From 502f3d43184a5bfb47418e3d2d4fa3bfcb022258 Mon Sep 17 00:00:00 2001
From: Bryan Newbold <bnewbold@robocracy.org>
Date: Tue, 19 Jul 2022 12:52:16 -0700
Subject: 2021 ORCID metadata import notes

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 extra/bulk_edits/2022-07-12_orcid.md | 64 ++++++++++++++++++++++++++++++++++++
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 create mode 100644 extra/bulk_edits/2022-07-12_orcid.md

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+
+Annual ORCID import, using 2021 public data file. Didn't do this last year, so
+a catch-up, and will need to do another update later in 2022 (presumably in
+November/December).
+
+Not sure how many records this year. Current count on the orcid.org website is
+over 14 million ORCIDs, in July 2022.
+
+Files download from:
+
+- <https://info.orcid.org/orcids-2021-public-data-file-is-now-available>
+- <https://orcid.figshare.com/articles/dataset/ORCID_Public_Data_File_2021/16750535>
+- <https://archive.org/details/orcid-dump-2021>
+
+## Prep
+
+    ia upload orcid-dump-2021 -m collection:ia_biblio_metadata ORCID_2021_10_* orcid-logo.png
+
+    wget https://github.com/ORCID/orcid-conversion-lib/raw/master/target/orcid-conversion-lib-3.0.7-full.jar
+
+    java -jar orcid-conversion-lib-3.0.7-full.jar --tarball -i ORCID_2021_10_summaries.tar.gz -v v3_0 -o ORCID_2021_10_summaries_json.tar.gz
+
+    tar xvf ORCID_2021_10_summaries_json.tar.gz
+
+    fd .json ORCID_2021_10_summaries/ | parallel cat {} | jq . -c | pv -l | gzip > ORCID_2021_10_summaries.json.gz
+    # 12.6M 27:59:25 [ 125 /s]
+
+    zcat ORCID_2021_10_summaries.json.gz | shuf -n10000 | gzip > ORCID_2021_10_summaries.sample_10k.json.gz
+
+    ia upload orcid-dump-2021 ORCID_2021_10_summaries.json.gz ORCID_2021_10_summaries.sample_10k.json.gz
+
+## Import
+
+Fetch to prod machine:
+
+    wget https://archive.org/download/orcid-dump-2021/ORCID_2021_10_summaries.json.gz
+    wget https://archive.org/download/orcid-dump-2021/ORCID_2021_10_summaries.sample_10k.json.gz
+
+Sample:
+
+    export FATCAT_AUTH_WORKER_ORCID=[...]
+    zcat /srv/fatcat/datasets/ORCID_2021_10_summaries.sample_10k.json.gz | ./fatcat_import.py orcid -
+    # in 2020: Counter({'total': 10000, 'exists': 7356, 'insert': 2465, 'skip': 179, 'update': 0})
+    # this time: Counter({'total': 10000, 'exists': 7577, 'insert': 2191, 'skip': 232, 'update': 0})
+
+Bulk import:
+
+    export FATCAT_AUTH_WORKER_ORCID=[...]
+    time zcat /srv/fatcat/datasets/ORCID_2021_10_summaries.json.gz | pv -l | parallel -j8 --round-robin --pipe ./fatcat_import.py orcid -
+    12.6M 1:24:04 [2.51k/s]
+    Counter({'total': 1574111, 'exists': 1185437, 'insert': 347039, 'skip': 41635, 'update': 0})
+    Counter({'total': 1583157, 'exists': 1193341, 'insert': 348187, 'skip': 41629, 'update': 0})
+    Counter({'total': 1584441, 'exists': 1193385, 'insert': 349424, 'skip': 41632, 'update': 0})
+    Counter({'total': 1575971, 'exists': 1187270, 'insert': 347190, 'skip': 41511, 'update': 0})
+    Counter({'total': 1577323, 'exists': 1188892, 'insert': 346759, 'skip': 41672, 'update': 0})
+    Counter({'total': 1586719, 'exists': 1195610, 'insert': 349115, 'skip': 41994, 'update': 0})
+    Counter({'total': 1578484, 'exists': 1189423, 'insert': 347276, 'skip': 41785, 'update': 0})
+    Counter({'total': 1578728, 'exists': 1190316, 'insert': 346445, 'skip': 41967, 'update': 0})
+
+    real    84m5.297s
+    user    436m26.428s
+    sys     41m36.959s
+
+Roughly 2.7 million new ORCIDs, great!
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