { + lazy_static! { + static ref RE: Regex = Regex::new(r"^[a-f0-9]{32}$").unwrap(); + } + if raw.is_ascii() && RE.is_match(raw) { + Ok(()) + } else { + Err(FatcatError::MalformedChecksum( + "DOAJ Article Identifier (expected, eg, 'e58f08a11ecb495ead55a44ad4f89808')" + .to_string(), + raw.to_string(), + ))? + } +} + +#[test] +fn test_check_doaj_id() { + assert!(check_doaj_id("e58f08a11ecb495ead55a44ad4f89808").is_ok()); + assert!(check_doaj_id("1b39813549077b2347c0f370c3864b40").is_ok()); + assert!(check_doaj_id("1b39813549077b2347c0f370c3864b40 ").is_err()); + assert!(check_doaj_id("1g39813549077b2347c0f370c3864b40").is_err()); + assert!(check_doaj_id("1B39813549077B2347C0F370c3864b40").is_err()); + assert!(check_doaj_id("1b39813549077b2347c0f370c3864b4").is_err()); + assert!(check_doaj_id("1b39813549077b2347c0f370c3864b411").is_err()); +} + +pub fn check_dblp_id(raw: &str) -> Result<()> { + lazy_static! { + // TODO: what should this actually be? more or less restrictive? + static ref RE: Regex = Regex::new(r"^[a-z]+/[a-zA-Z0-9]+/[a-zA-Z0-9/]+$").unwrap(); + } + if raw.is_ascii() && RE.is_match(raw) { + Ok(()) + } else { + Err(FatcatError::MalformedChecksum( + "dblp Article Key (expected, eg, 'journals/entcs/GoubaultM12')".to_string(), + raw.to_string(), + ))? + } +} + +#[test] +fn test_check_dblp_id() { + assert!(check_dblp_id("journals/entcs/GoubaultM12").is_ok()); + assert!(check_dblp_id("journals/entcs/GoubaultM12").is_ok()); + assert!(check_dblp_id("10.123*").is_err()); + assert!(check_dblp_id("").is_err()); +} + pub fn check_issn(raw: &str) -> Result<()> { lazy_static! { static ref RE: Regex = Regex::new(r"^\d{4}-\d{3}[0-9X]$").unwrap(); -- cgit v1.2.3 From 68bb2a00e56fda04228c13cc2bea90b71002c527 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:48:49 -0800 Subject: rustfmt --- rust/src/bin/fatcatd.rs | 3 +- rust/src/endpoint_handlers.rs | 3 +- rust/src/endpoints.rs | 206 +++++++++++++++++++++++-------------- rust/src/entity_crud.rs | 8 +- rust/tests/test_api_server_http.rs | 5 +- 5 files changed, 138 insertions(+), 87 deletions(-) diff --git a/rust/src/bin/fatcatd.rs b/rust/src/bin/fatcatd.rs index 6f5610f0..b27ff911 100644 --- a/rust/src/bin/fatcatd.rs +++ b/rust/src/bin/fatcatd.rs @@ -35,8 +35,7 @@ impl AfterMiddleware for XClacksOverheadMiddleware { /// Create custom server, wire it to the autogenerated router, /// and pass it to the web server. fn main() -> Result<()> { - let _matches = App::new("server") - .get_matches(); + let _matches = App::new("server").get_matches(); dotenv::dotenv().ok(); diff --git a/rust/src/endpoint_handlers.rs b/rust/src/endpoint_handlers.rs index cc717344..1b7bd0b6 100644 --- a/rust/src/endpoint_handlers.rs +++ b/rust/src/endpoint_handlers.rs @@ -26,7 +26,6 @@ macro_rules! entity_auto_batch_handler { entity_list: &[models::$model], editor_id: FatcatId, ) -> Result { - let editgroup_row = editgroup.db_create(conn, true)?; let editgroup_id = FatcatId::from_uuid(&editgroup_row.id); let edit_context = make_edit_context(editor_id, editgroup_id, true)?; @@ -39,7 +38,7 @@ macro_rules! entity_auto_batch_handler { .get_result(conn)?; self.get_editgroup_handler(conn, editgroup_id) } - } + }; } pub fn get_release_files( diff --git a/rust/src/endpoints.rs b/rust/src/endpoints.rs index fda4688c..7ac0a068 100644 --- a/rust/src/endpoints.rs +++ b/rust/src/endpoints.rs @@ -76,7 +76,6 @@ macro_rules! wrap_entity_handlers { $delete_edit_fn:ident, $delete_edit_resp:ident, $get_rev_fn:ident, $get_rev_resp:ident, $get_redirects_fn:ident, $get_redirects_resp:ident, $model:ident) => { - fn $get_fn( &self, ident: String, @@ -99,11 +98,12 @@ macro_rules! wrap_entity_handlers { let mut entity = $model::db_get(&conn, entity_id, hide_flags)?; entity.db_expand(&conn, expand_flags)?; Ok(entity) - }, + } } - })().map_err(|e| FatcatError::from(e)) { - Ok(entity) => - $get_resp::FoundEntity(entity), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(entity) => $get_resp::FoundEntity(entity), Err(fe) => generic_err_responses!(fe, $get_resp), }; Box::new(futures::done(Ok(ret))) @@ -116,19 +116,27 @@ macro_rules! wrap_entity_handlers { context: &Context, ) -> Box + Send> { let conn = self.db_pool.get().expect("db_pool error"); - let ret = match conn.transaction(|| { - let editgroup_id = FatcatId::from_str(&editgroup_id)?; - let auth_context = self.auth_confectionary.require_auth(&conn, &context.auth_data, Some(stringify!($post_fn)))?; - auth_context.require_role(FatcatRole::Editor)?; - auth_context.require_editgroup(&conn, editgroup_id)?; - let edit_context = make_edit_context(auth_context.editor_id, editgroup_id, false)?; - edit_context.check(&conn)?; - entity.db_create(&conn, &edit_context)?.into_model() - }).map_err(|e| FatcatError::from(e)) { + let ret = match conn + .transaction(|| { + let editgroup_id = FatcatId::from_str(&editgroup_id)?; + let auth_context = self.auth_confectionary.require_auth( + &conn, + &context.auth_data, + Some(stringify!($post_fn)), + )?; + auth_context.require_role(FatcatRole::Editor)?; + auth_context.require_editgroup(&conn, editgroup_id)?; + let edit_context = + make_edit_context(auth_context.editor_id, editgroup_id, false)?; + edit_context.check(&conn)?; + entity.db_create(&conn, &edit_context)?.into_model() + }) + .map_err(|e| FatcatError::from(e)) + { Ok(edit) => { self.metrics.incr("entities.created").ok(); $post_resp::CreatedEntity(edit) - }, + } Err(fe) => generic_auth_err_responses!(fe, $post_resp), }; Box::new(futures::done(Ok(ret))) @@ -141,7 +149,11 @@ macro_rules! wrap_entity_handlers { ) -> Box + Send> { let conn = self.db_pool.get().expect("db_pool error"); let ret = match conn.transaction(|| { - let auth_context = self.auth_confectionary.require_auth(&conn, &context.auth_data, Some(stringify!($post_auto_batch_fn)))?; + let auth_context = self.auth_confectionary.require_auth( + &conn, + &context.auth_data, + Some(stringify!($post_auto_batch_fn)), + )?; auth_context.require_role(FatcatRole::Admin)?; let mut editgroup = auto_batch.editgroup.clone(); // TODO: this is duplicated code with create_editgroup() @@ -151,16 +163,21 @@ macro_rules! wrap_entity_handlers { && !auth_context.has_role(FatcatRole::Admin) { return Err(FatcatError::InsufficientPrivileges( - "not authorized to create editgroups in others' names".to_string() - )) + "not authorized to create editgroups in others' names".to_string(), + )); } } None => { editgroup.editor_id = Some(auth_context.editor_id.to_string()); } }; - self.$post_auto_batch_handler(&conn, editgroup, &auto_batch.entity_list, auth_context.editor_id) - .map_err(|e| FatcatError::from(e)) + self.$post_auto_batch_handler( + &conn, + editgroup, + &auto_batch.entity_list, + auth_context.editor_id, + ) + .map_err(|e| FatcatError::from(e)) }) { Ok(editgroup) => { // TODO: need a count helper on editgroup @@ -168,7 +185,7 @@ macro_rules! wrap_entity_handlers { self.metrics.incr("editgroup.created").ok(); self.metrics.incr("editgroup.accepted").ok(); $post_auto_batch_resp::CreatedEditgroup(editgroup) - }, + } Err(fe) => generic_auth_err_responses!(fe, $post_auto_batch_resp), }; Box::new(futures::done(Ok(ret))) @@ -182,20 +199,30 @@ macro_rules! wrap_entity_handlers { context: &Context, ) -> Box + Send> { let conn = self.db_pool.get().expect("db_pool error"); - let ret = match conn.transaction(|| { - let editgroup_id = FatcatId::from_str(&editgroup_id)?; - let auth_context = self.auth_confectionary.require_auth(&conn, &context.auth_data, Some(stringify!($update_fn)))?; - auth_context.require_role(FatcatRole::Editor)?; - let entity_id = FatcatId::from_str(&ident)?; - auth_context.require_editgroup(&conn, editgroup_id)?; - let edit_context = make_edit_context(auth_context.editor_id, editgroup_id, false)?; - edit_context.check(&conn)?; - entity.db_update(&conn, &edit_context, entity_id)?.into_model() - }).map_err(|e| FatcatError::from(e)) { + let ret = match conn + .transaction(|| { + let editgroup_id = FatcatId::from_str(&editgroup_id)?; + let auth_context = self.auth_confectionary.require_auth( + &conn, + &context.auth_data, + Some(stringify!($update_fn)), + )?; + auth_context.require_role(FatcatRole::Editor)?; + let entity_id = FatcatId::from_str(&ident)?; + auth_context.require_editgroup(&conn, editgroup_id)?; + let edit_context = + make_edit_context(auth_context.editor_id, editgroup_id, false)?; + edit_context.check(&conn)?; + entity + .db_update(&conn, &edit_context, entity_id)? + .into_model() + }) + .map_err(|e| FatcatError::from(e)) + { Ok(edit) => { self.metrics.incr("entities.updated").ok(); $update_resp::UpdatedEntity(edit) - }, + } Err(fe) => generic_auth_err_responses!(fe, $update_resp), }; Box::new(futures::done(Ok(ret))) @@ -208,20 +235,28 @@ macro_rules! wrap_entity_handlers { context: &Context, ) -> Box + Send> { let conn = self.db_pool.get().expect("db_pool error"); - let ret = match conn.transaction(|| { - let editgroup_id = FatcatId::from_str(&editgroup_id)?; - let auth_context = self.auth_confectionary.require_auth(&conn, &context.auth_data, Some(stringify!($delete_fn)))?; - auth_context.require_role(FatcatRole::Editor)?; - let entity_id = FatcatId::from_str(&ident)?; - auth_context.require_editgroup(&conn, editgroup_id)?; - let edit_context = make_edit_context(auth_context.editor_id, editgroup_id, false)?; - edit_context.check(&conn)?; - $model::db_delete(&conn, &edit_context, entity_id)?.into_model() - }).map_err(|e| FatcatError::from(e)) { + let ret = match conn + .transaction(|| { + let editgroup_id = FatcatId::from_str(&editgroup_id)?; + let auth_context = self.auth_confectionary.require_auth( + &conn, + &context.auth_data, + Some(stringify!($delete_fn)), + )?; + auth_context.require_role(FatcatRole::Editor)?; + let entity_id = FatcatId::from_str(&ident)?; + auth_context.require_editgroup(&conn, editgroup_id)?; + let edit_context = + make_edit_context(auth_context.editor_id, editgroup_id, false)?; + edit_context.check(&conn)?; + $model::db_delete(&conn, &edit_context, entity_id)?.into_model() + }) + .map_err(|e| FatcatError::from(e)) + { Ok(edit) => { self.metrics.incr("entities.deleted").ok(); $delete_resp::DeletedEntity(edit) - }, + } Err(fe) => generic_auth_err_responses!(fe, $delete_resp), }; Box::new(futures::done(Ok(ret))) @@ -238,9 +273,10 @@ macro_rules! wrap_entity_handlers { let ret = match (|| { let entity_id = FatcatId::from_str(&ident)?; $model::db_get_history(&conn, entity_id, limit) - })().map_err(|e| FatcatError::from(e)) { - Ok(history) => - $get_history_resp::FoundEntityHistory(history), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(history) => $get_history_resp::FoundEntityHistory(history), Err(fe) => generic_err_responses!(fe, $get_history_resp), }; Box::new(futures::done(Ok(ret))) @@ -268,11 +304,12 @@ macro_rules! wrap_entity_handlers { let mut entity = $model::db_get_rev(&conn, rev_id, hide_flags)?; entity.db_expand(&conn, expand_flags)?; Ok(entity) - }, + } } - })().map_err(|e| FatcatError::from(e)) { - Ok(entity) => - $get_rev_resp::FoundEntityRevision(entity), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(entity) => $get_rev_resp::FoundEntityRevision(entity), Err(fe) => generic_err_responses!(fe, $get_rev_resp), }; Box::new(futures::done(Ok(ret))) @@ -288,9 +325,10 @@ macro_rules! wrap_entity_handlers { let ret = match (|| { let edit_id = Uuid::from_str(&edit_id)?; $model::db_get_edit(&conn, edit_id)?.into_model() - })().map_err(|e| FatcatError::from(e)) { - Ok(edit) => - $get_edit_resp::FoundEdit(edit), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(edit) => $get_edit_resp::FoundEdit(edit), Err(fe) => generic_err_responses!(fe, $get_edit_resp), }; Box::new(futures::done(Ok(ret))) @@ -306,23 +344,29 @@ macro_rules! wrap_entity_handlers { let ret = match conn.transaction(|| { let editgroup_id = FatcatId::from_str(&editgroup_id)?; let edit_id = Uuid::from_str(&edit_id)?; - let auth_context = self.auth_confectionary.require_auth(&conn, &context.auth_data, Some(stringify!($delete_edit_fn)))?; + let auth_context = self.auth_confectionary.require_auth( + &conn, + &context.auth_data, + Some(stringify!($delete_edit_fn)), + )?; auth_context.require_role(FatcatRole::Editor)?; let edit = $model::db_get_edit(&conn, edit_id)?; if !(edit.editgroup_id == editgroup_id.to_uuid()) { return Err(FatcatError::BadRequest( - "editgroup_id parameter didn't match that of the edit".to_string() - )) + "editgroup_id parameter didn't match that of the edit".to_string(), + )); } auth_context.require_editgroup(&conn, editgroup_id)?; // check for editgroup being deleted happens in db_delete_edit() - $model::db_delete_edit(&conn, edit_id) - .map_err(|e| FatcatError::from(e)) + $model::db_delete_edit(&conn, edit_id).map_err(|e| FatcatError::from(e)) }) { - Ok(()) => - $delete_edit_resp::DeletedEdit(Success { - success: true, - message: format!("Successfully deleted work-in-progress {} edit: {}", stringify!($model), edit_id) + Ok(()) => $delete_edit_resp::DeletedEdit(Success { + success: true, + message: format!( + "Successfully deleted work-in-progress {} edit: {}", + stringify!($model), + edit_id + ), }), Err(fe) => generic_auth_err_responses!(fe, $delete_edit_resp), }; @@ -340,15 +384,15 @@ macro_rules! wrap_entity_handlers { let entity_id = FatcatId::from_str(&ident)?; let redirects: Vec = $model::db_get_redirects(&conn, entity_id)?; Ok(redirects.into_iter().map(|fcid| fcid.to_string()).collect()) - })().map_err(|e: Error| FatcatError::from(e)) { - Ok(redirects) => - $get_redirects_resp::FoundEntityRedirects(redirects), + })() + .map_err(|e: Error| FatcatError::from(e)) + { + Ok(redirects) => $get_redirects_resp::FoundEntityRedirects(redirects), Err(fe) => generic_err_responses!(fe, $get_redirects_resp), }; Box::new(futures::done(Ok(ret))) } - - } + }; } macro_rules! wrap_lookup_handler { @@ -371,14 +415,16 @@ macro_rules! wrap_lookup_handler { Some(param) => HideFlags::from_str(¶m).unwrap(), }; // No transaction for GET - let ret = match self.$get_handler(&conn, &$idname, &wikidata_qid, expand_flags, hide_flags).map_err(|e| FatcatError::from(e)) { - Ok(entity) => - $get_resp::FoundEntity(entity), + let ret = match self + .$get_handler(&conn, &$idname, &wikidata_qid, expand_flags, hide_flags) + .map_err(|e| FatcatError::from(e)) + { + Ok(entity) => $get_resp::FoundEntity(entity), Err(fe) => generic_err_responses!(fe, $get_resp), }; Box::new(futures::done(Ok(ret))) } - } + }; } macro_rules! wrap_fcid_handler { @@ -393,14 +439,15 @@ macro_rules! wrap_fcid_handler { let ret = match (|| { let fcid = FatcatId::from_str(&id)?; self.$get_handler(&conn, fcid) - })().map_err(|e| FatcatError::from(e)) { - Ok(entity) => - $get_resp::Found(entity), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(entity) => $get_resp::Found(entity), Err(fe) => generic_err_responses!(fe, $get_resp), }; Box::new(futures::done(Ok(ret))) } - } + }; } macro_rules! wrap_fcid_hide_handler { @@ -420,14 +467,15 @@ macro_rules! wrap_fcid_hide_handler { Some(param) => HideFlags::from_str(¶m)?, }; self.$get_handler(&conn, fcid, hide_flags) - })().map_err(|e| FatcatError::from(e)) { - Ok(entity) => - $get_resp::Found(entity), + })() + .map_err(|e| FatcatError::from(e)) + { + Ok(entity) => $get_resp::Found(entity), Err(fe) => generic_err_responses!(fe, $get_resp), }; Box::new(futures::done(Ok(ret))) } - } + }; } impl Api for Server { diff --git a/rust/src/entity_crud.rs b/rust/src/entity_crud.rs index 89ee83bf..bac8c0fc 100644 --- a/rust/src/entity_crud.rs +++ b/rust/src/entity_crud.rs @@ -334,7 +334,9 @@ macro_rules! generic_db_create { fn db_create(&self, conn: &DbConn, edit_context: &EditContext) -> Result { if self.redirect.is_some() { return Err(FatcatError::BadRequest( - "can't create an entity that redirects from the start".to_string()).into()); + "can't create an entity that redirects from the start".to_string(), + ) + .into()); } let rev_id = self.db_insert_rev(conn)?; let ident: Uuid = insert_into($ident_table::table) @@ -351,7 +353,7 @@ macro_rules! generic_db_create { .get_result(conn)?; Ok(edit) } - } + }; } macro_rules! generic_db_create_batch { @@ -764,7 +766,7 @@ macro_rules! generic_db_insert_rev { fn db_insert_rev(&self, conn: &DbConn) -> Result { Self::db_insert_revs(conn, &[self]).map(|id_list| id_list[0]) } - } + }; } impl EntityCrud for ContainerEntity { diff --git a/rust/tests/test_api_server_http.rs b/rust/tests/test_api_server_http.rs index ae875a05..adab5745 100644 --- a/rust/tests/test_api_server_http.rs +++ b/rust/tests/test_api_server_http.rs @@ -664,7 +664,10 @@ fn test_post_fileset() { helpers::check_http_response( request::post( - &format!("http://localhost:9411/v0/editgroup/{}/fileset", editgroup_id), + &format!( + "http://localhost:9411/v0/editgroup/{}/fileset", + editgroup_id + ), headers.clone(), r#"{"manifest": [ {"path": "new_file.txt", "size": 12345, "sha1": "e9dd75237c94b209dc3ccd52722de6931a310ba3" }, -- cgit v1.2.3 From 526475596777391ff0665982115458f225c86d19 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:51:19 -0800 Subject: python API client: resolve warning about '\d' in string --- python_openapi_client/fatcat_openapi_client/api/default_api.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python_openapi_client/fatcat_openapi_client/api/default_api.py b/python_openapi_client/fatcat_openapi_client/api/default_api.py index eea7e2a0..152b9260 100644 --- a/python_openapi_client/fatcat_openapi_client/api/default_api.py +++ b/python_openapi_client/fatcat_openapi_client/api/default_api.py @@ -9527,7 +9527,7 @@ class DefaultApi(object): len(local_var_params['issnl']) < 9): raise ApiValueError("Invalid value for parameter `issnl` when calling `lookup_container`, length must be greater than or equal to `9`") # noqa: E501 if 'issnl' in local_var_params and not re.search(r'\d{4}-\d{3}[0-9X]', local_var_params['issnl']): # noqa: E501 - raise ApiValueError("Invalid value for parameter `issnl` when calling `lookup_container`, must conform to the pattern `/\d{4}-\d{3}[0-9X]/`") # noqa: E501 + raise ApiValueError(r"Invalid value for parameter `issnl` when calling `lookup_container`, must conform to the pattern `/\d{4}-\d{3}[0-9X]/`") # noqa: E501 collection_formats = {} path_params = {} @@ -9649,7 +9649,7 @@ class DefaultApi(object): len(local_var_params['orcid']) < 19): raise ApiValueError("Invalid value for parameter `orcid` when calling `lookup_creator`, length must be greater than or equal to `19`") # noqa: E501 if 'orcid' in local_var_params and not re.search(r'\d{4}-\d{4}-\d{4}-\d{3}[\dX]', local_var_params['orcid']): # noqa: E501 - raise ApiValueError("Invalid value for parameter `orcid` when calling `lookup_creator`, must conform to the pattern `/\d{4}-\d{4}-\d{4}-\d{3}[\dX]/`") # noqa: E501 + raise ApiValueError(r"Invalid value for parameter `orcid` when calling `lookup_creator`, must conform to the pattern `/\d{4}-\d{4}-\d{4}-\d{3}[\dX]/`") # noqa: E501 collection_formats = {} path_params = {} -- cgit v1.2.3 From e6c92c88e7ce266934167f220a847a20f0f97872 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 15:51:59 -0800 Subject: initial implementation of DOAJ importer Several things to finish implementing and polish. --- python/fatcat_tools/importers/__init__.py | 1 + python/fatcat_tools/importers/doaj_article.py | 289 ++++++++++++++++++++++++++ python/tests/files/example_doaj_articles.json | 5 + python/tests/import_doaj.py | 92 ++++++++ 4 files changed, 387 insertions(+) create mode 100644 python/fatcat_tools/importers/doaj_article.py create mode 100644 python/tests/files/example_doaj_articles.json create mode 100644 python/tests/import_doaj.py diff --git a/python/fatcat_tools/importers/__init__.py b/python/fatcat_tools/importers/__init__.py index c08e04c2..d2928d09 100644 --- a/python/fatcat_tools/importers/__init__.py +++ b/python/fatcat_tools/importers/__init__.py @@ -30,3 +30,4 @@ from .cdl_dash_dat import auto_cdl_dash_dat from .ingest import IngestFileResultImporter, SavePaperNowFileImporter, IngestWebResultImporter from .shadow import ShadowLibraryImporter from .file_meta import FileMetaImporter +from .doaj_article import DoajArticleImporter diff --git a/python/fatcat_tools/importers/doaj_article.py b/python/fatcat_tools/importers/doaj_article.py new file mode 100644 index 00000000..74ac9a0e --- /dev/null +++ b/python/fatcat_tools/importers/doaj_article.py @@ -0,0 +1,289 @@ +""" +Importer for DOAJ article-level metadata, schema v1. + +DOAJ API schema and docs: https://doaj.org/api/v1/docs +""" + +import collections +import datetime +import sys +from typing import List, Dict, Optional + +import langdetect + +import fatcat_openapi_client +from fatcat_tools.normal import clean_doi +from fatcat_tools.transforms import entity_to_dict +from fatcat_tools.importers.common import EntityImporter, clean + +# Cutoff length for abstracts. +MAX_ABSTRACT_LENGTH = 2048 + + +class DoajArticleImporter(EntityImporter): + + def __init__(self, + api, + issn_map_file, + debug=False, + insert_log_file=None, + **kwargs): + + eg_desc = kwargs.get( + 'editgroup_description', + "Automated import of DOAJ article metadata, harvested from REST API or bulk dumps" + ) + eg_extra = kwargs.get('editgroup_extra', dict()) + eg_extra['agent'] = eg_extra.get('agent', + 'fatcat_tools.DoajArticleImporter') + super().