| Commit message (Collapse) | Author | Age | Files | Lines | ||
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| * | fixes for newer ref index | Bryan Newbold | 2021-07-23 | 2 | -50/+11 | |
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| * | web: inbound/outbound refs as links (temporarily); change URL names | Bryan Newbold | 2021-07-23 | 3 | -3/+7 | |
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| * | web: initial implementation of fuzzy citation parsing and matching tool | Bryan Newbold | 2021-07-23 | 3 | -0/+173 | |
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| * | references: refactor to point to access_options transform; comment out CSL ↵ | Bryan Newbold | 2021-07-23 | 1 | -57/+8 | |
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| * | partial access options transform for releases | Bryan Newbold | 2021-07-23 | 1 | -0/+58 | |
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| * | web: template macro to display release entry summary | Bryan Newbold | 2021-07-23 | 1 | -0/+52 | |
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| * | first iteration of basic citation inbound/outbound views | Bryan Newbold | 2021-07-23 | 3 | -1/+146 | |
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| * | initial inbound/outbound reference query helpers | Bryan Newbold | 2021-07-23 | 1 | -0/+450 | |
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| * | pubmed: update docs | Martin Czygan | 2021-07-17 | 1 | -2/+3 | |
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| * | pubmed: do not fail when accessing missing file | Martin Czygan | 2021-07-17 | 1 | -2/+8 | |
| | | | | | | | | after a sync gap (e.g. 06/07 2021) harvester wanted to fetch a file, that was not on the server (any more) - do not fail in this case we'll need to backfill missing records via full data dump | |||||
| * | pubmed: reconnect on error | Martin Czygan | 2021-07-16 | 1 | -4/+30 | |
| | | | | | | | | | | ftp retrieval would run but fail with EOFError on /pubmed/updatefiles/pubmed21n1328_stats.html - not able to find the root cause; using a fresh client, the exact same file would work just fine. So when we retry, we reconnect on failure. Refs: sentry #91102. | |||||
| * | web: fix flask/werkzeug encoding for mediawiki oauth | Bryan Newbold | 2021-07-13 | 1 | -1/+4 | |
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| * | web: fix missing ext_ids default for deleted entity view | Bryan Newbold | 2021-07-13 | 1 | -1/+1 | |
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| * | web: fix 'file' entity edit form links | Bryan Newbold | 2021-07-02 | 1 | -1/+1 | |
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| * | web: missing trailing parens | Bryan Newbold | 2021-07-02 | 1 | -1/+1 | |
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| * | web: PMCID external link improvement | Bryan Newbold | 2021-07-02 | 2 | -2/+2 | |
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| * | Merge branch 'bnewbold-more-doi-lower' into 'master' | Martin Czygan | 2021-07-02 | 3 | -3/+8 | |
| |\ | | | | | | | | | more consistent and defensive lower-casing of DOIs See merge request webgroup/fatcat!109 | |||||
| | * | more consistent and defensive lower-casing of DOIs | Bryan Newbold | 2021-06-23 | 3 | -3/+8 | |
| | | | | | | | | | | | | | | | After noticing more upper/lower ambiguity in production. In particular, we have some old ingest requests in sandcrawler DB, which get re-submitted/re-tried, which have capitalized DOIs in the link source id field. | |||||
| * | | tests: small citeproc style changes (to match Pipfile.lock update) | Bryan Newbold | 2021-06-23 | 2 | -3/+4 | |
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| * | | pipenv: regenerate lock file | Bryan Newbold | 2021-06-23 | 1 | -26/+68 | |
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| * | | pipenv: add pydantic; add surt; narrow dynaconf | Bryan Newbold | 2021-06-23 | 1 | -1/+3 | |
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| * | datacite: more careful title string access; fixes sentry #88350 | Martin Czygan | 2021-06-11 | 4 | -2/+97 | |
| | | | | | | Caused by a partial "title entry without title" coming *first* (e.g. just holding, e.g. a language, like: {'lang': 'da'} | |||||
| * | clean_doi() should lower-case returned DOI | Bryan Newbold | 2021-06-07 | 1 | -1/+4 | |
| | | | | | | | | | | | Code in a number of places (including Pubmed importer) assumed that this was already lower-casing DOIs, resulting in some broken metadata getting created. See also: https://github.com/internetarchive/fatcat/issues/83 This is just the first step of mitigation. | |||||
| * | web: fix DOAJ article links (remove trailing slash) | Bryan Newbold | 2021-06-04 | 1 | -1/+1 | |
