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* add 'lxml' mode for large XML file import, and multi-tagsBryan Newbold2020-12-173-19/+31
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* fix sloppy is_preserved ES transfom test failureBryan Newbold2020-12-171-1/+1
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* add dblp as an ingest source and identifierBryan Newbold2020-12-171-1/+2
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* ingest: allow doaj ingest responsesBryan Newbold2020-12-171-1/+2
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* bug fix: is_preserved should always be boolBryan Newbold2020-12-171-2/+2
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* Merge branch 'bnewbold-doaj-fuzzy' into 'master'bnewbold2020-12-187-267/+544
|\ | | | | | | | | DOAJ import fuzzy match filter See merge request webgroup/fatcat!92
| * update fuzzy helper to pass 'reason' through to import codeBryan Newbold2020-12-172-5/+5
| | | | | | | | | | The motivation for this change is to enable passing the 'reason' through to edit extra metadata, in cases where we merge or cluster releases.
| * pipenv: bump fuzzycat to 0.1.9Bryan Newbold2020-12-172-5/+5
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| * add fuzzy match filtering to DOAJ importerBryan Newbold2020-12-162-4/+23
| | | | | | | | | | | | | | | | | | | | | | In this default configuration, any entities with a fuzzy match (even "ambiguous") will be skipped at import time, to prevent creating duplicates. This is conservative towards not creating new/duplicate entities. In the future, as we get more confidence in fuzzy match/verification, we can start to ignore AMBIGUOUS, handle EXACT as same release, and merge STRONG (and WEAK?) matches under the same work entity.
| * add fuzzy matching helper to importer base classBryan Newbold2020-12-163-2/+147
| | | | | | | | Using fuzzycat. Add basic test coverage.
| * pipenv: add fuzzycat dependencyBryan Newbold2020-12-162-261/+374
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* | entity update worker: treat fileset and webcapture updates like file updatesBryan Newbold2020-12-161-3/+25
| | | | | | | | | | | | | | | | | | When webcapture or fileset entities are updated, then the release entities associated with them also need to be updated (and work entities, recursively). A TODO is to handle the case where a release_id is *removed* as well as *added*, and reprocess the releases in that case as well.
* | fix indentationBryan Newbold2020-12-161-2/+2
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* | have release elasticsearch transform count webcaptures and filesets towards ↵Bryan Newbold2020-12-161-26/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | preservation These are simple/partial changes to have webcaptures and filesets show up in 'preservation', 'in_ia', and 'in_web' ES schema flags. A longer-term TODO is to update the ES schema to have more granular analytic flags. Also includes a small generalization refactor for URL object parsing into preservation status, shared across file+fileset+webcapture entity types (all have similar URL objects with url+rel fields).
* | improve release elasticsearch transform test coverageBryan Newbold2020-12-163-11/+86
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* | small release_to_elasticsearch refactorsBryan Newbold2020-12-161-7/+12
| | | | | | | | | | | | | | These should have almost no change in behavior, but improve code quality. The one behavior change is counting ftp URLs as "in_web"
* | refactor release_to_elasticsearch transformBryan Newbold2020-12-161-131/+148
|/ | | | | | | | | | | | This method was huge an monolithic. This commit splits out the content and container specific sections into helper functions to make it more managable. This involved refactoring to make many flags ("is_*" and "in_*") part of the output dict through the entire code path, allowing simple update() calls on the dict. Noting that in the future should refactor to use a type-annotated class for the elasticsearch output object. Perhaps something auto-generated from the ES schema itself (JSON files).
* html ingest: small fixes to try_update() code pathBryan Newbold2020-12-151-5/+5
| | | | | Don't currently have test coverage for most try_update() code; run the inserts manually in testing.
* HACK: squash intermitent failure of detect_text_lang() testBryan Newbold2020-12-111-1/+2
| | | | | This is an open bug; it is important that tests pass on master branch however.
* DOAJ: remove accidentally commited 'skip' of a testBryan Newbold2020-11-201-1/+0
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* langdetect: more text for 'zh' test caseBryan Newbold2020-11-201-1/+1
| | | | | | This is an attempt to fix spurious test failures, in which this text block was getting detected as 'kr' on occasion. Apparently there is non-determinism in the langdetect package.
* DOAJ: update importer README with example invocationBryan Newbold2020-11-201-0/+7
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* crossref+datacite: remove confusing early update bailBryan Newbold2020-11-202-4/+0
| | | | | Easy to miss that we skip updates *twice*, and with this early bailout were not updating counts correctly.
* doaj: fix update code path (getattr not __dict__)Bryan Newbold2020-11-203-15/+70
| | | | Also add missing code coverage for update path (disabled by default).
* DOAJ: handle empty identifier 'id' caseBryan Newbold2020-11-201-0/+2
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* clean DOI: ban all non-ASCII charactersBryan Newbold2020-11-191-1/+4
| | | | | | | I believe this is safe and matches the regex filter in rust (fatcatd). Keep hitting one-off DOIs that were passing through python check, so being more strict from here forward.
* normal: handle langdetect of 'zh-cn' (not len=2)Bryan Newbold2020-11-191-0/+3
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* tweak DOAJ importer class args and default for do_updatesBryan Newbold2020-11-191-2/+2
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* show DOAJ (and dblp) identifiers in release viewBryan Newbold2020-11-191-1/+7
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* if a release has DOAJ article id, count as OABryan Newbold2020-11-191-0/+3
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* implement remainder of DOAJ article importerBryan Newbold2020-11-193-68/+168
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* handle more non-ASCII DOI casesBryan Newbold2020-11-191-1/+3
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* more python normalizers, and move from importer commonBryan Newbold2020-11-192-154/+326
| | | | | | | | | | | | Moved several normalizer helpers out of fatcat_tools.importers.common to fatcat_tools.normal. Copied language name and country name parser helpers from chocula repository (built on existing pycountry helper library). Have not gone through and refactored other importers to point to these helpers yet; that should be a separate PR when this branch is merged. Current changes are backwards compatible via re-imports.
* initial implementation of DOAJ importerBryan Newbold2020-11-194-0/+387
| | | | Several things to finish implementing and polish.
* html ingest: actual xhtml mimetypeBryan Newbold2020-11-161-2/+2
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* ingest tool: support for setting ingest typeBryan Newbold2020-11-062-6/+10
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* html ingest: remaining implementationBryan Newbold2020-11-061-22/+19
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* ingest: fix XML ingest test fileBryan Newbold2020-11-051-1/+1
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* ingest: progress on HTML ingestBryan Newbold2020-11-053-16/+74
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* ingest: initial 'web' worker implementationBryan Newbold2020-11-053-67/+301
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* refactor: white/black -> allow/blockBryan Newbold2020-11-051-4/+4
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* ingest: whitelist -> allowlistBryan Newbold2020-11-052-6/+6
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* ingest: tests for basic XML ingestBryan Newbold2020-11-052-0/+18
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* ingest: basic checks for ingest_typeBryan Newbold2020-11-053-4/+36
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* normalizer: filter out a specific non-ASCII character in DOIBryan Newbold2020-11-041-1/+3
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* entity updates: don't ingest JSTOR DOI prefixesBryan Newbold2020-10-231-0/+2
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* entity updater: new work update feed (ident and changelog metadata only)Bryan Newbold2020-10-162-2/+26
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* container coverage: add keeper link and KBART holdings listBryan Newbold2020-10-131-0/+11
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* release view: remove abiguous OA status indicatorBryan Newbold2020-10-131-4/+0
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* container view: fix non-OA empty boxBryan Newbold2020-10-131-3/+3
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