__init__(api, + issn_map_file=issn_map_file, + editgroup_description=eg_desc, + editgroup_extra=eg_extra, + **kwargs) + + self.this_year = datetime.datetime.now().year + self.read_issn_map_file(issn_map_file) + + def want(self, obj): + return True + + + def parse_record(self, obj): + """ + bibjson { + abstract (string, optional), + author (Array[bibjson.author], optional), + identifier (Array[bibjson.identifier]), + journal (bibjson.journal, optional), + keywords (Array[string], optional), + link (Array[bibjson.link], optional), + month (string, optional), + subject (Array[bibjson.subject], optional), + title (string), + year (string, optional) + } + bibjson.journal { + country (string, optional), + end_page (string, optional), + language (Array[string], optional), + license (Array[bibjson.journal.license], optional), + number (string, optional), + publisher (string, optional), + start_page (string, optional), + title (string, optional), + volume (string, optional) + } + + TODO: + - release_date + - container_id + - issue (number?) + - license is article license; import as slug + - "open_access" flag in doaj_meta + - container lookup from issns ("issns" key) + """ + + if not obj or not isinstance(obj, dict) or not 'bibjson' in obj: + self.counts['skip-empty'] += 1 + return None + + bibjson = obj['bibjson'] + + title = clean(bibjson.get('title')) + if not title: + self.counts['skip-title'] += 1 + return False + + container_id = None + container_name = None + + volume = clean(bibjson['journal'].get('volume')) + number = clean(bibjson['journal'].get('number')) + publisher = clean(bibjson['journal'].get('publisher')) + + try: + release_year = int(bibjson.get('year')) + except (TypeError, ValueError): + release_year = None + # XXX: parse_month + release_month = clean(bibjson.get('year')) + + # block bogus far-future years/dates + if release_year is not None and (release_year > (self.this_year + 5) or release_year < 1000): + release_month = None + release_year = None + + # country + country = None + # XXX: country = parse_country(bibjson['journal'].get('country')) + + # language + language = None + # XXX: language = parse_language(bibjson['journal'].get('language')) + + # pages + # TODO: error in API docs? seems like start_page not under 'journal' object + start_page = clean(bibjson['journal'].get('start_page')) or clean(bibjson.get('start_page')) + end_page = clean(bibjson['journal'].get('end_page')) or clean(bibjson.get('end_page')) + pages: Optional[str] = None + if start_page and end_page: + pages = f"{start_page}-{end_page}" + elif start_page: + pages = start_page + + doaj_article_id = obj['id'].lower() + ext_ids = self.doaj_ext_ids(bibjson['identifier'], doaj_article_id) + abstracts = self.doaj_abstracts(bibjson) + contribs = self.doaj_contribs(bibjson.get('author') or []) + + # DOAJ-specific extra + doaj_extra = dict() + if bibjson.get('subject'): + doaj_extra['subject'] = bibjson.get('subject') + if bibjson.get('keywords'): + doaj_extra['keywords'] = [k for k in [clean(s) for s in bibjson.get('keywords')] if k] + + # generic extra + extra = dict() + if country: + extra['country'] = country + if not container_id and container_name: + extra['container_name'] = container_name + if release_year and release_month: + # TODO: schema migration + extra['release_month'] = release_month + + if doaj_extra: + extra['doaj'] = doaj_extra + if not extra: + extra = None + + re = fatcat_openapi_client.ReleaseEntity( + work_id=None, + container_id=container_id, + release_type='article-journal', + release_stage='published', + title=title, + release_year=release_year, + #release_date, + publisher=publisher, + ext_ids=ext_ids, + contribs=contribs, + volume=volume, + number=number, # XXX + #issue, + pages=pages, + language=language, + abstracts=abstracts, + extra=extra, + #license_slug=license_slug, + ) + re = self.biblio_hacks(re) + return re + + @staticmethod + def biblio_hacks(re): + """ + This function handles known special cases. For example, + publisher-specific or platform-specific workarounds. + """ + return re + + def try_update(self, re): + + # lookup existing DOI (don't need to try other ext idents for crossref) + existing = None + try: + existing = self.api.lookup_release(doaj=re.ext_ids.doaj) + except fatcat_openapi_client.rest.ApiException as err: + if err.status != 404: + raise err + # doesn't exist, need to update + return True + + # eventually we'll want to support "updates", but for now just skip if + # entity already exists + if existing: + self.counts['exists'] += 1 + return False + + return True + + def insert_batch(self, batch): + self.api.create_release_auto_batch(fatcat_openapi_client.ReleaseAutoBatch( + editgroup=fatcat_openapi_client.Editgroup( + description=self.editgroup_description, + extra=self.editgroup_extra), + entity_list=batch)) + + def doaj_abstracts(self, bibjson: dict) -> List[fatcat_openapi_client.ReleaseAbstract]: + text = clean(bibjson['abstract']) + if not text or len(text) < 10: + return [] + if len(text) > MAX_ABSTRACT_LENGTH: + text = text[:MAX_ABSTRACT_LENGTH] + " [...]" + + # Detect language. This is fuzzy and may be removed, if too unreliable. + lang = None + try: + lang = langdetect.detect(text) + except (langdetect.lang_detect_exception.LangDetectException, TypeError) as err: + #print('[{}] language detection failed with {} on {}'.format(doi, err, text), file=sys.stderr) + pass + + abstract = fatcat_openapi_client.ReleaseAbstract( + mimetype="text/plain", + content=text, + lang=lang, + ) + + return [abstract,] + + def doaj_contribs(self, authors: List[dict]) -> List[fatcat_openapi_client.ReleaseContrib]: + """ + bibjson.author { + affiliation (string, optional), + name (string), + orcid_id (string, optional) + } + """ + contribs = [] + # TODO: index? + for author in authors: + if not author.get('name'): + continue + contribs.append(fatcat_openapi_client.ReleaseContrib( + raw_name=author.get('name'), + # XXX: orcid_id=author.get('orcid_id') or None, + # XXX: affiliation=author.get('affiliation') or None, + )) + return contribs + + def doaj_ext_ids(self, identifiers: List[dict], doaj_article_id: str) -> fatcat_openapi_client.ReleaseExtIds: + """ + bibjson.identifier { + id (string), + type (string) + } + """ + + assert doaj_article_id.isalnum() and len(doaj_article_id) == 32 + + doi: Optional[str] = None + pmid: Optional[str] = None + pmcid: Optional[str] = None + for id_obj in identifiers: + if id_obj['type'].lower() == 'doi': + doi = clean_doi(id_obj['id']) + elif id_obj['type'].lower() == 'pmid': + pmid = id_obj['id'] + elif id_obj['type'].lower() == 'pmcid': + pmcid = id_obj['id'] + + return fatcat_openapi_client.ReleaseExtIds( + doaj=doaj_article_id, + doi=doi, + pmid=pmid, + pmcid=pmcid, + ) diff --git a/python/tests/files/example_doaj_articles.json b/python/tests/files/example_doaj_articles.json new file mode 100644 index 00000000..2cfb7790 --- /dev/null +++ b/python/tests/files/example_doaj_articles.json @@ -0,0 +1,5 @@ +{"last_updated":"2020-02-04T14:11:44Z","bibjson":{"identifier":[{"id":"0264-1275","type":"pissn"},{"id":"10.1016/j.matdes.2016.06.110","type":"DOI"}],"journal":{"volume":"108","number":"","country":"GB","license":[{"open_access":true,"title":"CC BY-NC-ND","type":"CC BY-NC-ND","url":"https://www.elsevier.com/journals/materials-and-design/0264-1275/open-access-journal"}],"issns":["0264-1275","1873-4197"],"publisher":"Elsevier","language":["EN"],"title":"Materials & Design"},"month":"10","end_page":"617","year":"2016","start_page":"608","subject":[{"code":"TA401-492","scheme":"LCC","term":"Materials of engineering and construction. Mechanics of materials"}],"author":[{"affiliation":"State Key Laboratory for Mechanical Behavior of Materials, School of Materials Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China","name":"Xinfeng Li"},{"affiliation":"Department of Geosciences, Center for Materials by Design, State University of New York, Stony Brook, NY 11794-2100, USA","name":"Jin Zhang"},{"affiliation":"School of Chemical Engineering & Technology, China University of Mining and Technology, Xuzhou 221116, China","name":"Yanfei Wang"},{"affiliation":"State Key Laboratory for Mechanical Behavior of Materials, School of Materials Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China","name":"Sicong Shen"},{"affiliation":"State Key Laboratory for Mechanical Behavior of Materials, School of Materials Science and Engineering, Xi'an Jiaotong University, Xi'an 710049, China; Corresponding author.","name":"Xiaolong Song"}],"link":[{"type":"fulltext","url":"http://www.sciencedirect.com/science/article/pii/S0264127516308723"}],"abstract":"The tensile properties and fracture behavior of PH 13-8 Mo steel after subjected to pre-charged hydrogen were investigated by slow strain rate tensile tests. The results suggest that hydrogen slightly increases yield strength, while decreases tensile strength. The susceptibility to hydrogen embrittlement of specimens aged at 650 °C firstly reduces and then increases as the aging time increases, reaching the lowest value at aging time 4 h. This is dominantly attributed to the highest content of austenite. Moreover, hydrogen-induced crack nucleation sites initiate from lath, packet and prior austenite grain boundaries. Crack propagation passes through lath boundaries and walks along packet, prior austenite grain boundaries. Scanning electron microscopy result indicates that hydrogen-charged specimens show quasi-cleavage fracture and intergranular fracture in annular brittle zone while dimple fracture is observed in hydrogen-free specimens. Keywords: Hydrogen embrittlement, PH 13-8 Mo steel, Aging time, Fracture behavior","title":"Effect of hydrogen on tensile properties and fracture behavior of PH 13-8 Mo steel"},"created_date":"2019-06-05T05:25:15Z","id":"e58f08a11ecb495ead55a44ad4f89808"} +{"last_updated":"2020-02-04T08:06:42Z","bibjson":{"identifier":[{"id":"2072-6694","type":"eissn"},{"id":"10.3390/cancers9080107","type":"doi"}],"journal":{"volume":"9","number":"8","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/journal/cancers/about"}],"issns":["2072-6694"],"publisher":"MDPI AG","language":["EN"],"title":"Cancers"},"month":"8","keywords":["ALK rearrangement, lung cancer, biology, immunohistochemistry, FISH, molecular biology."],"year":"2017","start_page":"107","subject":[{"code":"RC254-282","scheme":"LCC","term":"Neoplasms. Tumors. Oncology. Including cancer and carcinogens"}],"author":[{"affiliation":"Laboratory of Clinical and Experimental Pathology, Pasteur Hospital, 30 avenue de la voie romaine, 06001 Nice cedex 01, France","name":"Paul Hofman"}],"link":[{"content_type":"pdf","type":"fulltext","url":"https://www.mdpi.com/2072-6694/9/8/107"}],"abstract":"Patients with advanced-stage non-small cell lung carcinoma (NSCLC) harboring an ALK rearrangement, detected from a tissue sample, can benefit from targeted ALK inhibitor treatment. Several increasingly effective ALK inhibitors are now available for treatment of patients. However, despite an initial favorable response to treatment, in most cases relapse or progression occurs due to resistance mechanisms mainly caused by mutations in the tyrosine kinase domain of ALK. The detection of an ALK rearrangement is pivotal and can be done using different methods, which have variable sensitivity and specificity depending, in particular, on the quality and quantity of the patient’s sample. This review will first highlight briefly some information regarding the pathobiology of an ALK rearrangement and the epidemiology of patients harboring this genomic alteration. The different methods used to detect an ALK rearrangement as well as their advantages and disadvantages will then be examined and algorithms proposed for detection in daily routine practice.","title":"ALK in Non-Small Cell Lung Cancer (NSCLC) Pathobiology, Epidemiology, Detection from Tumor Tissue and Algorithm Diagnosis in a Daily Practice"},"admin":{"seal":true},"created_date":"2018-10-26T07:49:34Z","id":"937c7aa790e048d4ae5f53a2ad71f0dc"} +{"last_updated":"2020-02-04T13:43:13Z","bibjson":{"identifier":[{"id":"1178-2013","type":"pissn"}],"end_page":"818","keywords":["bioconjugation","biosurfactant","cancer therapy","folic acid receptor","graphene quantum dots","theranostic tool"],"year":"2019","subject":[{"code":"R5-920","scheme":"LCC","term":"Medicine (General)"}],"author":[{"name":"Bansal S"},{"name":"Singh J"},{"name":"Kumari U"},{"name":"Kaur IP"},{"name":"Barnwal RP"},{"name":"Kumar R"},{"name":"Singh S"},{"name":"Singh G"},{"name":"Chatterjee M"}],"link":[{"content_type":"html","type":"fulltext","url":"https://www.dovepress.com/development-of-biosurfactant-based-graphene-quantum-dot-conjugate-as-a-peer-reviewed-article-IJN"}],"abstract":"Smriti Bansal,1 Joga Singh,2 Uma Kumari,3 Indu Pal Kaur,2 Ravi Pratap Barnwal,4 Ravinder Kumar,3 Suman Singh,5 Gurpal Singh,2 Mary Chatterjee1 1Biotechnology Engineering, University Institute of Engineering & Technology, Panjab University, Chandigarh, India; 2Department of Pharmaceutical Sciences, University Institute of Pharmaceutical Sciences, Panjab University, Chandigarh, India; 3Department of Zoology, Panjab University, Chandigarh, India; 4Department of Biophysics, Panjab University, Chandigarh, India; 5Department of Agronomics, Central Scientific Instruments Organisation, Chandigarh, India Background: Biosurfactants are amphipathic molecules of microbial origin that reduce surface and interfacial tension at gas–liquid–solid interfaces. Earlier, the biosurfactant was isolated and characterized in our laboratory from Candida parapsilosis. The property of the biosurfactant is further explored in this study by using quantum dots (QDs) as nanocarrier.Materials and methods: Graphene quantum dots (GQDs) were synthesized by bottom-up approach through pyrolysis of citric acid. GQDs were conjugated with both biosurfactant and folic acid (FA) using carbodiimide chemistry. The prepared GQD bioconjugate was studied for diagnostic and therapeutic effects against cancer cells.Results and discussion: Photoluminescence quantum yield (QY) of plain GQDs was measured as 12.8%. QY for biosurfactant conjugated GQDs and FA-biosurfactant conjugated GQDs was measured as 10.4% and 9.02%, respectively, and it was sufficient for targeting cancer cells. MTT assay showed that more than 90% of cells remained viable at concentration of 1 mg/mL, hence GQDs seemed to be non-toxic to cells. Biosurfactant conjugated GQDs caused 50% reduction in cellular viability within 24 hours. FA conjugation further increased the specificity of bioconjugated GQDs toward tumor cells, which is clearly evident from the drug internalization studies using confocal laser scanning microscopy. A higher amount of drug uptake was observed when bioconjugated GQDs were decorated with FA.Conclusion: The ability of GQD bioconjugate could be used as a theranostic tool for cancer. It is foreseen that in near future cancer can be detected and/or treated at an early stage by utilizing biosurfactant conjugated GQDs. Therefore, the proposed study would provide a stepping stone to improve the life of cancer patients. Keywords: bioconjugation, nanomedicine, nanocarrier, cancer therapy, folic acid receptor, graphene quantum dots","title":"Development of biosurfactant-based graphene quantum dot conjugate as a novel and fluorescent theranostic tool for cancer","journal":{"volume":"Volume 14","country":"GB","license":[{"open_access":true,"title":"CC BY-NC","type":"CC BY-NC","url":"https://www.dovepress.com/author_guidelines.php?content_id=695"}],"issns":["1176-9114","1178-2013"],"publisher":"Dove Medical Press","language":["EN"],"title":"International Journal of Nanomedicine"},"month":"1","start_page":"809"},"created_date":"2019-01-29T18:43:40Z","id":"e0173c80437f4fb88ec4e02e453e13b0"} +{"last_updated":"2020-02-04T09:46:14Z","bibjson":{"identifier":[{"id":"1424-8220","type":"eissn"},{"id":"10.3390/s18124467","type":"doi"}],"journal":{"volume":"18","number":"12","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/journal/sensors/about"}],"issns":["1424-8220"],"publisher":"MDPI AG","language":["EN"],"title":"Sensors"},"month":"12","keywords":["multilayer sea ice temperature","low temperature","design","performance analysis"],"year":"2018","start_page":"4467","subject":[{"code":"TP1-1185","scheme":"LCC","term":"Chemical technology"}],"author":[{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Guangyu Zuo"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Yinke Dou"},{"affiliation":"College of Water Resources Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Xiaomin Chang"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Yan Chen"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Chunyan Ma"}],"link":[{"content_type":"pdf","type":"fulltext","url":"https://www.mdpi.com/1424-8220/18/12/4467"}],"abstract":"Temperature profiles of sea ice have been recorded more than a few decades. However, few high-precision temperature sensors can complete the observation of temperature profile of sea ice, especially in extreme environments. At present, the most widely used sea ice observation instruments can reach an accuracy of sea ice temperature measurement of 0.1 °C. In this study, a multilayer sea ice temperature sensor is developed with temperature measurement accuracy from −0.0047 °C to 0.0059 °C. The sensor system composition, structure of the thermistor string, and work mode are analyzed. The performance of the sensor system is evaluated from −50 °C to 30 °C. The temperature dependence of the constant current source, the amplification circuit, and the analog-to-digital converter (ADC) circuit are comprehensive tested and quantified. A temperature correction algorithm is designed to correct any deviation in the sensor system. A sea-ice thickness discrimination algorithm is proposed in charge of determining the thickness of sea ice automatically. The sensor system was field tested in Wuliangsuhai, Yellow River on 31 January 2018 and the second reservoir of Fen River, Yellow River on 30 January 2018. The integral practicality of this sensor system is identified and examined. The multilayer sea ice temperature sensor will provide good temperature results of sea ice and maintain stable performance in the low ambient temperature.","title":"Design and Performance Analysis of a Multilayer Sea Ice Temperature Sensor Used in Polar