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* refs: start the most basic/minimal web refs test coverage ('integration' level)Bryan Newbold2021-07-274-0/+1094
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* refs: revert fatcat-pubmed -> pubmed truncationBryan Newbold2021-07-271-4/+1
| | | | This was just going to be confusing
* refs: lint fixesBryan Newbold2021-07-272-2/+3
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* refs: several small improvements to web UIBryan Newbold2021-07-275-35/+71
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* refs: slightly better match form (will change)Bryan Newbold2021-07-271-42/+46
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* refs: show up to 8 authors in summary tablesBryan Newbold2021-07-271-4/+4
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* refs: support for wikipedia outbound refs, and display in tablesBryan Newbold2021-07-274-8/+69
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* refs: fix offset/limit bugBryan Newbold2021-07-271-1/+1
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* refs: generalize web endpoints; JSON content negotiation; openlibrary ↵Bryan Newbold2021-07-234-41/+166
| | | | inbound view; etc
* refs: change mind about URL structure againBryan Newbold2021-07-231-2/+2
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* web: refactor refs table into separate refs_macros fileBryan Newbold2021-07-233-74/+127
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* refs: small refactors/tweaksBryan Newbold2021-07-231-11/+17
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* remove unused imports (lint)Bryan Newbold2021-07-233-8/+4
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* web: always log upstream errors (may be redundant)Bryan Newbold2021-07-231-0/+2
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* pylint: skip pydantic import check (dynamic/extensions)Bryan Newbold2021-07-232-8/+4
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* refs: refactor web paths; enrich refs as generic; remove old refs linkBryan Newbold2021-07-234-66/+52
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* refs fetch: add some hacks; sort hitsBryan Newbold2021-07-231-6/+16
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* release view: improve biblio metadata display in central columnBryan Newbold2021-07-231-13/+14
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* match UI: improve form layoutBryan Newbold2021-07-231-13/+16
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* improvements to fuzzy refs viewBryan Newbold2021-07-233-47/+75
| | | | | | | | - fixes to release summary macro - show tab counts correctly by re-using generic entity get helper - table styling; 'prev' link - openlibrary access links - parse-and-match button for unmatched+unstructured refs
* fixes for newer ref indexBryan Newbold2021-07-232-50/+11
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* web: inbound/outbound refs as links (temporarily); change URL namesBryan Newbold2021-07-233-3/+7
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* web: initial implementation of fuzzy citation parsing and matching toolBryan Newbold2021-07-233-0/+173
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* references: refactor to point to access_options transform; comment out CSL ↵Bryan Newbold2021-07-231-57/+8
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* partial access options transform for releasesBryan Newbold2021-07-231-0/+58
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* web: template macro to display release entry summaryBryan Newbold2021-07-231-0/+52
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* first iteration of basic citation inbound/outbound viewsBryan Newbold2021-07-233-1/+146
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* initial inbound/outbound reference query helpersBryan Newbold2021-07-231-0/+450
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* pubmed: update docsMartin Czygan2021-07-171-2/+3
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* pubmed: do not fail when accessing missing fileMartin Czygan2021-07-171-2/+8
| | | | | | | after a sync gap (e.g. 06/07 2021) harvester wanted to fetch a file, that was not on the server (any more) - do not fail in this case we'll need to backfill missing records via full data dump
* pubmed: reconnect on errorMartin Czygan2021-07-161-4/+30
| | | | | | | | | ftp retrieval would run but fail with EOFError on /pubmed/updatefiles/pubmed21n1328_stats.html - not able to find the root cause; using a fresh client, the exact same file would work just fine. So when we retry, we reconnect on failure. Refs: sentry #91102.
* web: fix flask/werkzeug encoding for mediawiki oauthBryan Newbold2021-07-131-1/+4
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* web: fix missing ext_ids default for deleted entity viewBryan Newbold2021-07-131-1/+1
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* web: fix 'file' entity edit form linksBryan Newbold2021-07-021-1/+1
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* web: missing trailing parensBryan Newbold2021-07-021-1/+1
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* web: PMCID external link improvementBryan Newbold2021-07-022-2/+2
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* Merge branch 'bnewbold-more-doi-lower' into 'master'Martin Czygan2021-07-023-3/+8
|\ | | | | | | | | more consistent and defensive lower-casing of DOIs See merge request webgroup/fatcat!109
| * more consistent and defensive lower-casing of DOIsBryan Newbold2021-06-233-3/+8
| | | | | | | | | | | | | | After noticing more upper/lower ambiguity in production. In particular, we have some old ingest requests in sandcrawler DB, which get re-submitted/re-tried, which have capitalized DOIs in the link source id field.
* | tests: small citeproc style changes (to match Pipfile.lock update)Bryan Newbold2021-06-232-3/+4
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* | pipenv: regenerate lock fileBryan Newbold2021-06-231-26/+68
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* | pipenv: add pydantic; add surt; narrow dynaconfBryan Newbold2021-06-231-1/+3
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* datacite: more careful title string access; fixes sentry #88350Martin Czygan2021-06-114-2/+97
| | | | | Caused by a partial "title entry without title" coming *first* (e.g. just holding, e.g. a language, like: {'lang': 'da'}
* clean_doi() should lower-case returned DOIBryan Newbold2021-06-071-1/+4
| | | | | | | | | | Code in a number of places (including Pubmed importer) assumed that this was already lower-casing DOIs, resulting in some broken metadata getting created. See also: https://github.com/internetarchive/fatcat/issues/83 This is just the first step of mitigation.
* web: fix DOAJ article links (remove trailing slash)Bryan Newbold2021-06-041-1/+1
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* dblp tests: skip redundant seek(0)Bryan Newbold2021-06-031-6/+1
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* ingest: swap ingest and file checks, to result in clearer stats/counts of ↵Bryan Newbold2021-06-031-2/+2
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* ingest: don't accept mag and s2 URLsBryan Newbold2021-06-031-4/+4
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* bump fuzzycat dependency to 0.1.21Bryan Newbold2021-06-022-20/+18
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* web: fix spacing for doaj/dblp identifiers in SERPBryan Newbold2021-05-311-1/+1
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* ingest: don't 'track_total_hits' for ES 7.x count()Bryan Newbold2021-05-311-1/+1
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