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* Merge branch 'bnewbold-shadow-import'Bryan Newbold2020-02-197-2/+289
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| * remove arabesque short wayback URL hackBryan Newbold2020-02-141-6/+0
| * clarify shadow filter codeBryan Newbold2020-02-131-1/+1
| * filter out shadows-only files in webfaceBryan Newbold2020-02-132-2/+7
| * improve shadow import file url cleanup pathBryan Newbold2020-02-131-2/+12
| * shadow import fixes from QA testingBryan Newbold2020-02-132-1/+7
| * shadow import: more filtering of file_meta fieldsBryan Newbold2020-02-133-18/+28
| * basic shadow importerBryan Newbold2020-02-135-0/+262
* | always crawl researchgate DOIsBryan Newbold2020-02-181-0/+2
* | ingest import: fix edit_extra pathBryan Newbold2020-02-181-1/+1
* | ingest importer: edit_extra is a top-level keyBryan Newbold2020-02-181-1/+1
* | ingest import: allow short version of corpus namesBryan Newbold2020-02-181-0/+3
* | ingest importer: pass through link relBryan Newbold2020-02-181-1/+6
* | fatcat_ingest: as 'fatcat-ingest', not 'fatcat-ingest-container'Bryan Newbold2020-02-141-1/+1
* | harvest: log state on startup and use stderr for diagnosticsMartin Czygan2020-02-143-17/+22
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* add acceptlist override for biorxiv/medrxivBryan Newbold2020-02-101-2/+12
* check ingest_request_source existance for SPN as well as ingestBryan Newbold2020-02-061-0/+3
* additional trusted link sourcesBryan Newbold2020-02-061-0/+3
* add mag and s2 as trusted link sourcesBryan Newbold2020-02-061-1/+1
* ingest worker: handle missing ingest_request_sourceBryan Newbold2020-02-061-0/+3
* switch '!= None' to 'is not None'Bryan Newbold2020-02-041-3/+3
* allow-non-oa is a top-level flag, not sub-commandBryan Newbold2020-02-041-3/+0
* default to PMC ingest URLs over DOIBryan Newbold2020-02-041-4/+4
* ingest: add 'extid' and 'query' modes; filters; refactorBryan Newbold2020-02-041-38/+147
* datacite: prevent noneMartin Czygan2020-01-311-1/+1
* datacite: name shall not be NoneMartin Czygan2020-01-311-1/+1
* datacite: add exception for https://www.micropublication.org/Martin Czygan2020-01-312-1/+7
* datacite: do not skip records w/o dateMartin Czygan2020-01-311-2/+1
* datacite: improve docstringMartin Czygan2020-01-311-4/+4
* datacite: improve date handling and minor tweakMartin Czygan2020-01-304-21/+153
* fix KafkaError worker reporting for partition errorsBryan Newbold2020-01-293-3/+3
* additional DOI prefix filtersBryan Newbold2020-01-281-0/+8
* increase kafka-pixy timeout to 25 secondsBryan Newbold2020-01-281-1/+1
* apply ingest request filtering in entity workerBryan Newbold2020-01-281-3/+34
* remove 'oa_only' feature from ingest transformBryan Newbold2020-01-282-15/+1
* refactor fatcat_import kafka group namesBryan Newbold2020-01-211-13/+54
* fix trivial typo in file importerBryan Newbold2020-01-201-1/+1
* normal: DOI corner-case from pubmed importBryan Newbold2020-01-191-0/+9
* Merge branch 'martin-fix-container-search' into 'master'Martin Czygan2020-01-182-6/+6
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| * pagination: use correct endpoint in navigationMartin Czygan2020-01-182-6/+6
* | fix trivial one-character typo in fatcat_import.pyBryan Newbold2020-01-171-1/+1
* | actually control pubmed updates with a flagBryan Newbold2020-01-171-0/+4
* | do not normalize "en dash" in DOIMartin Czygan2020-01-172-3/+6
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* ingest: improve tests, support old ingest resultsBryan Newbold2020-01-154-4/+30
* update ingest worker for schema tweaksBryan Newbold2020-01-151-8/+15
* ingest: allow more sources to auto-importBryan Newbold2020-01-151-1/+2
* datacite: skip records without a doiMartin Czygan2020-01-131-0/+4
* add missing sentry/raven tagsBryan Newbold2020-01-103-2/+19
* datacite: add entry to license slug mapMartin Czygan2020-01-092-0/+2
* datacite: ignore known unknown values in resourceType*Martin Czygan2020-01-094-3/+97
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