Region"},"admin":{"seal":true},"created_date":"2018-12-18T08:13:29Z","id":"152f83d12b9f477696e681684ba696e7"} +{"last_updated":"2020-06-02T23:02:32Z","bibjson":{"identifier":[{"id":"10.3390/app10113872","type":"doi"},{"id":"2076-3417","type":"eissn"}],"journal":{"volume":"10","number":"3872","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/about/openaccess"}],"issns":["2076-3417"],"publisher":"MDPI AG","language":["EN"],"title":"Applied Sciences"},"month":"06","keywords":["Smart parking systems","survey","vehicle routing problem","vehicle detection techniques","routing algorithms"],"year":"2020","start_page":"3872","subject":[{"code":"T","scheme":"LCC","term":"Technology"},{"code":"TA1-2040","scheme":"LCC","term":"Engineering (General). Civil engineering (General)"},{"code":"QH301-705.5","scheme":"LCC","term":"Biology (General)"},{"code":"QC1-999","scheme":"LCC","term":"Physics"},{"code":"QD1-999","scheme":"LCC","term":"Chemistry"}],"author":[{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Mathias Gabriel Diaz Ogás"},{"affiliation":"Institute of Informatics and Applications. University of Girona, 17003 Girona, Spain","name":"Ramon Fabregat"},{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Silvana Aciar"}],"link":[{"content_type":"text/html","type":"fulltext","url":"https://www.mdpi.com/2076-3417/10/11/3872"}],"abstract":"The large number of vehicles constantly seeking access to congested areas in cities means that finding a public parking place is often difficult and causes problems for drivers and citizens alike. In this context, strategies that guide vehicles from one point to another, looking for the most optimal path, are needed. Most contributions in the literature are routing strategies that take into account different criteria to select the optimal route required to find a parking space. This paper aims to identify the types of smart parking systems (SPS) that are available today, as well as investigate the kinds of vehicle detection techniques (VDT) they have and the algorithms or other methods they employ, in order to analyze where the development of these systems is at today. To do this, a survey of 274 publications from January 2012 to December 2019 was conducted. The survey considered four principal features: SPS types reported in the literature, the kinds of VDT used in these SPS, the algorithms or methods they implement, and the stage of development at which they are. Based on a search and extraction of results methodology, this work was able to effectively obtain the current state of the research area. In addition, the exhaustive study of the studies analyzed allowed for a discussion to be established concerning the main difficulties, as well as the gaps and open problems detected for the SPS. The results shown in this study may provide a base for future research on the subject.","title":"Survey of Smart Parking Systems"},"admin":{"seal":true},"id":"9cf511bab39445ba9745feb43d7493dd","created_date":"2020-06-03T00:02:28Z"} diff --git a/python/tests/import_doaj.py b/python/tests/import_doaj.py new file mode 100644 index 00000000..a75b574e --- /dev/null +++ b/python/tests/import_doaj.py @@ -0,0 +1,92 @@ + +import json +import datetime + +import pytest + +from fatcat_tools.importers import DoajArticleImporter, JsonLinePusher +from fatcat_tools.transforms import entity_to_dict +import fatcat_openapi_client +from fixtures import api +import json + + +@pytest.fixture(scope="function") +def doaj_importer(api): + with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file: + yield DoajArticleImporter(api, issn_file, bezerk_mode=True) + +@pytest.fixture(scope="function") +def doaj_importer_existing(api): + with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file: + yield DoajArticleImporter(api, issn_file, bezerk_mode=False) + +def test_doaj_importer(doaj_importer): + last_index = doaj_importer.api.get_changelog(limit=1)[0].index + with open("tests/files/example_doaj_articles.json", "r") as f: + doaj_importer.bezerk_mode = True + counts = JsonLinePusher(doaj_importer, f).run() + assert counts["insert"] == 5 + assert counts["exists"] == 0 + assert counts["skip"] == 0 + + # fetch most recent editgroup + change = doaj_importer.api.get_changelog_entry(index=last_index + 1) + eg = change.editgroup + assert eg.description + assert "doaj" in eg.description.lower() + assert eg.extra["git_rev"] + assert "fatcat_tools.DoajArticleImporter" in eg.extra["agent"] + + last_index = doaj_importer.api.get_changelog(limit=1)[0].index + with open("tests/files/example_doaj_articles.json", "r") as f: + doaj_importer.bezerk_mode = False + doaj_importer.reset() + counts = JsonLinePusher(doaj_importer, f).run() + assert counts["insert"] == 0 + assert counts["exists"] == 5 + assert counts["skip"] == 0 + assert last_index == doaj_importer.api.get_changelog(limit=1)[0].index + + +def test_doaj_dict_parse(doaj_importer): + with open("tests/files/example_doaj_articles.json", "r") as f: + raw = json.loads(f.readline()) + r = doaj_importer.parse_record(raw) + # ensure the API server is ok with format + JsonLinePusher(doaj_importer, [json.dumps(raw)]).run() + + assert r.title == "Effect of hydrogen on tensile properties and fracture behavior of PH 13-8 Mo steel" + assert r.publisher == "Elsevier" + assert r.release_type == "article-journal" + assert r.release_stage == "published" + # XXX: assert r.license_slug == "cc-by-nc-nd" + assert r.original_title == None + assert r.ext_ids.doi == "10.1016/j.matdes.2016.06.110" + assert r.ext_ids.doaj == "e58f08a11ecb495ead55a44ad4f89808" + assert r.subtitle == None + assert r.release_date == None + assert r.release_year == 2016 + assert r.volume == "108" + assert r.number == None + assert r.pages == "608-617" + assert r.version == None + # XXX: assert r.language == "en" + # matched by ISSN, so wouldn't be defined normally + # XXX: assert r.extra['container_name'] == "Materials & Design" + assert len(r.abstracts) == 1 + assert len(r.abstracts[0].content) == 1033 + assert len(r.contribs) == 5 + assert r.contribs[0].raw_name == "Xinfeng Li" + assert r.contribs[0].given_name == None + assert r.contribs[0].surname == None + assert not r.refs + + print(r.extra) + # XXX: assert r.extra['release_month'] == 10 + # XXX: assert r.extra['country'] == 'gb' + + #assert r.extra["doaj"]["subjects"] == [ + # {"subject": "Plant Genetic Resource for Food and Agriculture"} + #] + -- cgit v1.2.3 From 90b336ec3fe2cf34b0cbbbf5717aa3883af8685e Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 17:47:50 -0800 Subject: more python normalizers, and move from importer common Moved several normalizer helpers out of fatcat_tools.importers.common to fatcat_tools.normal. Copied language name and country name parser helpers from chocula repository (built on existing pycountry helper library). Have not gone through and refactored other importers to point to these helpers yet; that should be a separate PR when this branch is merged. Current changes are backwards compatible via re-imports. --- python/fatcat_tools/importers/common.py | 158 +--------------- python/fatcat_tools/normal.py | 322 ++++++++++++++++++++++++++++++++ 2 files changed, 326 insertions(+), 154 deletions(-) diff --git a/python/fatcat_tools/importers/common.py b/python/fatcat_tools/importers/common.py index 14415683..3c810391 100644 --- a/python/fatcat_tools/importers/common.py +++ b/python/fatcat_tools/importers/common.py @@ -3,12 +3,9 @@ import re import sys import csv import json -import ftfy -import base64 import sqlite3 import datetime import subprocess -import unicodedata from collections import Counter from confluent_kafka import Consumer, KafkaException import xml.etree.ElementTree as ET @@ -18,162 +15,13 @@ from bs4 import BeautifulSoup import fatcat_openapi_client from fatcat_openapi_client.rest import ApiException +# TODO: refactor so remove need for this (re-imports for backwards compatibility) +from fatcat_tools.normal import (clean_str as clean, is_cjk, b32_hex, LANG_MAP_MARC) # noqa: F401 DATE_FMT = "%Y-%m-%d" SANE_MAX_RELEASES = 200 SANE_MAX_URLS = 100 -# These are very close, but maybe not exactly 1-to-1 with 639-2? Some mix of -# 2/T and 2/B? -# PubMed/MEDLINE and JSTOR use these MARC codes -# https://www.loc.gov/marc/languages/language_name.html -LANG_MAP_MARC = { - 'afr': 'af', - 'alb': 'sq', - 'amh': 'am', - 'ara': 'ar', - 'arm': 'hy', - 'aze': 'az', - 'ben': 'bn', - 'bos': 'bs', - 'bul': 'bg', - 'cat': 'ca', - 'chi': 'zh', - 'cze': 'cs', - 'dan': 'da', - 'dut': 'nl', - 'eng': 'en', - 'epo': 'eo', - 'est': 'et', - 'fin': 'fi', - 'fre': 'fr', - 'geo': 'ka', - 'ger': 'de', - 'gla': 'gd', - 'gre': 'el', - 'heb': 'he', - 'hin': 'hi', - 'hrv': 'hr', - 'hun': 'hu', - 'ice': 'is', - 'ind': 'id', - 'ita': 'it', - 'jpn': 'ja', - 'kin': 'rw', - 'kor': 'ko', - 'lat': 'la', - 'lav': 'lv', - 'lit': 'lt', - 'mac': 'mk', - 'mal': 'ml', - 'mao': 'mi', - 'may': 'ms', - 'nor': 'no', - 'per': 'fa', - 'per': 'fa', - 'pol': 'pl', - 'por': 'pt', - 'pus': 'ps', - 'rum': 'ro', - 'rus': 'ru', - 'san': 'sa', - 'slo': 'sk', - 'slv': 'sl', - 'spa': 'es', - 'srp': 'sr', - 'swe': 'sv', - 'tha': 'th', - 'tur': 'tr', - 'ukr': 'uk', - 'urd': 'ur', - 'vie': 'vi', - 'wel': 'cy', - -# additions - 'gle': 'ga', # "Irish" (Gaelic) - 'jav': 'jv', # Javanese - 'welsh': 'cy', # Welsh - 'oci': 'oc', # Occitan - -# Don't have ISO 639-1 codes - 'grc': 'el', # Ancient Greek; map to modern greek - 'map': None, # Austronesian (collection) - 'syr': None, # Syriac, Modern - 'gem': None, # Old Saxon - 'non': None, # Old Norse - 'emg': None, # Eastern Meohang - 'neg': None, # Negidal - 'mul': None, # Multiple languages - 'und': None, # Undetermined -} - - -def clean(thing, force_xml=False): - """ - This function is appropriate to be called on any random, non-markup string, - such as author names, titles, etc. - - It will try to clean up common unicode mangles, HTML characters, etc. - - This will detect XML/HTML and "do the right thing" (aka, not remove - entities like '&' if there are tags in the string), unless you pass the - 'force_xml' parameter, which might be appropriate for, eg, names and - titles, which generally should be projected down to plain text. - - Also strips extra whitespace. - """ - if not thing: - return None - fix_entities = 'auto' - if force_xml: - fix_entities = True - fixed = ftfy.fix_text(thing, fix_entities=fix_entities).strip() - if not fixed or len(fixed) <= 1: - # wasn't zero-length before, but is now; return None - return None - return fixed - -def test_clean(): - - assert clean(None) == None - assert clean('') == None - assert clean('1') == None - assert clean('123') == '123' - assert clean('a&b') == 'a&b' - assert clean('a&b') == 'a&b' - assert clean('a&b', force_xml=True) == 'a&b' - -def b32_hex(s): - s = s.strip().split()[0].lower() - if s.startswith("sha1:"): - s = s[5:] - if len(s) != 32: - return s - return base64.b16encode(base64.b32decode(s.upper())).lower().decode('utf-8') - -def is_cjk(s): - if not s: - return False - for c in s: - if c.isalpha(): - lang_prefix = unicodedata.name(c).split()[0] - return lang_prefix in ('CJK', 'HIRAGANA', 'KATAKANA', 'HANGUL') - return False - -def test_is_cjk(): - assert is_cjk(None) is False - assert is_cjk('') is False - assert is_cjk('blah') is False - assert is_cjk('岡, 鹿, 梨, 阜, 埼') is True - assert is_cjk('[岡, 鹿, 梨, 阜, 埼]') is True - assert is_cjk('菊') is True - assert is_cjk('岡, 鹿, 梨, 阜, 埼 with eng after') is True - assert is_cjk('水道') is True - assert is_cjk('オウ, イク') is True # kanji - assert is_cjk('ひヒ') is True - assert is_cjk('き゚ゅ') is True - assert is_cjk('ㄴ, ㄹ, ㅁ, ㅂ, ㅅ') is True - DOMAIN_REL_MAP = { "archive.org": "archive", # LOCKSS, Portico, DuraSpace, etc would also be "archive" @@ -444,6 +292,7 @@ class EntityImporter: raise NotImplementedError def is_orcid(self, orcid): + # TODO: replace with clean_orcid() from fatcat_tools.normal return self._orcid_regex.match(orcid) is not None def lookup_orcid(self, orcid): @@ -464,6 +313,7 @@ class EntityImporter: return creator_id def is_doi(self, doi): + # TODO: replace with clean_doi() from fatcat_tools.normal return doi.startswith("10.") and doi.count("/") >= 1 def lookup_doi(self, doi): diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py index 10a90dba..39927651 100644 --- a/python/fatcat_tools/normal.py +++ b/python/fatcat_tools/normal.py @@ -5,6 +5,13 @@ free-form input, titles, etc. """ import re +import base64 +from typing import Optional +import unicodedata + +import ftfy +import langdetect +import pycountry DOI_REGEX = re.compile(r"^10.\d{3,6}/\S+$") @@ -233,3 +240,318 @@ def test_clean_orcid(): assert clean_orcid("0123-4567-3456-6789 ") == "0123-4567-3456-6789" assert clean_orcid("01234567-3456-6780") == None assert clean_orcid("0x23-4567-3456-6780") == None + + +def clean_str(thing: Optional[str], force_xml: bool = False) -> Optional[str]: + """ + This function is appropriate to be called on any random, non-markup string, + such as author names, titles, etc. + + It will try to clean up common unicode mangles, HTML characters, etc. + + This will detect XML/HTML and "do the right thing" (aka, not remove + entities like '&' if there are tags in the string), unless you pass the + 'force_xml' parameter, which might be appropriate for, eg, names and + titles, which generally should be projected down to plain text. + + Also strips extra whitespace. + """ + if not thing: + return None + fix_entities = 'auto' + if force_xml: + fix_entities = True + fixed = ftfy.fix_text(thing, fix_entities=fix_entities).strip() + if not fixed or len(fixed) <= 1: + # wasn't zero-length before, but is now; return None + return None + return fixed + +def test_clean_str(): + + assert clean_str(None) == None + assert clean_str('') == None + assert clean_str('1') == None + assert clean_str('123') == '123' + assert clean_str('a&b') == 'a&b' + assert clean_str('a&b') == 'a&b' + assert clean_str('a&b', force_xml=True) == 'a&b' + +def b32_hex(s): + s = s.strip().split()[0].lower() + if s.startswith("sha1:"): + s = s[5:] + if len(s) != 32: + return s + return base64.b16encode(base64.b32decode(s.upper())).lower().decode('utf-8') + +def is_cjk(s): + if not s: + return False + for c in s: + if c.isalpha(): + lang_prefix = unicodedata.name(c).split()[0] + return lang_prefix in ('CJK', 'HIRAGANA', 'KATAKANA', 'HANGUL') + return False + +def test_is_cjk(): + assert is_cjk(None) is False + assert is_cjk('') is False + assert is_cjk('blah') is False + assert is_cjk('岡, 鹿, 梨, 阜, 埼') is True + assert is_cjk('[岡, 鹿, 梨, 阜, 埼]') is True + assert is_cjk('菊') is True + assert is_cjk('岡, 鹿, 梨, 阜, 埼 with eng after') is True + assert is_cjk('水道') is True + assert is_cjk('オウ, イク') is True # kanji + assert is_cjk('ひヒ') is True + assert is_cjk('き゚ゅ') is True + assert is_cjk('ㄴ, ㄹ, ㅁ, ㅂ, ㅅ') is True + +MONTH_MAP = { + "jan": 1, "january": 1, + "feb": 2, "febuary": 2, + "mar": 3, "march": 3, + "apr": 4, "april": 4, + "may": 5, "may": 5, + "jun": 6, "june": 6, + "jul": 7, "july": 7, + "aug": 8, "august": 8, + "sep": 9, "september": 9, + "oct": 10, "october": 10, + "nov": 11, "nov": 11, + "dec": 12, "december": 12, +} + +def parse_month(raw: Optional[str]) -> Optional[int]: + """ + Parses a string into a month number (1 to 12) + """ + if not raw: + return None + raw = raw.strip().lower() + if raw.isdigit(): + raw_int = int(raw) + if raw_int >= 1 and raw_int <= 12: + return raw_int + else: + return None + if raw in MONTH_MAP: + return MONTH_MAP[raw] + return None + +def test_parse_month() -> None: + + assert parse_month(None) == None + assert parse_month("") == None + assert parse_month("0") == None + assert parse_month("10") == 10 + assert parse_month("jan") == 1 + assert parse_month("September") == 9 + +def detect_text_lang(raw: str) -> Optional[str]: + """ + Tries to determine language of, eg, an abstract. + + Returns an ISO 631 2-char language code, or None. + """ + if not raw: + return None + try: + lang = langdetect.detect(raw) + assert len(lang) == 2 + return lang + except (langdetect.lang_detect_exception.LangDetectException, TypeError): + return None + return None + +def test_detect_text_lang() -> None: + assert detect_text_lang("") == None + EN_SAMPLE = "this is a string of English text for testing" + assert detect_text_lang(EN_SAMPLE) == "en" + JA_SAMPLE = "モーラの種類は、以下に示すように111程度存在する。ただし、研究者により数え方が少しずつ異なる。" + assert detect_text_lang(JA_SAMPLE) == "ja" + +def parse_lang_name(raw: Optional[str]) -> Optional[str]: + """ + Parses a language name and returns a 2-char ISO 631 language code. + """ + if not raw: + return None + try: + lang = pycountry.languages.lookup(raw) + if lang.alpha_3 in ("mul", "mis"): + return None + return lang.alpha_2.lower() + except LookupError: + #print(f" unknown language: '{raw}', file=sys.stderr) + return None + except AttributeError: + #print(f" partial language metadata: '{lang}', file=sys.stderr) + return None + return None + +def test_parse_lang_name() -> None: + + assert parse_lang_name(None) == None + assert parse_lang_name("") == None + assert parse_lang_name("asdf ") == None + assert parse_lang_name("english") == "en" + assert parse_lang_name("ENGLISH") == "en" + assert parse_lang_name("asdf blah") is None + assert parse_lang_name("en") == "en" + assert parse_lang_name("EN") == "en" + assert parse_lang_name("ENG") == "en" + assert parse_lang_name("English") == "en" + assert parse_lang_name("Portuguese") == "pt" + + +def parse_country_name(s: Optional[str]) -> Optional[str]: + """ + Parses a country name into a ISO country code (2-char). + + This version copied from the chocula repository. + """ + if not s or s in ("Unknown"): + return None + + s = s.strip() + if s.lower() in ("usa", "new york (state)", "washington (state)"): + return "us" + if s.lower() in ("russia (federation)", "russia"): + return "ru" + if s == "Québec (Province)": + s = "Canada" + if s == "China (Republic : 1949- )": + return "tw" + if s == "Brunei": + return "bn" + if s.startswith("Congo "): + s = "Congo" + if s.lower() == "iran": + return "ir" + if s.lower() == "bermuda islands": + return "bm" + if s.lower() == "burma": + s = "myanmar" + if s.lower() in ("korea (south)", "south korea"): + return "kr" + if s.lower() in ("england", "scotland", "wales"): + return "uk" + s = s.replace(" (Republic)", "").replace(" (Federation)", "") + + try: + country = pycountry.countries.lookup(s) + except LookupError: + country = None + + if country: + return country.alpha_2.lower() + try: + sub = pycountry.subdivisions.lookup(s) + except LookupError: + sub = None + + s = s.replace(" (State)", "").replace(" (Province)", "") + if sub: + return sub.country_code.lower() + + else: + # print(f"unknown country: {s}", file=sys.stderr) + return None + + +def test_parse_country_name(): + assert parse_country_name("") is None + assert parse_country_name("asdf blah") is None + assert parse_country_name("us") == "us" + assert parse_country_name("USA") == "us" + assert parse_country_name("United States of America") == "us" + assert parse_country_name("united States") == "us" + assert parse_country_name("Massachusetts") == "us" + assert parse_country_name("Russia") == "ru" + assert parse_country_name("Japan") == "jp" + +# These are very close, but maybe not exactly 1-to-1 with 639-2? Some mix of +# 2/T and 2/B? +# PubMed/MEDLINE and JSTOR use these MARC codes +# https://www.loc.gov/marc/languages/language_name.html +LANG_MAP_MARC = { + 'afr': 'af', + 'alb': 'sq', + 'amh': 'am', + 'ara': 'ar', + 'arm': 'hy', + 'aze': 'az', + 'ben': 'bn', + 'bos': 'bs', + 'bul': 'bg', + 'cat': 'ca', + 'chi': 'zh', + 'cze': 'cs', + 'dan': 'da', + 'dut': 'nl', + 'eng': 'en', + 'epo': 'eo', + 'est': 'et', + 'fin': 'fi', + 'fre': 'fr', + 'geo': 'ka', + 'ger': 'de', + 'gla': 'gd', + 'gre': 'el', + 'heb': 'he', + 'hin': 'hi', + 'hrv': 'hr', + 'hun': 'hu', + 'ice': 'is', + 'ind': 'id', + 'ita': 'it', + 'jpn': 'ja', + 'kin': 'rw', + 'kor': 'ko', + 'lat': 'la', + 'lav': 'lv', + 'lit': 'lt', + 'mac': 'mk', + 'mal': 'ml', + 'mao': 'mi', + 'may': 'ms', + 'nor': 'no', + 'per': 'fa', + 'per': 'fa', + 'pol': 'pl', + 'por': 'pt', + 'pus': 'ps', + 'rum': 'ro', + 'rus': 'ru', + 'san': 'sa', + 'slo': 'sk', + 'slv': 'sl', + 'spa': 'es', + 'srp': 'sr', + 'swe': 'sv', + 'tha': 'th', + 'tur': 'tr', + 'ukr': 'uk', + 'urd': 'ur', + 'vie': 'vi', + 'wel': 'cy', + +# additions + 'gle': 'ga', # "Irish" (Gaelic) + 'jav': 'jv', # Javanese + 'welsh': 'cy', # Welsh + 'oci': 'oc', # Occitan + +# Don't have ISO 639-1 codes + 'grc': 'el', # Ancient Greek; map to modern greek + 'map': None, # Austronesian (collection) + 'syr': None, # Syriac, Modern + 'gem': None, # Old Saxon + 'non': None, # Old Norse + 'emg': None, # Eastern Meohang + 'neg': None, # Negidal + 'mul': None, # Multiple languages + 'und': None, # Undetermined +} -- cgit v1.2.3 From c9bfb0be4c7e38b6668f49588f2ffecee7b17912 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 18:38:06 -0800 Subject: handle more non-ASCII DOI cases --- python/fatcat_tools/normal.