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| * | dblp tests: skip redundant seek(0) | Bryan Newbold | 2021-06-03 | 1 | -6/+1 | |
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| * | ingest: swap ingest and file checks, to result in clearer stats/counts of ↵ | Bryan Newbold | 2021-06-03 | 1 | -2/+2 | |
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| * | ingest: don't accept mag and s2 URLs | Bryan Newbold | 2021-06-03 | 1 | -4/+4 | |
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| * | bump fuzzycat dependency to 0.1.21 | Bryan Newbold | 2021-06-02 | 2 | -20/+18 | |
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| * | web: fix spacing for doaj/dblp identifiers in SERP | Bryan Newbold | 2021-05-31 | 1 | -1/+1 | |
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| * | ingest: don't 'track_total_hits' for ES 7.x count() | Bryan Newbold | 2021-05-31 | 1 | -1/+1 | |
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| * | web: bugfix dblp vs. doaj display logic | Bryan Newbold | 2021-05-31 | 1 | -1/+1 | |
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| * | update fuzzycat to 0.1.20 | Bryan Newbold | 2021-05-31 | 2 | -31/+94 | |
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| * | makefile: add pylint -E invocation to 'make lint', to match CI | Bryan Newbold | 2021-05-25 | 1 | -0/+1 | |
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| * | skip pylint on 'assigning-non-slot' warnings in Flask 2.0 | Bryan Newbold | 2021-05-25 | 1 | -2/+2 | |
| | | | | | | | | | | | | | | | The 'permanent' field is still valid to set to a boolean in Flask 2.0; not sure why pylint is unhappy in CI (causing test failures). Don't see any problem running test suite locally. Flask API docs: https://flask.palletsprojects.com/en/2.0.x/api/?highlight=permanent#flask.session.permanent And code (recent master branch): https://github.com/pallets/flask/blob/4240ace59710d86c478111affd4ad6fb4c8cad9e/src/flask/sessions.py#L20 | |||||
| * | changelog worker: fix file/fileset typo, caught by lint | Bryan Newbold | 2021-05-25 | 1 | -1/+1 | |
| | | | | | | This would have been resulting in some releases not getting re-indexed into search. | |||||
| * | small python lint fixes (no behavior change) | Bryan Newbold | 2021-05-25 | 5 | -6/+4 | |
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| * | bump Flask to 2.x; other deps upgraded automatically | Bryan Newbold | 2021-05-21 | 2 | -152/+167 | |
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| * | ingest: add per-container ingest type overrides | Bryan Newbold | 2021-05-21 | 2 | -1/+23 | |
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| * | fix arabesque sqlite3 examples to have 14-digit timestamps | Bryan Newbold | 2021-05-21 | 1 | -0/+0 | |
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| * | arabesque importer: ensure full 14-digit timestamps | Bryan Newbold | 2021-05-21 | 1 | -1/+3 | |
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| * | Andrew W. Mellon Foundation | Bryan Newbold | 2021-05-18 | 2 | -3/+3 | |
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| * | Merge branch 'bnewbold-pipenv-cleanup' into 'master' | bnewbold | 2021-04-23 | 2 | -327/+277 | |
| |\ | | | | | | | | | pipenv cleanup See merge request webgroup/fatcat!104 | |||||
| | * | pipenv: re-lock project | Bryan Newbold | 2021-04-19 | 1 | -301/+253 | |
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| | * | pipenv: constrain most package versions to at least major | Bryan Newbold | 2021-04-19 | 1 | -24/+24 | |
| | | | | | | | | | | | | | | | | | | | Don't have a complete policy with this change, just locking things down a bit more so small package additions and updates don't end up upgrading some small dependency to a major new backwards-incompatible version. Also, correct bs4 -> beautifulsoup4 (bs4 is the import name, not the package name) | |||||
| | * | pipenv: remove unused pg-view and pykafka libraries | Bryan Newbold | 2021-04-19 | 1 | -2/+0 | |
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| * | | web: fix edit form style guide links | Bryan Newbold | 2021-04-20 | 2 | -4/+4 | |
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| * | transforms: fix 'display_ame' typo | Bryan Newbold | 2021-04-19 | 1 | -2/+2 | |
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| * | web: expand release creators in more situations | Bryan Newbold | 2021-04-19 | 2 | -2/+2 | |
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| * | fix public API links | Bryan Newbold | 2021-04-15 | 1 | -2/+2 | |
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| * | fix 'colected' typos | Bryan Newbold | 2021-04-13 | 1 | -1/+1 | |
| | | | | | Thanks for the catch martin | |||||
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