Commit message (Collapse) | Author | Age | Files | Lines | |
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* | ftfy 'fix_entities' argument has been renamed | Bryan Newbold | 2021-11-02 | 1 | -4/+4 |
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* | hacks to work around new pylint false positives | Bryan Newbold | 2021-11-02 | 2 | -11/+18 |
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* | cleanup imports after fatcat_tools.transforms change | Bryan Newbold | 2021-11-02 | 7 | -34/+76 |
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* | re-fmt all the fatcat_tools __init__ files for readability | Bryan Newbold | 2021-11-02 | 5 | -30/+62 |
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* | remove 'import *' from fatcat_tools (for transforms) | Bryan Newbold | 2021-11-02 | 1 | -2/+2 |
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* | python makefile: tooling config updates | Bryan Newbold | 2021-11-02 | 1 | -12/+13 |
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* | add pyproject.toml with isort configuration | Bryan Newbold | 2021-11-02 | 1 | -0/+3 |
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* | pytest: more deprecation warning ignores | Bryan Newbold | 2021-11-02 | 1 | -0/+2 |
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* | update flake8 configuration | Bryan Newbold | 2021-11-02 | 1 | -9/+15 |
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* | pipenv: update lockfile | Bryan Newbold | 2021-11-02 | 1 | -404/+728 |
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* | pipenv: update ftfy to 6.x | Bryan Newbold | 2021-11-02 | 1 | -1/+1 |
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* | pipenv: add sentry-sdk (to make future raven removal easier) | Bryan Newbold | 2021-11-02 | 1 | -0/+1 |
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* | pipenv: pin elasticsearch client to prevent UnsupportedProductError | Bryan Newbold | 2021-11-02 | 1 | -1/+3 |
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* | pipenv: additional dev tools (black, types, isort, mypy) | Bryan Newbold | 2021-11-02 | 1 | -0/+11 |
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* | small python tweaks for annotations, imports | Bryan Newbold | 2021-11-02 | 3 | -3/+7 |
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* | try some type annotations | Bryan Newbold | 2021-11-02 | 4 | -70/+79 |
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* | reviewer: add annotations required by mypy | Bryan Newbold | 2021-11-02 | 1 | -2/+3 |
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* | temporary hack around filesets.manifest order instability | Bryan Newbold | 2021-11-02 | 1 | -3/+4 |
| | | | | | | May need some change in fatcatd or schema? This isn't a new issue, that part of schema has been around for a long time, just getting detected now with these tests. | ||||
* | fix missing variable in fileset ingest | Bryan Newbold | 2021-11-02 | 1 | -2/+1 |
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* | web: improve git version generation | Bryan Newbold | 2021-11-02 | 1 | -1/+1 |
| | | | | | | This shouldn't change behavior on `master` branch, but in some cases (unsigned / no-message tags), should display better short version names in the footer. | ||||
* | Merge branch 'bnewbold-import-fileset' | Bryan Newbold | 2021-11-02 | 9 | -4/+507 |
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| * | WIP: more fileset ingest | Bryan Newbold | 2021-10-18 | 1 | -13/+21 |
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| * | python: gitignore more | Bryan Newbold | 2021-10-15 | 1 | -0/+2 |
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| * | WIP: rel fixes | Bryan Newbold | 2021-10-14 | 1 | -6/+6 |
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| * | fileset ingest small tweaks | Bryan Newbold | 2021-10-14 | 1 | -21/+36 |
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| * | initial implementation of fileset ingest importers | Bryan Newbold | 2021-10-14 | 3 | -3/+298 |
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| * | ingest: handle datasets, components, other ingest types | Bryan Newbold | 2021-10-14 | 1 | -1/+15 |
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| * | generic fileset importer class, with test coverage | Bryan Newbold | 2021-10-14 | 6 | -0/+169 |
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* | | Merge branch 'bnewbold-match-get' | Bryan Newbold | 2021-11-02 | 4 | -9/+60 |
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| * | | match: fix access_options in return | Bryan Newbold | 2021-10-18 | 1 | -3/+7 |
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| * | | access: populate thumbnail_url for PDFs | Bryan Newbold | 2021-10-18 | 1 | -3/+9 |
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| * | | add GET w/ query params to reference match endpoint (and JSON version) | Bryan Newbold | 2021-10-18 | 3 | -6/+47 |
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* / | pubmed: switch default http site to retrieve update files | Martin Czygan | 2021-10-15 | 1 | -2/+4 |
|/ | | | | | | | Proxy started to throw: "dial tcp: lookup ftp.ncbi.nlm.nih.gov on [::1]:53: read udp [::1]:45178->[::1]:53: read: connection refused" NIH has a http version on it's own, try to use that. | ||||
* | web: minor typo correction | Bryan Newbold | 2021-10-13 | 1 | -1/+1 |
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* | web: editor username /u/<username> helper | Bryan Newbold | 2021-10-13 | 2 | -0/+16 |
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* | web: container lookup and display features | Bryan Newbold | 2021-10-13 | 3 | -7/+13 |
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* | python: additional test coverage for v0.4 changes | Bryan Newbold | 2021-10-13 | 2 | -2/+19 |
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* | dblp import: basic support for handles as identifiers | Bryan Newbold | 2021-10-13 | 1 | -1/+5 |
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* | python: normalization/validation support for handle identifiers (hdl) | Bryan Newbold | 2021-10-13 | 1 | -0/+33 |
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* | dblp import: fix typos in identifier parsing | Bryan Newbold | 2021-10-13 | 1 | -2/+1 |
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* | python: partial importer utilization of new schema changes | Bryan Newbold | 2021-10-13 | 3 | -6/+18 |
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* | python: test coverage of rust schema changes | Bryan Newbold | 2021-10-13 | 4 | -2/+59 |
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* | python: implement ES schema changes | Bryan Newbold | 2021-10-13 | 1 | -4/+17 |
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* | web: implement new schema changes | Bryan Newbold | 2021-10-13 | 6 | -11/+45 |
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* | Merge branch 'bnewbold-ingest-tweaks' into 'master' | bnewbold | 2021-10-02 | 4 | -39/+139 |
|\ | | | | | | | | | ingest importer behavior tweaks See merge request webgroup/fatcat!120 | ||||
| * | kafka import: optional 'force-flush' mode for some importers | Bryan Newbold | 2021-10-01 | 2 | -0/+16 |
| | | | | | | | | Behavior and motivation described in the kafka json import comment. | ||||
| * | new SPN web (html) importer | Bryan Newbold | 2021-10-01 | 3 | -27/+111 |
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| * | ingest importer behavior tweaks | Bryan Newbold | 2021-10-01 | 1 | -8/+8 |
| | | | | | | | | | | - change order of 'want()' checks, so that result counts are clearer - don't require GROBID success for file imports with SPN | ||||
| * | importer common: more verbose logging (with counts) | Bryan Newbold | 2021-10-01 | 1 | -4/+4 |
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* | | datacite: skip empty abstracts | Martin Czygan | 2021-10-01 | 4 | -2/+95 |
|/ | | | | | Do not add abstracts where `clean` results in the empty string - this violates a constraint: `either abstract_sha1 or content is required` |