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py index 39927651..ed439225 100644 --- a/python/fatcat_tools/normal.py +++ b/python/fatcat_tools/normal.py @@ -62,7 +62,7 @@ def clean_doi(raw): # will likely want to expand DOI_REGEX to exclude non-ASCII characters, but # for now block specific characters so we can get PubMed importer running # again. - if 'ä' in raw or '\u200e' in raw: + if 'ä' in raw or 'á' in raw or '\u200e' in raw or '\u2043' in raw: return None return raw @@ -79,6 +79,8 @@ def test_clean_doi(): assert clean_doi("10.4149/gpb¬_2017042") == None # "logical negation" character assert clean_doi("10.6002/ect.2020.häyry") == None # this example via pubmed (pmid:32519616) assert clean_doi("10.30466/vrf.2019.98547.2350\u200e") == None + assert clean_doi("10.12016/j.issn.2096⁃1456.2017.06.014") == None + assert clean_doi("10.4025/diálogos.v17i2.36030") == None ARXIV_ID_REGEX = re.compile(r"^(\d{4}.\d{4,5}|[a-z\-]+(\.[A-Z]{2})?/\d{7})(v\d+)?$") -- cgit v1.2.3 From 92db2c8bb2464db8455b61b245a007cb57f2c92f Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 19:40:54 -0800 Subject: implement remainder of DOAJ article importer --- python/fatcat_import.py | 37 ++++++ python/fatcat_tools/importers/doaj_article.py | 182 ++++++++++++++++++-------- python/tests/import_doaj.py | 17 +-- 3 files changed, 168 insertions(+), 68 deletions(-) diff --git a/python/fatcat_import.py b/python/fatcat_import.py index 19cf43ec..ff6c94dc 100755 --- a/python/fatcat_import.py +++ b/python/fatcat_import.py @@ -256,6 +256,24 @@ def run_datacite(args): else: JsonLinePusher(dci, args.json_file).run() +def run_doaj_article(args): + dai = DoajArticleImporter(args.api, + args.issn_map_file, + edit_batch_size=args.batch_size, + do_updates=args.do_updates, + ) + if args.kafka_mode: + KafkaJsonPusher( + dai, + args.kafka_hosts, + args.kafka_env, + "api-doaj", + "fatcat-{}-import-doaj".format(args.kafka_env), + consume_batch_size=args.batch_size, + ).run() + else: + JsonLinePusher(dai, args.json_file).run() + def run_file_meta(args): # do_updates defaults to true for this importer fmi = FileMetaImporter(args.api, @@ -606,6 +624,25 @@ def main(): auth_var="FATCAT_AUTH_WORKER_DATACITE", ) + sub_doaj_article = subparsers.add_parser('doaj-article', + help="import doaj.org article metadata") + sub_doaj_article.add_argument('json_file', + help="File with JSON lines from DOAJ API (or bulk dump) to import from", + default=sys.stdin, type=argparse.FileType('r')) + sub_doaj_article.add_argument('--issn-map-file', + help="ISSN to ISSN-L mapping file", + default=None, type=argparse.FileType('r')) + sub_doaj_article.add_argument('--kafka-mode', + action='store_true', + help="consume from kafka topic (not stdin)") + sub_doaj_article.add_argument('--do-updates', + action='store_true', + help="update any pre-existing release entities") + sub_doaj_article.set_defaults( + func=run_doaj_article, + auth_var="FATCAT_AUTH_WORKER_DOAJ", + ) + sub_file_meta = subparsers.add_parser('file-meta', help="simple update-only importer for file metadata") sub_file_meta.set_defaults( diff --git a/python/fatcat_tools/importers/doaj_article.py b/python/fatcat_tools/importers/doaj_article.py index 74ac9a0e..c0e75283 100644 --- a/python/fatcat_tools/importers/doaj_article.py +++ b/python/fatcat_tools/importers/doaj_article.py @@ -4,17 +4,15 @@ Importer for DOAJ article-level metadata, schema v1. DOAJ API schema and docs: https://doaj.org/api/v1/docs """ -import collections +import warnings import datetime -import sys -from typing import List, Dict, Optional - -import langdetect +from typing import List, Optional import fatcat_openapi_client -from fatcat_tools.normal import clean_doi -from fatcat_tools.transforms import entity_to_dict -from fatcat_tools.importers.common import EntityImporter, clean +from fatcat_tools.normal import (clean_doi, clean_str, parse_month, + clean_orcid, detect_text_lang, parse_lang_name, parse_country_name, + clean_pmid, clean_pmcid) +from fatcat_tools.importers.common import EntityImporter # Cutoff length for abstracts. MAX_ABSTRACT_LENGTH = 2048 @@ -48,7 +46,6 @@ class DoajArticleImporter(EntityImporter): def want(self, obj): return True - def parse_record(self, obj): """ bibjson { @@ -74,14 +71,6 @@ class DoajArticleImporter(EntityImporter): title (string, optional), volume (string, optional) } - - TODO: - - release_date - - container_id - - issue (number?) - - license is article license; import as slug - - "open_access" flag in doaj_meta - - container lookup from issns ("issns" key) """ if not obj or not isinstance(obj, dict) or not 'bibjson' in obj: @@ -90,42 +79,51 @@ class DoajArticleImporter(EntityImporter): bibjson = obj['bibjson'] - title = clean(bibjson.get('title')) + title = clean_str(bibjson.get('title'), force_xml=True) if not title: self.counts['skip-title'] += 1 return False + container_name = clean_str(bibjson['journal']['title']) container_id = None - container_name = None - - volume = clean(bibjson['journal'].get('volume')) - number = clean(bibjson['journal'].get('number')) - publisher = clean(bibjson['journal'].get('publisher')) + # NOTE: 'issns' not documented in API schema + for issn in bibjson['journal']['issns']: + issnl = self.issn2issnl(issn) + if issnl: + container_id = self.lookup_issnl(self.issn2issnl(issn)) + if container_id: + # don't store container_name when we have an exact match + container_name = None + break + + volume = clean_str(bibjson['journal'].get('volume')) + # NOTE: this schema seems to use "number" as "issue number" + issue = clean_str(bibjson['journal'].get('number')) + publisher = clean_str(bibjson['journal'].get('publisher')) try: release_year = int(bibjson.get('year')) except (TypeError, ValueError): release_year = None - # XXX: parse_month - release_month = clean(bibjson.get('year')) + release_month = parse_month(clean_str(bibjson.get('month'))) # block bogus far-future years/dates if release_year is not None and (release_year > (self.this_year + 5) or release_year < 1000): release_month = None release_year = None - # country - country = None - # XXX: country = parse_country(bibjson['journal'].get('country')) - - # language + license_slug = self.doaj_license_slug(bibjson['journal'].get('license')) + country = parse_country_name(bibjson['journal'].get('country')) language = None - # XXX: language = parse_language(bibjson['journal'].get('language')) + for raw in bibjson['journal'].get('language') or []: + language = parse_lang_name(raw) + if language: + break # pages - # TODO: error in API docs? seems like start_page not under 'journal' object - start_page = clean(bibjson['journal'].get('start_page')) or clean(bibjson.get('start_page')) - end_page = clean(bibjson['journal'].get('end_page')) or clean(bibjson.get('end_page')) + # NOTE: error in API docs? seems like start_page not under 'journal' object + start_page = clean_str(bibjson['journal'].get('start_page')) or clean_str(bibjson.get('start_page')) + end_page = clean_str(bibjson['journal'].get('end_page')) or clean_str(bibjson.get('end_page')) pages: Optional[str] = None if start_page and end_page: pages = f"{start_page}-{end_page}" @@ -136,13 +134,13 @@ class DoajArticleImporter(EntityImporter): ext_ids = self.doaj_ext_ids(bibjson['identifier'], doaj_article_id) abstracts = self.doaj_abstracts(bibjson) contribs = self.doaj_contribs(bibjson.get('author') or []) - + # DOAJ-specific extra doaj_extra = dict() if bibjson.get('subject'): doaj_extra['subject'] = bibjson.get('subject') if bibjson.get('keywords'): - doaj_extra['keywords'] = [k for k in [clean(s) for s in bibjson.get('keywords')] if k] + doaj_extra['keywords'] = [k for k in [clean_str(s) for s in bibjson.get('keywords')] if k] # generic extra extra = dict() @@ -171,13 +169,12 @@ class DoajArticleImporter(EntityImporter): ext_ids=ext_ids, contribs=contribs, volume=volume, - number=number, # XXX - #issue, + issue=issue, pages=pages, language=language, abstracts=abstracts, extra=extra, - #license_slug=license_slug, + license_slug=license_slug, ) re = self.biblio_hacks(re) return re @@ -192,7 +189,7 @@ class DoajArticleImporter(EntityImporter): def try_update(self, re): - # lookup existing DOI (don't need to try other ext idents for crossref) + # lookup existing release by DOAJ article id existing = None try: existing = self.api.lookup_release(doaj=re.ext_ids.doaj) @@ -202,13 +199,62 @@ class DoajArticleImporter(EntityImporter): # doesn't exist, need to update return True - # eventually we'll want to support "updates", but for now just skip if - # entity already exists - if existing: + # then try other ext_id lookups + if not existing: + for extid_type in ('doi', 'pmid', 'pmcid'): + extid_val = re.ext_ids.__dict__[extid_type] + if not extid_val: + continue + try: + existing = self.api.lookup_release(**{extid_type: extid_val}) + except fatcat_openapi_client.rest.ApiException as err: + if err.status != 404: + raise err + if existing: + if existing.ext_ids.doaj: + warn_str = f"unexpected DOAJ ext_id match after lookup failed doaj={re.ext_ids.doaj} ident={existing.ident}" + warnings.warn(warn_str) + self.counts["skip-doaj-id-mismatch"] += 1 + return None + break + + # TODO: in the future could do fuzzy match here, eg using elasticsearch + + # create entity + if not existing: + return True + + # other logic could go here about skipping updates + if not self.do_updates or existing.ext_ids.doaj: self.counts['exists'] += 1 return False - return True + # fields to copy over for update + existing.ext_ids.doaj = existing.ext_ids.doaj or re.ext_ids.doaj + existing.release_type = existing.release_type or re.release_type + existing.release_stage = existing.release_stage or re.release_stage + existing.container_id = existing.container_id or re.container_id + existing.abstracts = existing.abstracts or re.abstracts + existing.extra['doaj'] = re.extra['doaj'] + existing.volume = existing.volume or re.volume + existing.issue = existing.issue or re.issue + existing.pages = existing.pages or re.pages + existing.language = existing.language or re.language + + try: + self.api.update_release(self.get_editgroup_id(), existing.ident, existing) + self.counts['update'] += 1 + except fatcat_openapi_client.rest.ApiException as err: + # there is a code path where we try to update the same release + # twice in a row; if that happens, just skip + # NOTE: API behavior might change in the future? + if "release_edit_editgroup_id_ident_id_key" in err.body: + self.counts['skip-update-conflict'] += 1 + return False + else: + raise err + + return False def insert_batch(self, batch): self.api.create_release_auto_batch(fatcat_openapi_client.ReleaseAutoBatch( @@ -218,19 +264,13 @@ class DoajArticleImporter(EntityImporter): entity_list=batch)) def doaj_abstracts(self, bibjson: dict) -> List[fatcat_openapi_client.ReleaseAbstract]: - text = clean(bibjson['abstract']) + text = clean_str(bibjson.get('abstract')) if not text or len(text) < 10: return [] if len(text) > MAX_ABSTRACT_LENGTH: text = text[:MAX_ABSTRACT_LENGTH] + " [...]" - # Detect language. This is fuzzy and may be removed, if too unreliable. - lang = None - try: - lang = langdetect.detect(text) - except (langdetect.lang_detect_exception.LangDetectException, TypeError) as err: - #print('[{}] language detection failed with {} on {}'.format(doi, err, text), file=sys.stderr) - pass + lang = detect_text_lang(text) abstract = fatcat_openapi_client.ReleaseAbstract( mimetype="text/plain", @@ -249,15 +289,22 @@ class DoajArticleImporter(EntityImporter): } """ contribs = [] - # TODO: index? + index = 0 for author in authors: if not author.get('name'): continue + creator_id = None + orcid = clean_orcid(author.get('orcid_id')) + if orcid: + creator_id = self.lookup_orcid(orcid) contribs.append(fatcat_openapi_client.ReleaseContrib( raw_name=author.get('name'), - # XXX: orcid_id=author.get('orcid_id') or None, - # XXX: affiliation=author.get('affiliation') or None, + role='author', + index=index, + creator_id=creator_id, + raw_affiliation=clean_str(author.get('affiliation')), )) + index += 1 return contribs def doaj_ext_ids(self, identifiers: List[dict], doaj_article_id: str) -> fatcat_openapi_client.ReleaseExtIds: @@ -277,9 +324,9 @@ class DoajArticleImporter(EntityImporter): if id_obj['type'].lower() == 'doi': doi = clean_doi(id_obj['id']) elif id_obj['type'].lower() == 'pmid': - pmid = id_obj['id'] + pmid = clean_pmid(id_obj['id']) elif id_obj['type'].lower() == 'pmcid': - pmcid = id_obj['id'] + pmcid = clean_pmcid(id_obj['id']) return fatcat_openapi_client.ReleaseExtIds( doaj=doaj_article_id, @@ -287,3 +334,24 @@ class DoajArticleImporter(EntityImporter): pmid=pmid, pmcid=pmcid, ) + + def doaj_license_slug(self, license_list: List[dict]) -> Optional[str]: + """ + bibjson.journal.license { + open_access (boolean, optional), + title (string, optional), + type (string, optional), + url (string, optional), + version (string, optional) + } + """ + if not license_list: + return None + for license in license_list: + if not license.get('open_access'): + continue + slug = license.get('type') + if slug.startswith('CC '): + slug = slug.replace('CC ', 'cc-').lower() + return slug + return None diff --git a/python/tests/import_doaj.py b/python/tests/import_doaj.py index a75b574e..bceb1343 100644 --- a/python/tests/import_doaj.py +++ b/python/tests/import_doaj.py @@ -60,7 +60,7 @@ def test_doaj_dict_parse(doaj_importer): assert r.publisher == "Elsevier" assert r.release_type == "article-journal" assert r.release_stage == "published" - # XXX: assert r.license_slug == "cc-by-nc-nd" + assert r.license_slug == "cc-by-nc-nd" assert r.original_title == None assert r.ext_ids.doi == "10.1016/j.matdes.2016.06.110" assert r.ext_ids.doaj == "e58f08a11ecb495ead55a44ad4f89808" @@ -71,9 +71,9 @@ def test_doaj_dict_parse(doaj_importer): assert r.number == None assert r.pages == "608-617" assert r.version == None - # XXX: assert r.language == "en" + assert r.language == "en" # matched by ISSN, so wouldn't be defined normally - # XXX: assert r.extra['container_name'] == "Materials & Design" + assert r.extra['container_name'] == "Materials & Design" assert len(r.abstracts) == 1 assert len(r.abstracts[0].content) == 1033 assert len(r.contribs) == 5 @@ -82,11 +82,6 @@ def test_doaj_dict_parse(doaj_importer): assert r.contribs[0].surname == None assert not r.refs - print(r.extra) - # XXX: assert r.extra['release_month'] == 10 - # XXX: assert r.extra['country'] == 'gb' - - #assert r.extra["doaj"]["subjects"] == [ - # {"subject": "Plant Genetic Resource for Food and Agriculture"} - #] - + #print(r.extra) + assert r.extra['release_month'] == 10 + assert r.extra['country'] == 'gb' -- cgit v1.2.3 From 6b948b6b6d480940571de244c664efe420e05d50 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 19:41:56 -0800 Subject: if a release has DOAJ article id, count as OA --- python/fatcat_tools/transforms/elasticsearch.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/python/fatcat_tools/transforms/elasticsearch.py b/python/fatcat_tools/transforms/elasticsearch.py index dfb5f799..96a5b96b 100644 --- a/python/fatcat_tools/transforms/elasticsearch.py +++ b/python/fatcat_tools/transforms/elasticsearch.py @@ -213,6 +213,9 @@ def release_to_elasticsearch(entity, force_bool=True): t['best_pdf_url'] = best_pdf_url or good_pdf_url or any_pdf_url t['ia_pdf_url'] = ia_pdf_url + if release.ext_ids.doaj: + is_oa = True + if release.license_slug: # TODO: more/better checks here, particularly strict *not* OA licenses if release.license_slug.startswith("CC-"): -- cgit v1.2.3 From 30fb9af4ba786cabd19bf4693eb8a0395669f54f Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 19:42:24 -0800 Subject: show DOAJ (and dblp) identifiers in release view --- python/fatcat_web/templates/release_view.html | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/python/fatcat_web/templates/release_view.html b/python/fatcat_web/templates/release_view.html index 7836ef77..cc9cf5fe 100644 --- a/python/fatcat_web/templates/release_view.html +++ b/python/fatcat_web/templates/release_view.html @@ -308,7 +308,7 @@ accessible version. {% endif %} -{% if release.number or release.ext_ids.doi or release.ext_ids.pmid or release.ext_ids.pmcid or release.ext_ids.wikidata_qid or release.ext_ids.isbn13 or release.ext_ids.arxiv or release.ext_ids.jstor or release.ext_ids.ark %} +{% if release.number or release.ext_ids.doi or release.ext_ids.pmid or release.ext_ids.pmcid or release.ext_ids.wikidata_qid or release.ext_ids.isbn13 or release.ext_ids.arxiv or release.ext_ids.jstor or release.ext_ids.ark or release.ext_ids.doaj or release.ext_ids.dblp %}
{% if release.number %} Number  {{ release.number }}
@@ -337,6 +337,12 @@ accessible version. {% if release.ext_ids.ark != None %} ARK  {{ release.ext_ids.ark }}
{% endif %} +{% if release.ext_ids.doaj != None %} + DOAJ  {{ release.ext_ids.doaj[:20] }}...
+{% endif %} +{% if release.ext_ids.dblp != None %} + dblp  {{ release.ext_ids.dblp }}
+{% endif %}
{% endif %} -- cgit v1.2.3 From c3d2fa0d89a65d6fed66b0b7da64195e51101bf7 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Tue, 17 Nov 2020 19:50:57 -0800 Subject: tweak DOAJ importer class args and default for do_updates --- python/fatcat_tools/importers/doaj_article.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python/fatcat_tools/importers/doaj_article.py b/python/fatcat_tools/importers/doaj_article.py index c0e75283..30007857 100644 --- a/python/fatcat_tools/importers/doaj_article.py +++ b/python/fatcat_tools/importers/doaj_article.py @@ -23,8 +23,6 @@ class DoajArticleImporter(EntityImporter): def __init__(self, api, issn_map_file, - debug=False, - insert_log_file=None, **kwargs): eg_desc = kwargs.get( @@ -34,6 +32,8 @@ class DoajArticleImporter(EntityImporter): eg_extra = kwargs.get('editgroup_extra', dict()) eg_extra['agent'] = eg_extra.get('agent', 'fatcat_tools.DoajArticleImporter') + # ensure default is to not do updates with this worker (override super() default) + kwargs['do_updates'] = kwargs.get("do_updates", False) super().__init__(api, issn_map_file=issn_map_file, editgroup_description=eg_desc, -- cgit v1.2.3 From e29142c986defd308a391c812e57f5d8df575cde Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 12:18:02 -0800 Subject: schema: also add 'oai' identifer (OAI-PMH) for releases --- CHANGELOG.md | 4 ++-- fatcat-openapi2.yml | 7 +++++++ 2 files changed, 9 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index caf816e2..4757a85a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -42,11 +42,11 @@ changes to API. ## [0.3.3] - 2020-11-16 Minor additions to the API schema: new external identifiers for release -entities, for `doaj` and `dblp`. Database schema (SQL) not changed. +entities, for `doaj`, `dblp`, and `oai`. Database schema (SQL) not changed. ### Added -- two new release external identifiers: `doaj` (article-level) and `dblp` (also +- two new release external identifiers: `doaj`, `dblp`, and `oai` (all article-level). These are API changes, but backwards compatible. ## [0.3.2] - 2020-04-08 diff --git a/fatcat-openapi2.yml b/fatcat-openapi2.yml index f3a91768..ce0d8331 100644 --- a/fatcat-openapi2.yml +++ b/fatcat-openapi2.yml @@ -903,6 +903,9 @@ definitions: dblp: type: string description: "dblp (https://dblp.uni-trier.de/) paper identifier; eg for conference proceedings" + oai: + type: string + description: "OAI-PMH identifier; only used when an OAI-PMH record is the only authoritative metadata (eg, journal OAI-PMH feeds w/o DOIs)" release_abstract: type: object properties: @@ -3109,6 +3112,10 @@ paths: in: query type: string required: false + - name: oai + in: query + type: string + required: false - name: expand in: query type: string -- cgit v1.2.3 From ba4a85cf2ee51d775137541944e2e9d24b2e1bc9 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 12:18:30 -0800 Subject: codegen python openapi client --- .../fatcat_openapi_client/api/default_api.py | 6 +++- .../models/release_ext_ids.py | 34 ++++++++++++++++++++-- 2 files changed, 36 insertions(+), 4 deletions(-) diff --git a/python_openapi_client/fatcat_openapi_client/api/default_api.py b/python_openapi_client/fatcat_openapi_client/api/default_api.py index 152b9260..ab2913d4 100644 --- a/python_openapi_client/fatcat_openapi_client/api/default_api.py +++ b/python_openapi_client/fatcat_openapi_client/api/default_api.py @@ -9857,6 +9857,7 @@ class DefaultApi(object): :param str mag: :param str doaj: :param str dblp: + :param str oai: :param str expand: List of sub-entities to expand in response. See `get_release`. :param str hide: List of sub-entities to elide in response. See `get_release`. :param _preload_content: if False, the urllib3.HTTPResponse object will @@ -9895,6 +9896,7 @@ class DefaultApi(object): :param str mag: :param str doaj: :param str dblp: + :param str oai: :param str expand: List of sub-entities to expand in response. See `get_release`. :param str hide: List of sub-entities to elide in response. See `get_release`. :param _return_http_data_only: response data without head status code @@ -9913,7 +9915,7 @@ class DefaultApi(object): local_var_params = locals() - all_params = ['doi', 'wikidata_qid', 'isbn13', 'pmid', 'pmcid', 'core', 'arxiv', 'jstor', 'ark', 'mag', 'doaj', 'dblp', 'expand', 'hide'] # noqa: E501 + all_params = ['doi', 'wikidata_qid', 'isbn13', 'pmid', 'pmcid', 'core', 'arxiv', 'jstor', 'ark', 'mag', 'doaj', 'dblp', 'oai', 'expand', 'hide'] # noqa: E501 all_params.append('async_req') all_params.append('_return_http_data_only') all_params.append('_preload_content') @@ -9957,6 +9959,8 @@ class DefaultApi(object): query_params.append(('doaj', local_var_params['doaj'])) # noqa: E501 if 'dblp' in local_var_params: query_params.append(('dblp', local_var_params['dblp'])) # noqa: E501 + if 'oai' in local_var_params: + query_params.append(('oai', local_var_params['oai'])) # noqa: E501 if 'expand' in local_var_params: query_params.append(('expand', local_var_params['expand'])) # noqa: E501 if 'hide' in local_var_params: diff --git a/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py b/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py index 3ac0f402..c8ca4b06 100644 --- a/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py +++ b/python_openapi_client/fatcat_openapi_client/models/release_ext_ids.py @@ -43,7 +43,8 @@ class ReleaseExtIds(object): 'ark': 'str', 'mag': 'str', 'doaj': 'str', - 'dblp': 'str' + 'dblp': 'str', + 'oai': 'str' } attribute_map = { @@ -58,10 +59,11 @@ class ReleaseExtIds(object): 'ark': 'ark', 'mag': 'mag', 'doaj': 'doaj', - 'dblp': 'dblp' + 'dblp': 'dblp', + 'oai': 'oai' } - def __init__(self, doi=None, wikidata_qid=None, isbn13=None, pmid=None, pmcid=None, core=None, arxiv=None, jstor=None, ark=None, mag=None, doaj=None, dblp=None): # noqa: E501 + def __init__(self, doi=None, wikidata_qid=None, isbn13=None, pmid=None, pmcid=None, core=None, arxiv=None, jstor=None, ark=None, mag=None, doaj=None, dblp=None, oai=None): # noqa: E501 """ReleaseExtIds - a model defined in OpenAPI""" # noqa: E501 self._doi = None @@ -76,6 +78,7 @@ class ReleaseExtIds(object): self._mag = None self._doaj = None self._dblp = None + self._oai = None self.discriminator = None if doi is not None: @@ -102,6 +105,8 @@ class ReleaseExtIds(object): self.doaj = doaj if dblp is not None: self.dblp = dblp + if oai is not None: + self.oai = oai @property def doi(self): @@ -379,6 +384,29 @@ class ReleaseExtIds(object): self._dblp = dblp + @property + def oai(self): + """Gets the oai of this ReleaseExtIds. # noqa: E501 + + OAI-PMH identifier; only used when an OAI-PMH record is the only authoritative metadata (eg, journal OAI-PMH feeds w/o DOIs) # noqa: E501 + + :return: The oai of this ReleaseExtIds. # noqa: E501 + :rtype: str + """ + return self._oai + + @oai.setter + def oai(self, oai): + """Sets the oai of this ReleaseExtIds. + + OAI-PMH identifier; only used when an OAI-PMH record is the only authoritative metadata (eg, journal OAI-PMH feeds w/o DOIs) # noqa: E501 + + :param oai: The oai of this ReleaseExtIds. # noqa: E501 + :type: str + """ + + self._oai = oai + def to_dict(self): """Returns the model properties as a dict""" result = {} -- cgit v1.2.3 From 40b5d40bed9e20e5c7a40d1741601a8317e078d8 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 12:19:38 -0800 Subject: codegen rust schema crate --- rust/fatcat-openapi/examples/client.rs | 1 + rust/fatcat-openapi/examples/server_lib/server.rs | 4 +++- rust/fatcat-openapi/src/client.rs | 5 ++++- rust/fatcat-openapi/src/lib.rs | 5 ++++- rust/fatcat-openapi/src/models.rs | 6 ++++++ rust/fatcat-openapi/src/server.rs | 2 ++ 6 files changed, 20 insertions(+), 3 deletions(-) diff --git a/rust/fatcat-openapi/examples/client.rs b/rust/fatcat-openapi/examples/client.rs index 3fb833bd..eaaf26a6 100644 --- a/rust/fatcat-openapi/examples/client.rs +++ b/rust/fatcat-openapi/examples/client.rs @@ -560,6 +560,7 @@ fn main() { Some("mag_example".to_string()), Some("doaj_example".to_string()), Some("dblp_example".to_string()), + Some("oai_example".to_string()), Some("expand_example".to_string()), Some("hide_example".to_string()), ) diff --git a/rust/fatcat-openapi/examples/server_lib/server.rs b/rust/fatcat-openapi/examples/server_lib/server.rs index 6b681c7e..56b82cc5 100644 --- a/rust/fatcat-openapi/examples/server_lib/server.rs +++ b/rust/fatcat-openapi/examples/server_lib/server.rs @@ -818,13 +818,14 @@ impl Api for Server { mag: Option, doaj: Option, dblp: Option, + oai: Option, expand: Option, hide: Option, context: &Context, ) -> Box + Send> { let context = context.clone(); println!( - "lookup_release({:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", + "lookup_release({:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}, {:?}) - X-Span-ID: {:?}", doi, wikidata_qid, isbn13, @@ -837,6 +838,7 @@ impl Api for Server { mag, doaj, dblp, + oai, expand, hide, context.x_span_id.unwrap_or(String::from("")).clone() diff --git a/rust/fatcat-openapi/src/client.rs b/rust/fatcat-openapi/src/client.rs index 45591b9a..fdb03405 100644 --- a/rust/fatcat-openapi/src/client.rs +++ b/rust/fatcat-openapi/src/client.rs @@ -5879,6 +5879,7 @@ impl Api for Client { param_mag: Option, param_doaj: Option, param_dblp: Option, + param_oai: Option, param_expand: Option, param_hide: Option, context: &Context, @@ -5896,11 +5897,12 @@ impl Api for Client { let query_mag = param_mag.map_or_else(String::new, |query| format!("mag={mag}&", mag = query.to_string())); let query_doaj = param_doaj.map_or_else(String::new, |query| format!("doaj={doaj}&", doaj = query.to_string())); let query_dblp = param_dblp.map_or_else(String::new, |query| format!("dblp={dblp}&", dblp = query.to_string())); + let query_oai = param_oai.map_or_else(String::new, |query| format!("oai={oai}&", oai = query.to_string())); let query_expand = param_expand.map_or_else(String::new, |query| format!("expand={expand}&", expand = query.to_string())); let query_hide = param_hide.map_or_else(String::new, |query| format!("hide={hide}&", hide = query.to_string())); let url = format!( - "{}/v0/release/lookup?{doi}{wikidata_qid}{isbn13}{pmid}{pmcid}{core}{arxiv}{jstor}{ark}{mag}{doaj}{dblp}{expand}{hide}", + "{}/v0/release/lookup?{doi}{wikidata_qid}{isbn13}{pmid}{pmcid}{core}{arxiv}{jstor}{ark}{mag}{doaj}{dblp}{oai}{expand}{hide}", self.base_path, doi = utf8_percent_encode(&query_doi, QUERY_ENCODE_SET), wikidata_qid = utf8_percent_encode(&query_wikidata_qid, QUERY_ENCODE_SET), @@ -5914,6 +5916,7 @@ impl Api for Client { mag = utf8_percent_encode(&query_mag, QUERY_ENCODE_SET), doaj = utf8_percent_encode(&query_doaj, QUERY_ENCODE_SET), dblp = utf8_percent_encode(&query_dblp, QUERY_ENCODE_SET), + oai = utf8_percent_encode(&query_oai, QUERY_ENCODE_SET), expand = utf8_percent_encode(&query_expand, QUERY_ENCODE_SET), hide = utf8_percent_encode(&query_hide, QUERY_ENCODE_SET) ); diff --git a/rust/fatcat-openapi/src/lib.rs b/rust/fatcat-openapi/src/lib.rs index d82b7368..4fe878e1 100644 --- a/rust/fatcat-openapi/src/lib.rs +++ b/rust/fatcat-openapi/src/lib.rs @@ -1559,6 +1559,7 @@ pub trait Api { mag: Option, doaj: Option, dblp: Option, + oai: Option, expand: Option, hide: Option, context: &Context, @@ -1812,6 +1813,7 @@ pub trait ApiNoContext { mag: Option, doaj: Option, dblp: Option, + oai: Option, expand: Option, hide: Option, ) -> Box + Send>; @@ -2216,11 +2218,12 @@ impl<'a, T: Api> ApiNoContext for ContextWrapper<'a, T> { mag: Option, doaj: Option, dblp: Option, + oai: Option, expand: Option, hide: Option, ) -> Box + Send> { self.api() - .lookup_release(doi, wikidata_qid, isbn13, pmid, pmcid, core, arxiv, jstor, ark, mag, doaj, dblp, expand, hide, &self.context()) + .lookup_release(doi, wikidata_qid, isbn13, pmid, pmcid, core, arxiv, jstor, ark, mag, doaj, dblp, oai, expand, hide, &self.context()) } fn update_release(&self, editgroup_id: String, ident: String, entity: models::ReleaseEntity) -> Box + Send> { diff --git a/rust/fatcat-openapi/src/models.rs b/rust/fatcat-openapi/src/models.rs index c539339e..965caacf 100644 --- a/rust/fatcat-openapi/src/models.rs +++ b/rust/fatcat-openapi/src/models.rs @@ -1240,6 +1240,11 @@ pub struct ReleaseExtIds { #[serde(rename = "dblp")] #[serde(skip_serializing_if = "Option::is_none")] pub dblp: Option, + + /// OAI-PMH identifier; only used when an OAI-PMH record is the only authoritative metadata (eg, journal OAI-PMH feeds w/o DOIs) + #[serde(rename = "oai")] + #[serde(skip_serializing_if = "Option::is_none")] + pub oai: Option, } impl ReleaseExtIds { @@ -1257,6 +1262,7 @@ impl ReleaseExtIds { mag: None, doaj: None, dblp: None, + oai: None, } } } diff --git a/rust/fatcat-openapi/src/server.rs b/rust/fatcat-openapi/src/server.rs index 230aea45..59e83124 100644 --- a/rust/fatcat-openapi/src/server.rs +++ b/rust/fatcat-openapi/src/server.rs @@ -8289,6 +8289,7 @@ where let param_mag = query_params.get("mag").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_doaj = query_params.get("doaj").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_dblp = query_params.get("dblp").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); + let param_oai = query_params.get("oai").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_expand = query_params.get("expand").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); let param_hide = query_params.get("hide").and_then(|list| list.first()).and_then(|x| x.parse::().ok()); @@ -8306,6 +8307,7 @@ where param_mag, param_doaj, param_dblp, + param_oai, param_expand, param_hide, context, -- cgit v1.2.3 From 7fa96bab1bb4d1a99048cf9398fd3e1c8a4bf78a Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 13:15:24 -0800 Subject: update fatcatd rust code for 'oai' external identifier --- rust/src/endpoint_handlers.rs | 150 ++++++++++++++++++++++++++++++++++++++---- rust/src/endpoints.rs | 2 + rust/src/entity_crud.rs | 10 +++ rust/src/identifiers.rs | 38 +++++++++++ 4 files changed, 189 insertions(+), 11 deletions(-) diff --git a/rust/src/endpoint_handlers.rs b/rust/src/endpoint_handlers.rs index 1b7bd0b6..91ea2393 100644 --- a/rust/src/endpoint_handlers.rs +++ b/rust/src/endpoint_handlers.rs @@ -263,6 +263,7 @@ impl Server { mag: &Option, doaj: &Option, dblp: &Option, + oai: &Option, expand_flags: ExpandFlags, hide_flags: HideFlags, ) -> Result { @@ -279,8 +280,9 @@ impl Server { mag, doaj, dblp, + oai, ) { - (Some(doi), None, None, None, None, None, None, None, None, None, None, None) => { + (Some(doi), None, None, None, None, None, None, None, None, None, None, None, None) => { // DOIs always stored lower-case; lookups are case-insensitive let doi = doi.to_lowercase(); check_doi(&doi)?; @@ -304,6 +306,7 @@ impl Server { None, None, None, + None, ) => { check_wikidata_qid(wikidata_qid)?; release_ident::table @@ -313,7 +316,21 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, Some(isbn13), None, None, None, None, None, None, None, None, None) => { + ( + None, + None, + Some(isbn13), + None, + None, + None, + None, + None, + None, + None, + None, + None, + None, + ) => { check_isbn13(isbn13)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -326,7 +343,21 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, Some(pmid), None, None, None, None, None, None, None, None) => { + ( + None, + None, + None, + Some(pmid), + None, + None, + None, + None, + None, + None, + None, + None, + None, + ) => { check_pmid(pmid)?; release_ident::table .inner_join(release_rev::table) @@ -335,7 +366,21 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, Some(pmcid), None, None, None, None, None, None, None) => { + ( + None, + None, + None, + None, + Some(pmcid), + None, + None, + None, + None, + None, + None, + None, + None, + ) => { check_pmcid(pmcid)?; release_ident::table .inner_join(release_rev::table) @@ -344,7 +389,21 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, None, Some(core), None, None, None, None, None, None) => { + ( + None, + None, + None, + None, + None, + Some(core), + None, + None, + None, + None, + None, + None, + None, + ) => { check_core_id(core)?; release_ident::table .inner_join(release_rev::table) @@ -353,7 +412,21 @@ impl Server { .filter(release_ident::redirect_id.is_null()) .first(conn)? } - (None, None, None, None, None, None, Some(arxiv), None, None, None, None, None) => { + ( + None, + None, + None, + None, + None, + None, + Some(arxiv), + None, + None, + None, + None, + None, + None, + ) => { // TODO: this allows only lookup by full, versioned arxiv identifier. Probably also // want to allow lookup by "work" style identifier? check_arxiv_id(arxiv)?; @@ -368,7 +441,21 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, Some(jstor), None, None, None, None) => { + ( + None, + None, + None, + None, + None, + None, + None, + Some(jstor), + None, + None, + None, + None, + None, + ) => { check_jstor_id(jstor)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -381,7 +468,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, Some(ark), None, None, None) => { + (None, None, None, None, None, None, None, None, Some(ark), None, None, None, None) => { check_ark_id(ark)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -394,7 +481,7 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, None, Some(mag), None, None) => { + (None, None, None, None, None, None, None, None, None, Some(mag), None, None, None) => { check_mag_id(mag)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -407,7 +494,21 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, None, None, Some(doaj), None) => { + ( + None, + None, + None, + None, + None, + None, + None, + None, + None, + None, + Some(doaj), + None, + None, + ) => { check_doaj_id(doaj)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -420,7 +521,21 @@ impl Server { .first(conn)?; (ident, rev) } - (None, None, None, None, None, None, None, None, None, None, None, Some(dblp)) => { + ( + None, + None, + None, + None, + None, + None, + None, + None, + None, + None, + None, + Some(dblp), + None, + ) => { check_dblp_id(dblp)?; let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = release_rev::table @@ -433,6 +548,19 @@ impl Server { .first(conn)?; (ident, rev) } + (None, None, None, None, None, None, None, None, None, None, None, None, Some(oai)) => { + check_oai_id(oai)?; + let (rev, ident, _extid): (ReleaseRevRow, ReleaseIdentRow, ReleaseExtidRow) = + release_rev::table + .inner_join(release_ident::table) + .inner_join(release_rev_extid::table) + .filter(release_rev_extid::extid_type.eq("oai".to_string())) + .filter(release_rev_extid::value.eq(oai)) + .filter(release_ident::is_live.eq(true)) + .filter(release_ident::redirect_id.is_null()) + .first(conn)?; + (ident, rev) + } _ => { return Err( FatcatError::MissingOrMultipleExternalId("in lookup".to_string()).into(), diff --git a/rust/src/endpoints.rs b/rust/src/endpoints.rs index 7ac0a068..0dd232c6 100644 --- a/rust/src/endpoints.rs +++ b/rust/src/endpoints.rs @@ -739,6 +739,7 @@ impl Api for Server { mag: Option, doaj: Option, dblp: Option, + oai: Option, expand: Option, hide: Option, _context: &Context, @@ -768,6 +769,7 @@ impl Api for Server { &mag, &doaj, &dblp, + &oai, expand_flags, hide_flags, ) diff --git a/rust/src/entity_crud.rs b/rust/src/entity_crud.rs index bac8c0fc..0d72788d 100644 --- a/rust/src/entity_crud.rs +++ b/rust/src/entity_crud.rs @@ -1746,6 +1746,7 @@ impl EntityCrud for ReleaseEntity { mag: None, doaj: None, dblp: None, + oai: None, }, refs: None, contribs: None, @@ -2024,6 +2025,7 @@ impl EntityCrud for ReleaseEntity { mag: None, doaj: None, dblp: None, + oai: None, }; let extid_rows: Vec = release_rev_extid::table @@ -2038,6 +2040,7 @@ impl EntityCrud for ReleaseEntity { "mag" => ext_ids.mag = Some(extid_row.value), "doaj" => ext_ids.doaj = Some(extid_row.value), "dblp" => ext_ids.dblp = Some(extid_row.value), + "oai" => ext_ids.oai = Some(extid_row.value), _ => (), } } @@ -2312,6 +2315,13 @@ impl EntityCrud for ReleaseEntity { value: extid.clone(), }); }; + if let Some(extid) = &model.ext_ids.oai { + release_extid_rows.push(ReleaseExtidRow { + release_rev: *rev_id, + extid_type: "oai".to_string(), + value: extid.clone(), + }); + }; } for (model, rev_id) in models.iter().zip(rev_ids.iter()) { diff --git a/rust/src/identifiers.rs b/rust/src/identifiers.rs index 22ffcc79..76f978f9 100644 --- a/rust/src/identifiers.rs +++ b/rust/src/identifiers.rs @@ -411,6 +411,44 @@ fn test_check_dblp_id() { assert!(check_dblp_id("").is_err()); } +pub fn check_oai_id(raw: &str) -> Result<()> { + lazy_static! { + // http://www.openarchives.org/OAI/2.0/guidelines-oai-identifier.htm + static ref RE: Regex = Regex::new(r"^oai:[a-zA-Z][a-zA-Z0-9\-]*(\.[a-zA-Z][a-zA-Z0-9\-]*)+:[a-zA-Z0-9\-_\.!~\*'\(\);/\?:@&=\+$,%]+$").unwrap(); + } + if raw.is_ascii() && RE.is_match(raw) { + Ok(()) + } else { + Err(FatcatError::MalformedChecksum( + "OAI-PMH identifier (expected, eg, 'oai:foo.org:some-local-id-54')".to_string(), + raw.to_string(), + ))? + } +} + +#[test] +fn test_check_oai_id() { + assert!(check_oai_id("journals/entcs/GoubaultM12").is_err()); + assert!(check_oai_id("10.123*").is_err()); + assert!(check_oai_id("").is_err()); + assert!(check_oai_id("something:arXiv.org:hep-th/9901001").is_err()); // bad schema + assert!(check_oai_id("oai:999:abc123").is_err()); // namespace-identifier must not start with digit + assert!(check_oai_id("oai:wibble:abc123").is_err()); // namespace-identifier must be domain name + assert!(check_oai_id("oai:wibble.org:ab cd").is_err()); // space not permitted (must be escaped as %20) + assert!(check_oai_id("oai:wibble.org:ab#cd").is_err()); // # not permitted + assert!(check_oai_id("oai:wibble.org:ab Result<()> { lazy_static! { static ref RE: Regex = Regex::new(r"^\d{4}-\d{3}[0-9X]$").unwrap(); -- cgit v1.2.3 From e935725539c1b66d8e8cb917d37aed959921418e Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 16:31:59 -0800 Subject: normal: handle langdetect of 'zh-cn' (not len=2) --- python/fatcat_tools/normal.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py index ed439225..dea6da59 100644 --- a/python/fatcat_tools/normal.py +++ b/python/fatcat_tools/normal.py @@ -361,6 +361,7 @@ def detect_text_lang(raw: str) -> Optional[str]: return None try: lang = langdetect.detect(raw) + lang = lang.split('-')[0] assert len(lang) == 2 return lang except (langdetect.lang_detect_exception.LangDetectException, TypeError): @@ -373,6 +374,8 @@ def test_detect_text_lang() -> None: assert detect_text_lang(EN_SAMPLE) == "en" JA_SAMPLE = "モーラの種類は、以下に示すように111程度存在する。ただし、研究者により数え方が少しずつ異なる。" assert detect_text_lang(JA_SAMPLE) == "ja" + ZH_SAMPLE = "随着分布式清洁能源的普及,通信技术在协调各个分布式电源的控制中显得尤为重要。在电力信息传输的过程中,不同的网络状态下表现出不同的通信特性,严重的甚至会发生信息错乱丢包等行为,这对电网的实时控制产生严重影响。为研究信息系统对电力物理系统的实时影响,搭建了电力信息物理融合仿真平台,运用RT-LAB与OPNET两款实时仿真器,通过TCP/IP进行数据交互,对微电网电压、频率的集中式恢复与分布式恢复问题展开研究。仿真结果表明,该平台能有效地反映通信网络对电网控制的影响,提供了一种可靠的未来电力信息物理融合系统研究技术。" + assert detect_text_lang(ZH_SAMPLE) == "zh" def parse_lang_name(raw: Optional[str]) -> Optional[str]: """ -- cgit v1.2.3 From 6844071983fb1c9cfc0717247e933e23dead51ca Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Thu, 19 Nov 2020 17:09:54 -0800 Subject: clean DOI: ban all non-ASCII characters I believe this is safe and matches the regex filter in rust (fatcatd). Keep hitting one-off DOIs that were passing through python check, so being more strict from here forward. --- python/fatcat_tools/normal.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py index dea6da59..aae3ac68 100644 --- a/python/fatcat_tools/normal.py +++ b/python/fatcat_tools/normal.py @@ -62,7 +62,8 @@ def clean_doi(raw): # will likely want to expand DOI_REGEX to exclude non-ASCII characters, but # for now block specific characters so we can get PubMed importer running # again. - if 'ä' in raw or 'á' in raw or '\u200e' in raw or '\u2043' in raw: + # known characters to skip: ä á \u200e \u2043 \u2012 + if not raw.isascii(): return None return raw @@ -81,6 +82,8 @@ def test_clean_doi(): assert clean_doi("10.30466/vrf.2019.98547.2350\u200e") == None assert clean_doi("10.12016/j.issn.2096⁃1456.2017.06.014") == None assert clean_doi("10.4025/diálogos.v17i2.36030") == None + assert clean_doi("10.19027/jai.10.106‒115") == None + assert clean_doi("10.15673/атбп2312-3125.17/2014.26332") == None ARXIV_ID_REGEX = re.compile(r"^(\d{4}.\d{4,5}|[a-z\-]+(\.[A-Z]{2})?/\d{7})(v\d+)?$") -- cgit v1.2.3 From 2819f21c8f2e14de67b4a3e62827deda5bcf76a0 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 11:57:52 -0800 Subject: DOAJ: handle empty identifier 'id' case --- python/fatcat_tools/importers/doaj_article.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/python/fatcat_tools/importers/doaj_article.py b/python/fatcat_tools/importers/doaj_article.py index 30007857..bbc5e969 100644 --- a/python/fatcat_tools/importers/doaj_article.py +++ b/python/fatcat_tools/importers/doaj_article.py @@ -321,6 +321,8 @@ class DoajArticleImporter(EntityImporter): pmid: Optional[str] = None pmcid: Optional[str] = None for id_obj in identifiers: + if not id_obj.get('id'): + continue if id_obj['type'].lower() == 'doi': doi = clean_doi(id_obj['id']) elif id_obj['type'].lower() == 'pmid': -- cgit v1.2.3 From 7160cf4d43983014289cda7aed076ca1a6b431be Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 13:26:12 -0800 Subject: doaj: fix update code path (getattr not __dict__) Also add missing code coverage for update path (disabled by default). --- python/fatcat_tools/importers/doaj_article.py | 7 ++- python/tests/files/example_doaj_articles.json | 2 +- python/tests/import_doaj.py | 76 +++++++++++++++++++++++---- 3 files changed, 70 insertions(+), 15 deletions(-) diff --git a/python/fatcat_tools/importers/doaj_article.py b/python/fatcat_tools/importers/doaj_article.py index bbc5e969..03752484 100644 --- a/python/fatcat_tools/importers/doaj_article.py +++ b/python/fatcat_tools/importers/doaj_article.py @@ -196,15 +196,14 @@ class DoajArticleImporter(EntityImporter): except fatcat_openapi_client.rest.ApiException as err: if err.status != 404: raise err - # doesn't exist, need to update - return True # then try other ext_id lookups if not existing: for extid_type in ('doi', 'pmid', 'pmcid'): - extid_val = re.ext_ids.__dict__[extid_type] + extid_val = getattr(re.ext_ids, extid_type) if not extid_val: continue + #print(f" lookup release type: {extid_type} val: {extid_val}") try: existing = self.api.lookup_release(**{extid_type: extid_val}) except fatcat_openapi_client.rest.ApiException as err: @@ -215,7 +214,7 @@ class DoajArticleImporter(EntityImporter): warn_str = f"unexpected DOAJ ext_id match after lookup failed doaj={re.ext_ids.doaj} ident={existing.ident}" warnings.warn(warn_str) self.counts["skip-doaj-id-mismatch"] += 1 - return None + return False break # TODO: in the future could do fuzzy match here, eg using elasticsearch diff --git a/python/tests/files/example_doaj_articles.json b/python/tests/files/example_doaj_articles.json index 2cfb7790..018a4800 100644 --- a/python/tests/files/example_doaj_articles.json +++ b/python/tests/files/example_doaj_articles.json @@ -2,4 +2,4 @@ {"last_updated":"2020-02-04T08:06:42Z","bibjson":{"identifier":[{"id":"2072-6694","type":"eissn"},{"id":"10.3390/cancers9080107","type":"doi"}],"journal":{"volume":"9","number":"8","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/journal/cancers/about"}],"issns":["2072-6694"],"publisher":"MDPI AG","language":["EN"],"title":"Cancers"},"month":"8","keywords":["ALK rearrangement, lung cancer, biology, immunohistochemistry, FISH, molecular biology."],"year":"2017","start_page":"107","subject":[{"code":"RC254-282","scheme":"LCC","term":"Neoplasms. Tumors. Oncology. Including cancer and carcinogens"}],"author":[{"affiliation":"Laboratory of Clinical and Experimental Pathology, Pasteur Hospital, 30 avenue de la voie romaine, 06001 Nice cedex 01, France","name":"Paul Hofman"}],"link":[{"content_type":"pdf","type":"fulltext","url":"https://www.mdpi.com/2072-6694/9/8/107"}],"abstract":"Patients with advanced-stage non-small cell lung carcinoma (NSCLC) harboring an ALK rearrangement, detected from a tissue sample, can benefit from targeted ALK inhibitor treatment. Several increasingly effective ALK inhibitors are now available for treatment of patients. However, despite an initial favorable response to treatment, in most cases relapse or progression occurs due to resistance mechanisms mainly caused by mutations in the tyrosine kinase domain of ALK. The detection of an ALK rearrangement is pivotal and can be done using different methods, which have variable sensitivity and specificity depending, in particular, on the quality and quantity of the patient’s sample. This review will first highlight briefly some information regarding the pathobiology of an ALK rearrangement and the epidemiology of patients harboring this genomic alteration. The different methods used to detect an ALK rearrangement as well as their advantages and disadvantages will then be examined and algorithms proposed for detection in daily routine practice.","title":"ALK in Non-Small Cell Lung Cancer (NSCLC) Pathobiology, Epidemiology, Detection from Tumor Tissue and Algorithm Diagnosis in a Daily Practice"},"admin":{"seal":true},"created_date":"2018-10-26T07:49:34Z","id":"937c7aa790e048d4ae5f53a2ad71f0dc"} {"last_updated":"2020-02-04T13:43:13Z","bibjson":{"identifier":[{"id":"1178-2013","type":"pissn"}],"end_page":"818","keywords":["bioconjugation","biosurfactant","cancer therapy","folic acid receptor","graphene quantum dots","theranostic tool"],"year":"2019","subject":[{"code":"R5-920","scheme":"LCC","term":"Medicine (General)"}],"author":[{"name":"Bansal S"},{"name":"Singh J"},{"name":"Kumari U"},{"name":"Kaur IP"},{"name":"Barnwal RP"},{"name":"Kumar R"},{"name":"Singh S"},{"name":"Singh G"},{"name":"Chatterjee M"}],"link":[{"content_type":"html","type":"fulltext","url":"https://www.dovepress.com/development-of-biosurfactant-based-graphene-quantum-dot-conjugate-as-a-peer-reviewed-article-IJN"}],"abstract":"Smriti Bansal,1 Joga Singh,2 Uma Kumari,3 Indu Pal Kaur,2 Ravi Pratap Barnwal,4 Ravinder Kumar,3 Suman Singh,5 Gurpal Singh,2 Mary Chatterjee1 1Biotechnology Engineering, University Institute of Engineering & Technology, Panjab University, Chandigarh, India; 2Department of Pharmaceutical Sciences, University Institute of Pharmaceutical Sciences, Panjab University, Chandigarh, India; 3Department of Zoology, Panjab University, Chandigarh, India; 4Department of Biophysics, Panjab University, Chandigarh, India; 5Department of Agronomics, Central Scientific Instruments Organisation, Chandigarh, India Background: Biosurfactants are amphipathic molecules of microbial origin that reduce surface and interfacial tension at gas–liquid–solid interfaces. Earlier, the biosurfactant was isolated and characterized in our laboratory from Candida parapsilosis. The property of the biosurfactant is further explored in this study by using quantum dots (QDs) as nanocarrier.Materials and methods: Graphene quantum dots (GQDs) were synthesized by bottom-up approach through pyrolysis of citric acid. GQDs were conjugated with both biosurfactant and folic acid (FA) using carbodiimide chemistry. The prepared GQD bioconjugate was studied for diagnostic and therapeutic effects against cancer cells.Results and discussion: Photoluminescence quantum yield (QY) of plain GQDs was measured as 12.8%. QY for biosurfactant conjugated GQDs and FA-biosurfactant conjugated GQDs was measured as 10.4% and 9.02%, respectively, and it was sufficient for targeting cancer cells. MTT assay showed that more than 90% of cells remained viable at concentration of 1 mg/mL, hence GQDs seemed to be non-toxic to cells. Biosurfactant conjugated GQDs caused 50% reduction in cellular viability within 24 hours. FA conjugation further increased the specificity of bioconjugated GQDs toward tumor cells, which is clearly evident from the drug internalization studies using confocal laser scanning microscopy. A higher amount of drug uptake was observed when bioconjugated GQDs were decorated with FA.Conclusion: The ability of GQD bioconjugate could be used as a theranostic tool for cancer. It is foreseen that in near future cancer can be detected and/or treated at an early stage by utilizing biosurfactant conjugated GQDs. Therefore, the proposed study would provide a stepping stone to improve the life of cancer patients. Keywords: bioconjugation, nanomedicine, nanocarrier, cancer therapy, folic acid receptor, graphene quantum dots","title":"Development of biosurfactant-based graphene quantum dot conjugate as a novel and fluorescent theranostic tool for cancer","journal":{"volume":"Volume 14","country":"GB","license":[{"open_access":true,"title":"CC BY-NC","type":"CC BY-NC","url":"https://www.dovepress.com/author_guidelines.php?content_id=695"}],"issns":["1176-9114","1178-2013"],"publisher":"Dove Medical Press","language":["EN"],"title":"International Journal of Nanomedicine"},"month":"1","start_page":"809"},"created_date":"2019-01-29T18:43:40Z","id":"e0173c80437f4fb88ec4e02e453e13b0"} {"last_updated":"2020-02-04T09:46:14Z","bibjson":{"identifier":[{"id":"1424-8220","type":"eissn"},{"id":"10.3390/s18124467","type":"doi"}],"journal":{"volume":"18","number":"12","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/journal/sensors/about"}],"issns":["1424-8220"],"publisher":"MDPI AG","language":["EN"],"title":"Sensors"},"month":"12","keywords":["multilayer sea ice temperature","low temperature","design","performance analysis"],"year":"2018","start_page":"4467","subject":[{"code":"TP1-1185","scheme":"LCC","term":"Chemical technology"}],"author":[{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Guangyu Zuo"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Yinke Dou"},{"affiliation":"College of Water Resources Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Xiaomin Chang"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Yan Chen"},{"affiliation":"College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan 030024, China","name":"Chunyan Ma"}],"link":[{"content_type":"pdf","type":"fulltext","url":"https://www.mdpi.com/1424-8220/18/12/4467"}],"abstract":"Temperature profiles of sea ice have been recorded more than a few decades. However, few high-precision temperature sensors can complete the observation of temperature profile of sea ice, especially in extreme environments. At present, the most widely used sea ice observation instruments can reach an accuracy of sea ice temperature measurement of 0.1 °C. In this study, a multilayer sea ice temperature sensor is developed with temperature measurement accuracy from −0.0047 °C to 0.0059 °C. The sensor system composition, structure of the thermistor string, and work mode are analyzed. The performance of the sensor system is evaluated from −50 °C to 30 °C. The temperature dependence of the constant current source, the amplification circuit, and the analog-to-digital converter (ADC) circuit are comprehensive tested and quantified. A temperature correction algorithm is designed to correct any deviation in the sensor system. A sea-ice thickness discrimination algorithm is proposed in charge of determining the thickness of sea ice automatically. The sensor system was field tested in Wuliangsuhai, Yellow River on 31 January 2018 and the second reservoir of Fen River, Yellow River on 30 January 2018. The integral practicality of this sensor system is identified and examined. The multilayer sea ice temperature sensor will provide good temperature results of sea ice and maintain stable performance in the low ambient temperature.","title":"Design and Performance Analysis of a Multilayer Sea Ice Temperature Sensor Used in Polar Region"},"admin":{"seal":true},"created_date":"2018-12-18T08:13:29Z","id":"152f83d12b9f477696e681684ba696e7"} -{"last_updated":"2020-06-02T23:02:32Z","bibjson":{"identifier":[{"id":"10.3390/app10113872","type":"doi"},{"id":"2076-3417","type":"eissn"}],"journal":{"volume":"10","number":"3872","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/about/openaccess"}],"issns":["2076-3417"],"publisher":"MDPI AG","language":["EN"],"title":"Applied Sciences"},"month":"06","keywords":["Smart parking systems","survey","vehicle routing problem","vehicle detection techniques","routing algorithms"],"year":"2020","start_page":"3872","subject":[{"code":"T","scheme":"LCC","term":"Technology"},{"code":"TA1-2040","scheme":"LCC","term":"Engineering (General). Civil engineering (General)"},{"code":"QH301-705.5","scheme":"LCC","term":"Biology (General)"},{"code":"QC1-999","scheme":"LCC","term":"Physics"},{"code":"QD1-999","scheme":"LCC","term":"Chemistry"}],"author":[{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Mathias Gabriel Diaz Ogás"},{"affiliation":"Institute of Informatics and Applications. University of Girona, 17003 Girona, Spain","name":"Ramon Fabregat"},{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Silvana Aciar"}],"link":[{"content_type":"text/html","type":"fulltext","url":"https://www.mdpi.com/2076-3417/10/11/3872"}],"abstract":"The large number of vehicles constantly seeking access to congested areas in cities means that finding a public parking place is often difficult and causes problems for drivers and citizens alike. In this context, strategies that guide vehicles from one point to another, looking for the most optimal path, are needed. Most contributions in the literature are routing strategies that take into account different criteria to select the optimal route required to find a parking space. This paper aims to identify the types of smart parking systems (SPS) that are available today, as well as investigate the kinds of vehicle detection techniques (VDT) they have and the algorithms or other methods they employ, in order to analyze where the development of these systems is at today. To do this, a survey of 274 publications from January 2012 to December 2019 was conducted. The survey considered four principal features: SPS types reported in the literature, the kinds of VDT used in these SPS, the algorithms or methods they implement, and the stage of development at which they are. Based on a search and extraction of results methodology, this work was able to effectively obtain the current state of the research area. In addition, the exhaustive study of the studies analyzed allowed for a discussion to be established concerning the main difficulties, as well as the gaps and open problems detected for the SPS. The results shown in this study may provide a base for future research on the subject.","title":"Survey of Smart Parking Systems"},"admin":{"seal":true},"id":"9cf511bab39445ba9745feb43d7493dd","created_date":"2020-06-03T00:02:28Z"} +{"last_updated":"2020-06-02T23:02:32Z","bibjson":{"identifier":[{"id":"10.123/abc","type":"doi"},{"id":"2076-3417","type":"eissn"}],"journal":{"volume":"10","number":"3872","country":"CH","license":[{"open_access":true,"title":"CC BY","type":"CC BY","url":"http://www.mdpi.com/about/openaccess"}],"issns":["2076-3417"],"publisher":"MDPI AG","language":["EN"],"title":"Applied Sciences"},"month":"06","keywords":["Smart parking systems","survey","vehicle routing problem","vehicle detection techniques","routing algorithms"],"year":"2020","start_page":"3872","subject":[{"code":"T","scheme":"LCC","term":"Technology"},{"code":"TA1-2040","scheme":"LCC","term":"Engineering (General). Civil engineering (General)"},{"code":"QH301-705.5","scheme":"LCC","term":"Biology (General)"},{"code":"QC1-999","scheme":"LCC","term":"Physics"},{"code":"QD1-999","scheme":"LCC","term":"Chemistry"}],"author":[{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Mathias Gabriel Diaz Ogás"},{"affiliation":"Institute of Informatics and Applications. University of Girona, 17003 Girona, Spain","name":"Ramon Fabregat"},{"affiliation":"Institute of Computer Science. Faculty of Exact, Physical and Natural Sciences. National University of San Juan, 5400 San Juan, Argentina","name":"Silvana Aciar"}],"link":[{"content_type":"text/html","type":"fulltext","url":"https://www.mdpi.com/2076-3417/10/11/3872"}],"abstract":"The large number of vehicles constantly seeking access to congested areas in cities means that finding a public parking place is often difficult and causes problems for drivers and citizens alike. In this context, strategies that guide vehicles from one point to another, looking for the most optimal path, are needed. Most contributions in the literature are routing strategies that take into account different criteria to select the optimal route required to find a parking space. This paper aims to identify the types of smart parking systems (SPS) that are available today, as well as investigate the kinds of vehicle detection techniques (VDT) they have and the algorithms or other methods they employ, in order to analyze where the development of these systems is at today. To do this, a survey of 274 publications from January 2012 to December 2019 was conducted. The survey considered four principal features: SPS types reported in the literature, the kinds of VDT used in these SPS, the algorithms or methods they implement, and the stage of development at which they are. Based on a search and extraction of results methodology, this work was able to effectively obtain the current state of the research area. In addition, the exhaustive study of the studies analyzed allowed for a discussion to be established concerning the main difficulties, as well as the gaps and open problems detected for the SPS. The results shown in this study may provide a base for future research on the subject.","title":"Survey of Smart Parking Systems"},"admin":{"seal":true},"id":"9cf511bab39445ba9745feb43d7493dd","created_date":"2020-06-03T00:02:28Z"} diff --git a/python/tests/import_doaj.py b/python/tests/import_doaj.py index bceb1343..23334219 100644 --- a/python/tests/import_doaj.py +++ b/python/tests/import_doaj.py @@ -3,12 +3,11 @@ import json import datetime import pytest +import fatcat_openapi_client from fatcat_tools.importers import DoajArticleImporter, JsonLinePusher from fatcat_tools.transforms import entity_to_dict -import fatcat_openapi_client -from fixtures import api -import json +from fixtures import * @pytest.fixture(scope="function") @@ -16,12 +15,8 @@ def doaj_importer(api): with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file: yield DoajArticleImporter(api, issn_file, bezerk_mode=True) -@pytest.fixture(scope="function") -def doaj_importer_existing(api): - with open("tests/files/ISSN-to-ISSN-L.snip.txt", "r") as issn_file: - yield DoajArticleImporter(api, issn_file, bezerk_mode=False) - def test_doaj_importer(doaj_importer): + return True # XXX last_index = doaj_importer.api.get_changelog(limit=1)[0].index with open("tests/files/example_doaj_articles.json", "r") as f: doaj_importer.bezerk_mode = True @@ -29,6 +24,8 @@ def test_doaj_importer(doaj_importer): assert counts["insert"] == 5 assert counts["exists"] == 0 assert counts["skip"] == 0 + success_changelog = doaj_importer.api.get_changelog(limit=1)[0] + assert last_index + 1 == success_changelog.index # fetch most recent editgroup change = doaj_importer.api.get_changelog_entry(index=last_index + 1) @@ -48,13 +45,72 @@ def test_doaj_importer(doaj_importer): assert counts["skip"] == 0 assert last_index == doaj_importer.api.get_changelog(limit=1)[0].index + # cleanup file entities (so other import tests work) + success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id) + eg = quick_eg(doaj_importer.api) + for release_edit in success_editgroup.edits.releases: + doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident) + doaj_importer.api.accept_editgroup(eg.editgroup_id) + +def test_doaj_importer_existing_doi(doaj_importer): + """ + One of the DOAJ test entities has a dummy DOI (10.123/abc); this test + ensures that it isn't clobbered, an then that it gets updated. + """ + with open("tests/files/example_doaj_articles.json", "r") as f: + doaj_importer.reset() + doaj_importer.bezerk_mode = False + doaj_importer.do_updates = False + counts = JsonLinePusher(doaj_importer, f).run() + print(counts) + assert counts["insert"] == 4 + assert counts["exists"] == 1 + assert counts["skip"] == 0 + success_changelog = doaj_importer.api.get_changelog(limit=1)[0] + success_editgroup = doaj_importer.api.get_editgroup(success_changelog.editgroup_id) + + with open("tests/files/example_doaj_articles.json", "r") as f: + doaj_importer.reset() + doaj_importer.bezerk_mode = False + doaj_importer.do_updates = True + counts = JsonLinePusher(doaj_importer, f).run() + print(counts) + assert counts["insert"] == 0 + assert counts["exists"] == 4 + assert counts["update"] == 1 + update_changelog = doaj_importer.api.get_changelog(limit=1)[0] + update_editgroup = doaj_importer.api.get_editgroup(update_changelog.editgroup_id) + + with open("tests/files/example_doaj_articles.json", "r") as f: + doaj_importer.reset() + doaj_importer.bezerk_mode = False + doaj_importer.do_updates = True + counts = JsonLinePusher(doaj_importer, f).run() + print(counts) + assert counts["insert"] == 0 + assert counts["exists"] == 5 + assert counts["update"] == 0 + + # cleanup file entities (so other import tests work) + eg = quick_eg(doaj_importer.api) + for release_edit in success_editgroup.edits.releases: + doaj_importer.api.delete_release(eg.editgroup_id, release_edit.ident) + for release_edit in update_editgroup.edits.releases: + print(release_edit) + doaj_importer.api.update_release( + eg.editgroup_id, + release_edit.ident, + ReleaseEntity( + revision=release_edit.prev_revision, + ext_ids=ReleaseExtIds(), + ), + ) + doaj_importer.api.accept_editgroup(eg.editgroup_id) def test_doaj_dict_parse(doaj_importer): with open("tests/files/example_doaj_articles.json", "r") as f: raw = json.loads(f.readline()) r = doaj_importer.parse_record(raw) - # ensure the API server is ok with format - JsonLinePusher(doaj_importer, [json.dumps(raw)]).run() assert r.title == "Effect of hydrogen on tensile properties and fracture behavior of PH 13-8 Mo steel" assert r.publisher == "Elsevier" -- cgit v1.2.3 From 4e0f8bd7796eaa419490c082bbf92558a39c0718 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 13:27:21 -0800 Subject: crossref+datacite: remove confusing early update bail Easy to miss that we skip updates *twice*, and with this early bailout were not updating counts correctly. --- python/fatcat_tools/importers/crossref.py | 2 -- python/fatcat_tools/importers/datacite.py | 2 -- 2 files changed, 4 deletions(-) diff --git a/python/fatcat_tools/importers/crossref.py b/python/fatcat_tools/importers/crossref.py index 71f08952..e77fa65e 100644 --- a/python/fatcat_tools/importers/crossref.py +++ b/python/fatcat_tools/importers/crossref.py @@ -487,8 +487,6 @@ class CrossrefImporter(EntityImporter): except fatcat_openapi_client.rest.ApiException as err: if err.status != 404: raise err - # doesn't exist, need to update - return True # eventually we'll want to support "updates", but for now just skip if # entity already exists diff --git a/python/fatcat_tools/importers/datacite.py b/python/fatcat_tools/importers/datacite.py index 5cdc5577..70f8db86 100644 --- a/python/fatcat_tools/importers/datacite.py +++ b/python/fatcat_tools/importers/datacite.py @@ -781,8 +781,6 @@ class DataciteImporter(EntityImporter): except fatcat_openapi_client.rest.ApiException as err: if err.status != 404: raise err - # doesn't exist, need to update - return True # eventually we'll want to support "updates", but for now just skip if # entity already exists -- cgit v1.2.3 From 0138ae0157f70edefb9670f67e3c92e861e8dd35 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 13:28:37 -0800 Subject: DOAJ: update importer README with example invocation --- python/README_import.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/python/README_import.md b/python/README_import.md index 65c08f8b..71b15eee 100644 --- a/python/README_import.md +++ b/python/README_import.md @@ -126,3 +126,10 @@ Run import in parallel: zcat /srv/fatcat/datasets/crossref-pre-1923-scholarly-works.matched.json.gz | time parallel -j12 --round-robin --pipe ./fatcat_import.py matched - --default-mime 'application/pdf' +## DOAJ + +Takes a few hours. + + export FATCAT_API_AUTH_TOKEN=... (FATCAT_AUTH_WORKER_DOAJ) + + zcat /srv/fatcat/datasets/doaj_article_data_2020-11-13_all.json.gz | pv -l | parallel -j12 --round-robin --pipe ./fatcat_import.py doaj-article --issn-map-file /srv/fatcat/datasets/ISSN-to-ISSN-L.txt - -- cgit v1.2.3 From 94ab81609d61e4d267e3a96b50f25dd5565a9cc4 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 13:29:48 -0800 Subject: langdetect: more text for 'zh' test case This is an attempt to fix spurious test failures, in which this text block was getting detected as 'kr' on occasion. Apparently there is non-determinism in the langdetect package. --- python/fatcat_tools/normal.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/fatcat_tools/normal.py b/python/fatcat_tools/normal.py index aae3ac68..a3d6bccc 100644 --- a/python/fatcat_tools/normal.py +++ b/python/fatcat_tools/normal.py @@ -377,7 +377,7 @@ def test_detect_text_lang() -> None: assert detect_text_lang(EN_SAMPLE) == "en" JA_SAMPLE = "モーラの種類は、以下に示すように111程度存在する。ただし、研究者により数え方が少しずつ異なる。" assert detect_text_lang(JA_SAMPLE) == "ja" - ZH_SAMPLE = "随着分布式清洁能源的普及,通信技术在协调各个分布式电源的控制中显得尤为重要。在电力信息传输的过程中,不同的网络状态下表现出不同的通信特性,严重的甚至会发生信息错乱丢包等行为,这对电网的实时控制产生严重影响。为研究信息系统对电力物理系统的实时影响,搭建了电力信息物理融合仿真平台,运用RT-LAB与OPNET两款实时仿真器,通过TCP/IP进行数据交互,对微电网电压、频率的集中式恢复与分布式恢复问题展开研究。仿真结果表明,该平台能有效地反映通信网络对电网控制的影响,提供了一种可靠的未来电力信息物理融合系统研究技术。" + ZH_SAMPLE = "随着分布式清洁能源的普及,通信技术在协调各个分布式电源的控制中显得尤为重要。在电力信息传输的过程中,不同的网络状态下表现出不同的通信特性,严重的甚至会发生信息错乱丢包等行为,这对电网的实时控制产生严重影响。为研究信息系统对电力物理系统的实时影响,搭建了电力信息物理融合仿真平台,运用RT-LAB与OPNET两款实时仿真器,通过TCP/IP进行数据交互,对微电网电压、频率的集中式恢复与分布式恢复问题展开研究。仿真结果表明,该平台能有效地反映通信网络对电网控制的影响,提供了一种可靠的未来电力信息物理融合系统研究技术。随着分布式清洁能源的普及,通信技术在协调各个分布式电源的控制中显得尤为重要。在电力信息传输的过程中,不同的网络状态下表现出不同的通信特性,严重的甚至会发生信息错乱丢包等行为,这对电网的实时控制产生严重影响。为研究信息系统对电力物理系统的实时影响,搭建了电力信息物理融合仿真平台,运用RT-LAB与OPNET两款实时仿真器,通过TCP/IP进行数据交互,对微电网电压、频率的集中式恢复与分布式恢复问题展开研究。仿真结果表明,该平台能有效地反映通信网络对电网控制的影响,提供了一种可靠的未来电力信息物理融合系统研究技术。" assert detect_text_lang(ZH_SAMPLE) == "zh" def parse_lang_name(raw: Optional[str]) -> Optional[str]: -- cgit v1.2.3 From db4e3898de5859f257606058379ceed784b51f86 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 13:33:18 -0800 Subject: DOAJ: remove accidentally commited 'skip' of a test --- python/tests/import_doaj.py | 1 - 1 file changed, 1 deletion(-) diff --git a/python/tests/import_doaj.py b/python/tests/import_doaj.py index 23334219..d69aebd7 100644 --- a/python/tests/import_doaj.py +++ b/python/tests/import_doaj.py @@ -16,7 +16,6 @@ def doaj_importer(api): yield DoajArticleImporter(api, issn_file, bezerk_mode=True) def test_doaj_importer(doaj_importer): - return True # XXX last_index = doaj_importer.api.get_changelog(limit=1)[0].index with open("tests/files/example_doaj_articles.json", "r") as f: doaj_importer.bezerk_mode = True -- cgit v1.2.3 From 1fca5a9822944d0646d2dcba6cf54f27a0ffe5c0 Mon Sep 17 00:00:00 2001 From: Bryan Newbold Date: Fri, 20 Nov 2020 18:39:53 -0800 Subject: cargo: update sentry to fix memory initialization issue Older sentry had an unsafe memory initialization error, which wasn't caught by older compilers. Rust 1.48 catches the problem at runtime and raises a panic. This meant that new builds (eg, on QA machine after update) were panic-ing. Newest versions of sentry have modern dependencies, which breaks our crufty old 'iron' dependency tree. Work-around is to only partially update (v0.12 to v0.15). This is a fairly frustrating situation. I'm hopeful that when we update to a different web framework and openapi generator 5.0 (not yet released), many of these dependency issues will be resolved, but i'm not certain. I did notice that if we entirely remove Sentry, which has not really been used much (only a small handful of issues reported over several years), we might be able to resolve openssl dependency issues. --- rust/Cargo.lock | 604 +++++++++++++++++++++++++++++++------------------------- rust/Cargo.toml | 2 +- 2 files changed, 332 insertions(+), 274 deletions(-) diff --git a/rust/Cargo.lock b/rust/Cargo.lock index 6bd42699..fc260a6f 100644 --- a/rust/Cargo.lock +++ b/rust/Cargo.lock @@ -1,10 +1,19 @@ # This file is automatically @generated by Cargo. # It is not intended for manual editing. [[package]] -name = "adler32" -version = "1.0.3" +name = "addr2line" +version = "0.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e522997b529f05601e05166c07ed17789691f562762c7f3b987263d2dedee5c" +checksum = "7c0929d69e78dd9bf5408269919fcbcaeb2e35e5d43e5815517cdc6a8e11a423" +dependencies = [ + "gimli", +] + +[[package]] +name = "adler" +version = "0.2.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ee2a4ec343196209d6594e19543ae87a39f96d5534d7174822a3ad825dd6ed7e" [[package]] name = "aho-corasick" @@ -12,7 +21,16 @@ version = "0.6.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e9a933f4e58658d7b12defcf96dc5c720f20832deebe3e0a19efd3b6aaeeb9e" dependencies = [ - "memchr 2.1.3", + "memchr 2.3.4", +] + +[[package]] +name = "aho-corasick" +version = "0.7.15" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7404febffaa47dac81aa44dba71523c9d069b1bdc50a77db41195149e17f68e5" +dependencies = [ + "memchr 2.3.4", ] [[package]] @@ -63,27 +81,23 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a6d640bee2da49f60a4068a7fae53acde8982514ab7bae8b8cea9e88cbcfd799" [[package]] -name = "backtrace" -version = "0.3.13" +name = "autocfg" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b5b493b66e03090ebc4343eb02f94ff944e0cbc9ac6571491d170ba026741eb5" -dependencies = [ - "autocfg", - "backtrace-sys", - "cfg-if", - "libc", - "rustc-demangle", - "winapi 0.3.6", -] +checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a" [[package]] -name = "backtrace-sys" -version = "0.1.28" +name = "backtrace" +version = "0.3.55" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "797c830ac25ccc92a7f8a7b9862bde440715531514594a6154e3d4a54dd769b6" +checksum = "ef5140344c85b01f9bbb4d4b7288a8aa4b3287ccef913a14bcc78a1063623598" dependencies = [ - "cc", + "addr2line", + "cfg-if 1.0.0", "libc", + "miniz_oxide", + "object", + "rustc-demangle", ] [[package]] @@ -129,7 +143,7 @@ dependencies = [ "iron 0.6.0", "persistent", "plugin", - "serde 1.0.85", + "serde 1.0.117", "serde_json 1.0.38", ] @@ -169,16 +183,16 @@ dependencies = [ ] [[package]] -name = "cc" -version = "1.0.28" +name = "cfg-if" +version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bb4a8b715cb4597106ea87c7c84b2f1d452c7492033765df7f32651e66fcf749" +checksum = "082bb9b28e00d3c9d39cc03e64ce4cea0f1bb9b3fde493f0cbc008472d22bdf4" [[package]] name = "cfg-if" -version = "0.1.6" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "082bb9b28e00d3c9d39cc03e64ce4cea0f1bb9b3fde493f0cbc008472d22bdf4" +checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "chrono" @@ -198,7 +212,7 @@ checksum = "45912881121cb26fad7c38c17ba7daa18764771836b34fab7d3fbd93ed633878" dependencies = [ "num-integer", "num-traits 0.2.6", - "serde 1.0.85", + "serde 1.0.117", "time", ] @@ -242,28 +256,40 @@ dependencies = [ ] [[package]] -name = "core-foundation" -version = "0.6.4" +name = "cookie" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "25b9e03f145fd4f2bf705e07b900cd41fc636598fe5dc452fd0db1441c3f496d" +checksum = "888604f00b3db336d2af898ec3c1d5d0ddf5e6d462220f2ededc33a87ac4bbd5" dependencies = [ - "core-foundation-sys", - "libc", + "time", + "url 1.7.2", ] [[package]] -name = "core-foundation-sys" -version = "0.6.2" +name = "cookie_store" +version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e7ca8a5221364ef15ce201e8ed2f609fc312682a8f4e0e3d4aa5879764e0fa3b" +checksum = "46750b3f362965f197996c4448e4a0935e791bf7d6631bfce9ee0af3d24c919c" +dependencies = [ + "cookie", + "failure", + "idna 0.1.5", + "log 0.4.6", + "publicsuffix", + "serde 1.0.117", + "serde_json 1.0.38", + "time", + "try_from", + "url 1.7.2", +] [[package]] name = "crc32fast" -version = "1.1.2" +version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e91d5240c6975ef33aeb5f148f35275c25eda8e8a5f95abe421978b05b8bf192" +checksum = "81156fece84ab6a9f2afdb109ce3ae577e42b1228441eded99bd77f627953b1a" dependencies = [ - "cfg-if", + "cfg-if 1.0.0", ] [[package]] @@ -284,12 +310,12 @@ version = "0.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ad4c7ea749d9fb09e23c5cb17e3b70650860553a0e2744e38446b1803bf7db94" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", "crossbeam-channel 0.3.8", "crossbeam-deque", "crossbeam-epoch 0.7.1", "crossbeam-utils 0.6.5", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "num_cpus", "parking_lot 0.7.1", ] @@ -334,9 +360,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2449aaa4ec7ef96e5fb24db16024b935df718e9ae1cec0a1e68feeca2efca7b8" dependencies = [ "arrayvec", - "cfg-if", + "cfg-if 0.1.6", "crossbeam-utils 0.6.5", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "memoffset", "scopeguard", ] @@ -348,9 +374,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "04c9e3102cc2d69cd681412141b390abd55a362afc1540965dad0ad4d34280b4" dependencies = [ "arrayvec", - "cfg-if", + "cfg-if 0.1.6", "crossbeam-utils 0.6.5", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "memoffset", "scopeguard", ] @@ -367,8 +393,8 @@ version = "0.6.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f8306fcef4a7b563b76b7dd949ca48f52bc1141aa067d2ea09565f3e2652aa5c" dependencies = [ - "cfg-if", - "lazy_static 1.2.0", + "cfg-if 0.1.6", + "lazy_static 1.4.0", ] [[package]] @@ -379,13 +405,13 @@ checksum = "f4f47ca1860a761136924ddd2422ba77b2ea54fe8cc75b9040804a0d9d32ad97" [[package]] name = "debugid" -version = "0.3.1" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eeb088ba9178f59386641547f9c22fd1d658e2d130f02359bb562759f8f992fc" +checksum = "088c9627adec1e494ff9dea77377f1e69893023d631254a0ec68b16ee20be3e9" dependencies = [ - "lazy_static 1.2.0", - "regex 1.1.0", - "serde 1.0.85", + "lazy_static 1.4.0", + "regex 1.4.2", + "serde 1.0.117", "uuid 0.7.2", ] @@ -411,7 +437,7 @@ version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "62a27666098617d52c487a41f70de23d44a1dc1f3aa5877ceba2790fb1f1cab4" dependencies = [ - "proc-macro2", + "proc-macro2 0.4.27", "quote 0.6.11", "syn 0.15.26", ] @@ -511,7 +537,7 @@ version = "0.8.15" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fd251508d65030820f3a4317af2248180db337fdb25d89967956242580277813" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", ] [[package]] @@ -523,7 +549,7 @@ dependencies = [ "atty", "humantime", "log 0.4.6", - "regex 1.1.0", + "regex 1.4.2", "termcolor", ] @@ -546,6 +572,15 @@ dependencies = [ "backtrace", ] +[[package]] +name = "error-chain" +version = "0.12.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2d2f06b9cac1506ece98fe3231e3cc9c4410ec3d5b1f24ae1c8946f0742cdefc" +dependencies = [ + "version_check 0.9.2", +] + [[package]] name = "failure" version = "0.1.5" @@ -562,7 +597,7 @@ version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ea1063915fd7ef4309e222a5a07cf9c319fb9c7836b1f89b85458672dbb127e1" dependencies = [ - "proc-macro2", + "proc-macro2 0.4.27", "quote 0.6.11", "syn 0.15.26", "synstructure", @@ -588,15 +623,15 @@ dependencies = [ "iron 0.6.0", "iron-slog", "iron-test", - "lazy_static 1.2.0", - "log 0.3.9", + "lazy_static 1.4.0", + "log 0.4.6", "macaroon", "num_cpus", - "rand 0.3.23", - "regex 1.1.0", + "rand 0.6.5", + "regex 1.4.2", "sentry", - "serde 1.0.85", - "serde_derive 1.0.85", + "serde 1.0.117", + "serde_derive 1.0.117", "serde_ignored", "serde_json 1.0.38", "sha1", @@ -616,7 +651,7 @@ dependencies = [ "bodyparser", "chrono 0.4.6", "clap", - "error-chain", + "error-chain 0.11.0", "futures", "hyper 0.10.15", "iron 0.6.0", @@ -624,8 +659,8 @@ dependencies = [ "log 0.3.9", "multipart", "router", - "serde 1.0.85", - "serde_derive 1.0.85", + "serde 1.0.117", + "serde_derive 1.0.117", "serde_ignored", "serde_json 1.0.38", "swagger", @@ -634,6 +669,18 @@ dependencies = [ "uuid 0.5.1", ] +[[package]] +name = "flate2" +version = "1.0.19" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7411863d55df97a419aa64cb4d2f167103ea9d767e2c54a1868b7ac3f6b47129" +dependencies = [ + "cfg-if 1.0.0", + "crc32fast", + "libc", + "miniz_oxide", +] + [[package]] name = "fnv" version = "1.0.6" @@ -641,20 +688,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2fad85553e09a6f881f739c29f0b00b0f01357c743266d478b68951ce23285f3" [[package]] -name = "foreign-types" -version = "0.3.2" +name = "form_urlencoded" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f6f339eb8adc052cd2ca78910fda869aefa38d22d5cb648e6485e4d3fc06f3b1" +checksum = "ece68d15c92e84fa4f19d3780f1294e5ca82a78a6d515f1efaabcc144688be00" dependencies = [ - "foreign-types-shared", + "matches", + "percent-encoding 2.1.0", ] -[[package]] -name = "foreign-types-shared" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "00b0228411908ca8685dba7fc2cdd70ec9990a6e753e89b6ac91a84c40fbaf4b" - [[package]] name = "fuchsia-cprng" version = "0.1.0" @@ -693,6 +735,12 @@ dependencies = [ "num_cpus", ] +[[package]] +name = "gimli" +version = "0.23.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f6503fe142514ca4799d4c26297c4248239fe8838d827db6bd6065c6ed29a6ce" + [[package]] name = "h2" version = "0.1.16" @@ -790,23 +838,21 @@ dependencies = [ ] [[package]] -name = "hyper-tls" -version = "0.3.2" +name = "idna" +version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3a800d6aa50af4b5850b2b0f659625ce9504df908e9733b635720483be26174f" +checksum = "38f09e0f0b1fb55fdee1f17470ad800da77af5186a1a76c026b679358b7e844e" dependencies = [ - "bytes", - "futures", - "hyper 0.12.23", - "native-tls", - "tokio-io", + "matches", + "unicode-bidi", + "unicode-normalization", ] [[package]] name = "idna" -version = "0.1.5" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38f09e0f0b1fb55fdee1f17470ad800da77af5186a1a76c026b679358b7e844e" +checksum = "02e2673c30ee86b5b96a9cb52ad15718aa1f966f5ab9ad54a8b95d5ca33120a9" dependencies = [ "matches", "unicode-bidi", @@ -815,11 +861,12 @@ dependencies = [ [[package]] name = "im" -version = "12.3.0" +version = "12.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0627d417829c1d763d602687634869f254fc79f7e22dea6c824dab993db857e4" +checksum = "de38d1511a0ce7677538acb1e31b5df605147c458e061b2cdb89858afb1cd182" dependencies = [ "rustc_version", + "sized-chunks", "typenum", ] @@ -903,7 +950,7 @@ version = "0.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e31a8281fc93ec9693494da65fbf28c0c2aa60a2eaec25dc58e2f31952e95edc" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", "libc", "redox_syscall", "winapi 0.3.6", @@ -945,9 +992,9 @@ checksum = "76f033c7ad61445c5b347c7382dd1237847eb1bce590fe50365dcb33d546be73" [[package]] name = "lazy_static" -version = "1.2.0" +version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a374c89b9db55895453a74c1e38861d9deec0b01b405a82516e9d5de4820dea1" +checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "lazycell" @@ -957,20 +1004,9 @@ checksum = "b294d6fa9ee409a054354afc4352b0b9ef7ca222c69b8812cbea9e7d2bf3783f" [[package]] name = "libc" -version = "0.2.48" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e962c7641008ac010fa60a7dfdc1712449f29c44ef2d4702394aea943ee75047" - -[[package]] -name = "libflate" -version = "0.1.19" +version = "0.2.80" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bff3ac7d6f23730d3b533c35ed75eef638167634476a499feef16c428d74b57b" -dependencies = [ - "adler32", - "byteorder", - "crc32fast", -] +checksum = "4d58d1b70b004888f764dfbf6a26a3b0342a1632d33968e4a179d8011c760614" [[package]] name = "libsodium-sys" @@ -1007,7 +1043,7 @@ version = "0.4.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c84ec4b527950aa83a329754b01dbe3f58361d1c5efacd1f6d68c494d08a17c6" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", ] [[package]] @@ -1040,13 +1076,9 @@ dependencies = [ [[package]] name = "memchr" -version = "2.1.3" +version = "2.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e1dd4eaac298c32ce07eb6ed9242eda7d82955b9170b7d6db59b2e02cc63fcb8" -dependencies = [ - "cfg-if", - "libc", -] +checksum = "0ee1c47aaa256ecabcaea351eae4a9b01ef39ed810004e298d2511ed284b1525" [[package]] name = "memoffset" @@ -1089,7 +1121,7 @@ version = "0.3.13" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3e27ca21f40a310bd06d9031785f4801710d566c184a6e15bad4f1d9b65f9425" dependencies = [ - "unicase 2.2.0", + "unicase 2.6.0", ] [[package]] @@ -1106,14 +1138,22 @@ dependencies = [ [[package]] name = "mime_guess" -version = "2.0.0-alpha.6" +version = "2.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "30de2e4613efcba1ec63d8133f344076952090c122992a903359be5a4f99c3ed" +checksum = "2684d4c2e97d99848d30b324b00c8fcc7e5c897b7cbb5819b09e7c90e8baf212" dependencies = [ "mime 0.3.13", - "phf", - "phf_codegen", - "unicase 1.4.2", + "unicase 2.6.0", +] + +[[package]] +name = "miniz_oxide" +version = "0.4.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0f2d26ec3309788e423cfbf68ad1800f061638098d76a83681af979dc4eda19d" +dependencies = [ + "adler", + "autocfg 1.0.1", ] [[package]] @@ -1173,31 +1213,13 @@ dependencies = [ "twoway", ] -[[package]] -name = "native-tls" -version = "0.2.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4b2df1a4c22fd44a62147fd8f13dd0f95c9d8ca7b2610299b2a2f9cf8964274e" -dependencies = [ - "lazy_static 1.2.0", - "libc", - "log 0.4.6", - "openssl", - "openssl-probe", - "openssl-sys", - "schannel", - "security-framework", - "security-framework-sys", - "tempfile", -] - [[package]] name = "net2" version = "0.2.33" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "42550d9fb7b6684a6d404d9fa7250c2eb2646df731d1c06afc06dcee9e1bcf88" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", "libc", "winapi 0.3.6", ] @@ -1263,37 +1285,10 @@ dependencies = [ ] [[package]] -name = "openssl" -version = "0.10.24" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8152bb5a9b5b721538462336e3bef9a539f892715e5037fda0f984577311af15" -dependencies = [ - "bitflags", - "cfg-if", - "foreign-types", - "lazy_static 1.2.0", - "libc", - "openssl-sys", -] - -[[package]] -name = "openssl-probe" -version = "0.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77af24da69f9d9341038eba93a073b1fdaaa1b788221b00a69bce9e762cb32de" - -[[package]] -name = "openssl-sys" -version = "0.9.49" +name = "object" +version = "0.22.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f4fad9e54bd23bd4cbbe48fdc08a1b8091707ac869ef8508edea2fec77dcc884" -dependencies = [ - "autocfg", - "cc", - "libc", - "pkg-config", - "vcpkg", -] +checksum = "8d3b63360ec3cb337817c2dbd47ab4a0f170d285d8e5a2064600f3def1402397" [[package]] name = "owning_ref" @@ -1356,6 +1351,12 @@ version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "31010dd2e1ac33d5b46a5b413495239882813e0369f8ed8a5e266f173602f831" +[[package]] +name = "percent-encoding" +version = "2.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d4fd5641d01c8f18a23da7b6fe29298ff4b55afcccdf78973b24cf3175fee32e" + [[package]] name = "persistent" version = "0.4.0" @@ -1438,6 +1439,28 @@ dependencies = [ "unicode-xid 0.1.0", ] +[[package]] +name = "proc-macro2" +version = "1.0.24" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1e0704ee1a7e00d7bb417d0770ea303c1bccbabf0ef1667dae92b5967f5f8a71" +dependencies = [ + "unicode-xid 0.2.1", +] + +[[package]] +name = "publicsuffix" +version = "1.5.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3bbaa49075179162b49acac1c6aa45fb4dafb5f13cf6794276d77bc7fd95757b" +dependencies = [ + "error-chain 0.12.4", + "idna 0.2.0", + "lazy_static 1.4.0", + "regex 1.4.2", + "url 2.2.0", +] + [[package]] name = "quick-error" version = "1.2.2" @@ -1456,7 +1479,16 @@ version = "0.6.11" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cdd8e04bd9c52e0342b406469d494fcb033be4bdbe5c606016defbb1681411e1" dependencies = [ - "proc-macro2", + "proc-macro2 0.4.27", +] + +[[package]] +name = "quote" +version = "1.0.7" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "aa563d17ecb180e500da1cfd2b028310ac758de548efdd203e18f283af693f37" +dependencies = [ + "proc-macro2 1.0.24", ] [[package]] @@ -1512,7 +1544,7 @@ version = "0.6.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6d71dacdc3c88c1fde3885a3be3fbab9f35724e6ce99467f7d9c5026132184ca" dependencies = [ - "autocfg", + "autocfg 0.1.2", "libc", "rand_chacha", "rand_core 0.4.0", @@ -1531,7 +1563,7 @@ version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "556d3a1ca6600bfcbab7c7c91ccb085ac7fbbcd70e008a98742e7847f4f7bcef" dependencies = [ - "autocfg", + "autocfg 0.1.2", "rand_core 0.3.1", ] @@ -1642,24 +1674,23 @@ version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9329abc99e39129fcceabd24cf5d85b4671ef7c29c50e972bc5afe32438ec384" dependencies = [ - "aho-corasick", - "memchr 2.1.3", + "aho-corasick 0.6.9", + "memchr 2.3.4", "regex-syntax 0.5.6", - "thread_local", + "thread_local 0.3.6", "utf8-ranges", ] [[package]] name = "regex" -version = "1.1.0" +version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37e7cbbd370869ce2e8dff25c7018702d10b21a20ef7135316f8daecd6c25b7f" +checksum = "38cf2c13ed4745de91a5eb834e11c00bcc3709e773173b2ce4c56c9fbde04b9c" dependencies = [ - "aho-corasick", - "memchr 2.1.3", - "regex-syntax 0.6.5", - "thread_local", - "utf8-ranges", + "aho-corasick 0.7.15", + "memchr 2.3.4", + "regex-syntax 0.6.21", + "thread_local 1.0.1", ] [[package]] @@ -1673,12 +1704,9 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.6.5" +version = "0.6.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8c2f35eedad5295fdf00a63d7d4b238135723f92b434ec06774dad15c7ab0861" -dependencies = [ - "ucd-util", -] +checksum = "3b181ba2dcf07aaccad5448e8ead58db5b742cf85dfe035e2227f137a539a189" [[package]] name = "remove_dir_all" @@ -1691,25 +1719,26 @@ dependencies = [ [[package]] name = "reqwest" -version = "0.9.9" +version = "0.9.24" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09d6e187a58d923ee132fcda141c94e716bcfe301c2ea2bef5c81536e0085376" +checksum = "f88643aea3c1343c804950d7bf983bd2067f5ab59db6d613a08e05572f2714ab" dependencies = [ "base64 0.10.1", "bytes", + "cookie", + "cookie_store", "encoding_rs", + "flate2", "futures", "http", "hyper 0.12.23", - "hyper-tls", - "libflate", "log 0.4.6", "mime 0.3.13", - "mime_guess 2.0.0-alpha.6", - "native-tls", - "serde 1.0.85", + "mime_guess 2.0.3", + "serde 1.0.117", "serde_json 1.0.38", "serde_urlencoded", + "time", "tokio", "tokio-executor", "tokio-io", @@ -1717,6 +1746,7 @@ dependencies = [ "tokio-timer", "url 1.7.2", "uuid 0.7.2", + "winreg", ] [[package]] @@ -1775,16 +1805,6 @@ version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8dca453248a96cb0749e36ccdfe2b0b4e54a61bfef89fb97ec621eb8e0a93dd9" -[[package]] -name = "schannel" -version = "0.1.14" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0e1a231dc10abf6749cfa5d7767f25888d484201accbd919b66ab5413c502d56" -dependencies = [ - "lazy_static 1.2.0", - "winapi 0.3.6", -] - [[package]] name = "scheduled-thread-pool" version = "0.2.0" @@ -1800,27 +1820,6 @@ version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "94258f53601af11e6a49f722422f6e3425c52b06245a5cf9bc09908b174f5e27" -[[package]] -name = "security-framework" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eee63d0f4a9ec776eeb30e220f0bc1e092c3ad744b2a379e3993070364d3adc2" -dependencies = [ - "core-foundation", - "core-foundation-sys", - "libc", - "security-framework-sys", -] - -[[package]] -name = "security-framework-sys" -version = "0.3.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9636f8989cbf61385ae4824b98c1aaa54c994d7d8b41f11c601ed799f0549a56" -dependencies = [ - "core-foundation-sys", -] - [[package]] name = "semver" version = "0.9.0" @@ -1838,18 +1837,18 @@ checksum = "388a1df253eca08550bef6c72392cfe7c30914bf41df5269b68cbd6ff8f570a3" [[package]] name = "sentry" -version = "0.12.1" +version = "0.15.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6f68b67973fb8e8cc09a85168e2b4242be4255cca776b7ae25cfec5eb3a9d708" +checksum = "95129dccb5a12b47b030697dac994e59fb63fe4e8294c1dc4c78ab7b54b49c22" dependencies = [ "backtrace", "failure", "httpdate", "im", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "log 0.4.6", - "rand 0.5.6", - "regex 1.1.0", + "rand 0.6.5", + "regex 1.4.2", "reqwest", "rustc_version", "sentry-types", @@ -1858,16 +1857,14 @@ dependencies = [ [[package]] name = "sentry-types" -version = "0.8.1" +version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1108bf605cb7f136bea4d30d24c9e255ab16ea610a74e004c02d673a2247f6cf" +checksum = "b23e3d9c8c6e4a1523f24df6753c4088bfe16c44a73c8881c1d23c70f28ae280" dependencies = [ "chrono 0.4.6", "debugid", "failure", - "failure_derive", - "serde 1.0.85", - "serde_derive 1.0.85", + "serde 1.0.117", "serde_json 1.0.38", "url 1.7.2", "url_serde", @@ -1888,9 +1885,12 @@ checksum = "34b623917345a631dc9608d5194cc206b3fe6c3554cd1c75b937e55e285254af" [[package]] name = "serde" -version = "1.0.85" +version = "1.0.117" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "534b8b91a95e0f71bca3ed5824752d558da048d4248c91af873b63bd60519752" +checksum = "b88fa983de7720629c9387e9f517353ed404164b1e482c970a90c1a4aaf7dc1a" +dependencies = [ + "serde_derive 1.0.117", +] [[package]] name = "serde_codegen_internals" @@ -1914,13 +1914,13 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.85" +version = "1.0.117" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a915306b0f1ac5607797697148c223bedeaa36bcc2e28a01441cd638cc6567b4" +checksum = "cbd1ae72adb44aab48f325a02444a5fc079349a8d804c1fc922aed3f7454c74e" dependencies = [ - "proc-macro2", - "quote 0.6.11", - "syn 0.15.26", + "proc-macro2 1.0.24", + "quote 1.0.7", + "syn 1.0.48", ] [[package]] @@ -1929,7 +1929,7 @@ version = "0.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "190e9765dcedb56be63b6e0993a006c7e3b071a016a304736e4a315dc01fb142" dependencies = [ - "serde 1.0.85", + "serde 1.0.117", ] [[package]] @@ -1952,7 +1952,7 @@ checksum = "27dce848e7467aa0e2fcaf0a413641499c0b745452aaca1194d24dedde9e13c9" dependencies = [ "itoa 0.4.3", "ryu", - "serde 1.0.85", + "serde 1.0.117", ] [[package]] @@ -1963,7 +1963,7 @@ checksum = "d48f9f99cd749a2de71d29da5f948de7f2764cc5a9d7f3c97e3514d4ee6eabf2" dependencies = [ "dtoa", "itoa 0.4.3", - "serde 1.0.85", + "serde 1.0.117", "url 1.7.2", ] @@ -1979,6 +1979,15 @@ version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0b8de496cf83d4ed58b6be86c3a275b8602f6ffe98d3024a869e124147a9a3ac" +[[package]] +name = "sized-chunks" +version = "0.1.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9d3e7f23bad2d6694e0f46f5e470ec27eb07b8f3e8b309a4b0dc17501928b9f2" +dependencies = [ + "typenum", +] + [[package]] name = "slab" version = "0.4.2" @@ -1999,7 +2008,7 @@ checksum = "e544d16c6b230d84c866662fe55e31aacfca6ae71e6fc49ae9a311cb379bfc2f" dependencies = [ "slog", "take_mut", - "thread_local", + "thread_local 0.3.6", ] [[package]] @@ -2009,7 +2018,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "60c04b4726fa04595ccf2c2dad7bcd15474242c4c5e109a8a376e8a2c9b1539a" dependencies = [ "crossbeam 0.6.0", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "slog", ] @@ -2035,7 +2044,7 @@ dependencies = [ "isatty", "slog", "term", - "thread_local", + "thread_local 0.3.6", ] [[package]] @@ -2085,8 +2094,8 @@ dependencies = [ "base64 0.5.2", "hyper 0.10.15", "iron 0.5.1", - "serde 1.0.85", - "serde_derive 1.0.85", + "serde 1.0.117", + "serde_derive 1.0.117", "serde_json 1.0.38", ] @@ -2107,11 +2116,22 @@ version = "0.15.26" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f92e629aa1d9c827b2bb8297046c1ccffc57c99b947a680d3ccff1f136a3bee9" dependencies = [ - "proc-macro2", + "proc-macro2 0.4.27", "quote 0.6.11", "unicode-xid 0.1.0", ] +[[package]] +name = "syn" +version = "1.0.48" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cc371affeffc477f42a221a1e4297aedcea33d47d19b61455588bd9d8f6b19ac" +dependencies = [ + "proc-macro2 1.0.24", + "quote 1.0.7", + "unicode-xid 0.2.1", +] + [[package]] name = "synom" version = "0.11.3" @@ -2127,7 +2147,7 @@ version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "73687139bf99285483c96ac0add482c3776528beac1d97d444f6e91f203a2015" dependencies = [ - "proc-macro2", + "proc-macro2 0.4.27", "quote 0.6.11", "syn 0.15.26", "unicode-xid 0.1.0", @@ -2149,20 +2169,6 @@ dependencies = [ "remove_dir_all", ] -[[package]] -name = "tempfile" -version = "3.0.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e91405c14320e5c79b3d148e1c86f40749a36e490642202a31689cb1a3452b2" -dependencies = [ - "cfg-if", - "libc", - "rand 0.6.5", - "redox_syscall", - "remove_dir_all", - "winapi 0.3.6", -] - [[package]] name = "term" version = "0.5.1" @@ -2208,7 +2214,16 @@ version = "0.3.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c6b53e329000edc2b34dbe8545fd20e55a333362d0a321909685a19bd28c3f1b" dependencies = [ - "lazy_static 1.2.0", + "lazy_static 1.4.0", +] + +[[package]] +name = "thread_local" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d40c6d1b69745a6ec6fb1ca717914848da4b44ae29d9b3080cbee91d72a69b14" +dependencies = [ + "lazy_static 1.4.0", ] [[package]] @@ -2250,6 +2265,7 @@ dependencies = [ "tokio-executor", "tokio-io", "tokio-reactor", + "tokio-tcp", "tokio-threadpool", "tokio-timer", ] @@ -2293,7 +2309,7 @@ checksum = "afbcdb0f0d2a1e4c440af82d7bbf0bf91a8a8c0575bcd20c05d15be7e9d3a02f" dependencies = [ "crossbeam-utils 0.6.5", "futures", - "lazy_static 1.2.0", + "lazy_static 1.4.0", "log 0.4.6", "mio", "num_cpus", @@ -2359,13 +2375,22 @@ version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e604eb7b43c06650e854be16a2a03155743d3752dd1c943f6829e26b7a36e382" +[[package]] +name = "try_from" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "283d3b89e1368717881a9d51dad843cc435380d8109c9e47d38780a324698d8b" +dependencies = [ + "cfg-if 0.1.6", +] + [[package]] name = "twoway" version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "59b11b2b5241ba34be09c3cc85a36e56e48f9888862e19cedf23336d35316ed1" dependencies = [ - "memchr 2.1.3", + "memchr 2.3.4", ] [[package]] @@ -2401,16 +2426,16 @@ version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7f4765f83163b74f957c797ad9253caf97f103fb064d3999aea9568d09fc8a33" dependencies = [ - "version_check", + "version_check 0.1.5", ] [[package]] name = "unicase" -version = "2.2.0" +version = "2.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9d3218ea14b4edcaccfa0df0a64a3792a2c32cc706f1b336e48867f9d3147f90" +checksum = "50f37be617794602aabbeee0be4f259dc1778fabe05e2d67ee8f79326d5cb4f6" dependencies = [ - "version_check", + "version_check 0.9.2", ] [[package]] @@ -2449,6 +2474,12 @@ version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fc72304796d0818e357ead4e000d19c9c174ab23dc11093ac919054d20a6a7fc" +[[package]] +name = "unicode-xid" +version = "0.2.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f7fe0bb3479651439c9112f72b6c505038574c9fbb575ed1bf3b797fa39dd564" + [[package]] name = "unreachable" version = "1.0.0" @@ -2484,9 +2515,21 @@ version = "1.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "dd4e7c0d531266369519a4aa4f399d748bd37043b00bde1e4ff1f60a120b355a" dependencies = [ - "idna", + "idna 0.1.5", "matches", - "percent-encoding", + "percent-encoding 1.0.1", +] + +[[package]] +name = "url" +version = "2.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5909f2b0817350449ed73e8bcd81c8c3c8d9a7a5d8acba4b27db277f1868976e" +dependencies = [ + "form_urlencoded", + "idna 0.2.0", + "matches", + "percent-encoding 2.1.0", ] [[package]] @@ -2495,7 +2538,7 @@ version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "74e7d099f1ee52f823d4bdd60c93c3602043c728f5db3b97bdb548467f7bddea" dependencies = [ - "serde 1.0.85", + "serde 1.0.117", "url 1.7.2", ] @@ -2534,7 +2577,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bcc7e3b898aa6f6c08e5295b6c89258d1331e9ac578cc992fb818759951bdc22" dependencies = [ "rand 0.3.23", - "serde 1.0.85", + "serde 1.0.117", ] [[package]] @@ -2543,7 +2586,7 @@ version = "0.6.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e1436e58182935dcd9ce0add9ea0b558e8a87befe01c1a301e6020aeb0876363" dependencies = [ - "cfg-if", + "cfg-if 0.1.6", ] [[package]] @@ -2553,7 +2596,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0238db0c5b605dd1cf51de0f21766f97fba2645897024461d6a00c036819a768" dependencies = [ "rand 0.6.5", - "serde 1.0.85", + "serde 1.0.117", ] [[package]] @@ -2574,6 +2617,12 @@ version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "914b1a6776c4c929a602fafd8bc742e06365d4bcbe48c30f9cca5824f70dc9dd" +[[package]] +name = "version_check" +version = "0.9.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b5a972e5669d67ba988ce3dc826706fb0a8b01471c088cb0b6110b805cc36aed" + [[package]] name = "void" version = "1.0.2" @@ -2644,6 +2693,15 @@ dependencies = [ "winapi-util", ] +[[package]] +name = "winreg" +version = "0.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "daf67b95d0b1bf421c4f11048d63110ca3719977169eec86396b614c8942b6e0" +dependencies = [ + "winapi 0.3.6", +] + [[package]] name = "ws2_32-sys" version = "0.2.1" diff --git a/rust/Cargo.toml b/rust/Cargo.toml index 0290492a..3eda4df9 100644 --- a/rust/Cargo.toml +++ b/rust/Cargo.toml @@ -44,7 +44,7 @@ serde_json = "1.0" serde = "1.0" serde_derive = "1.0" serde_ignored = "0.0.4" -sentry = { version = "^0.12", default-features = false, features = ["with_client_implementation", "with_backtrace", "with_panic", "with_log", "with_rust_info", "with_failure"] } +sentry = { version = "0.15", default-features = false, features = ["with_client_implementation", "with_backtrace", "with_panic", "with_log", "with_rust_info", "with_failure", "with_default_transport" ] } cadence = "^0.16" # Command-line tools -- cgit v1.2.3