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* cleanups: initial lowercase DOI cleanup scriptBryan Newbold2021-11-091-0/+145
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* wayback short ts: another regression test, and some small fmt/tweaksBryan Newbold2021-11-091-3/+38
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* wayback cleanup: actually update entityBryan Newbold2021-11-091-2/+4
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* imports: generic file cleanup removes exact duplicate URLsBryan Newbold2021-11-091-0/+9
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* wayback short ts: add regression test for dupe URLsBryan Newbold2021-11-091-0/+44
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* short wayback ts: initial cleanup script implementationBryan Newbold2021-11-091-0/+251
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* python tests: verify array sort orderBryan Newbold2021-11-054-20/+18
| | | | | | | In a couple cases (eg, filesets), had made tests agnostic to sort order, because the sort order was not stable. In other cases, simply small cleanups and comment improvements.
* enable type annotation checking with flake8 by default ('make lint')Bryan Newbold2021-11-031-4/+2
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* cleanups: create a separate JsonLinePusher for cleanup workers (distinct ↵Bryan Newbold2021-11-033-4/+20
| | | | base class)
* facat_import.py: work around corner case in run_cdl_dash_dat()Bryan Newbold2021-11-031-1/+1
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* datacite importer: remove unused 'year_only' variableBryan Newbold2021-11-031-2/+3
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* web: work around remaining type annotation issuesBryan Newbold2021-11-032-11/+15
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* ignore type errors in cors.py (third party code)Bryan Newbold2021-11-031-2/+2
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* web: fix bytes/text warning loggingBryan Newbold2021-11-031-3/+3
| | | | Minor issue. Caught by type checking
* lint: remove unused importBryan Newbold2021-11-031-1/+0
| | | | This was caught by new linting, I think not caused by any recent changes
* web config: add helper for coercing env vars into booleansBryan Newbold2021-11-031-3/+32
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* web: add type annotationsBryan Newbold2021-11-0312-297/+347
| | | | | This commit does not include type fixes, only annotations. A small number of tuples were also converted to lists.
* introduce 'AnyResponse' type for Flask viewsBryan Newbold2021-11-032-0/+15
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* pubmed harvester: remove unused variablesBryan Newbold2021-11-031-2/+2
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* pubmed harvester: explicit assertions to mark unreachable code pathsBryan Newbold2021-11-031-0/+2
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* typing: add assertions to fatcat_tool code to make type assumptions explicitBryan Newbold2021-11-033-0/+3
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* typing: add annotations to remaining fatcat_tools codeBryan Newbold2021-11-039-122/+186
| | | | | Again, these are just annotations, no changes made to get type checks to pass
* datacite: add comment about potential date parsing bugBryan Newbold2021-11-031-0/+1
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* datacite importer: dateparser.date.DateDataParser()Bryan Newbold2021-11-031-1/+1
| | | | Perhaps this was a change when upgrading 'dateparser'?
* more involved type wrangling and fixes for importersBryan Newbold2021-11-033-12/+14
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* typing: relatively simple type check fixesBryan Newbold2021-11-0314-87/+82
| | | | | | | These mostly add new variable names so that existing variables aren't overwritten with a new type; delay coercing '{}' or '[]' to 'None' until the last minute; adding is-not-None checks to conditional clauses; and similar small changes.
* typing: initial annotations on importersBryan Newbold2021-11-0322-274/+443
| | | | | This commit just adds the type annotations, doesn't do fixes to code to make type checking pass.
* typing: first batch of python bulk type annotationsBryan Newbold2021-11-0321-139/+200
| | | | | | While these changes are more delicate than simple lint changes, this specific batch of edits and annotations was *relatively* simple, and resulted in few code changes other than function signature additions.
* importers: remove unused __main__ routineBryan Newbold2021-11-034-19/+0
| | | | | | These perhaps were used in initial develoment or testing? fatcat_import.py is the correct way to do these imports, even for testing/development.
* lint: resolve existing mypy type errorsBryan Newbold2021-11-0212-81/+125
| | | | | | | | | Adds annotations and re-workes dataflow to satisfy existing mypy issues, without adding any additional type annotations to, eg, function signatures. There will probably be many more type errors when annotations are all added.
* web: annotate 'app' as 'Any', and document whyBryan Newbold2021-11-021-1/+5
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* flake8 config: update ignore list after big fmtBryan Newbold2021-11-021-3/+4
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* re-fix some lint issues after big 'fmt'Bryan Newbold2021-11-022-4/+5
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* fmt (black): fatcat_tools/Bryan Newbold2021-11-0243-3194/+4020
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* fmt (black): fatcat_web/Bryan Newbold2021-11-0213-1297/+1992
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* fmt (black): *.pyBryan Newbold2021-11-0211-715/+1110
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* fmt (black): tests/Bryan Newbold2021-11-0255-1430/+1852
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* python: isort everythingBryan Newbold2021-11-0285-184/+278
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* revert '-vv' for pytest in Makefile (too verbose)Bryan Newbold2021-11-021-1/+1
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* arabesque import 'hit' field is 1/0, not true/falseBryan Newbold2021-11-021-2/+2
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* lint: simple, safe inline lint fixesBryan Newbold2021-11-0239-221/+220
| | | | '==' vs 'is'; 'not a in b' vs 'a not in b'; etc
* lint/fmt: remove all 'import *'Bryan Newbold2021-11-0212-62/+207
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* entity transforms: add basic type annotationsBryan Newbold2021-11-021-7/+19
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* ftfy 'fix_entities' argument has been renamedBryan Newbold2021-11-021-4/+4
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* hacks to work around new pylint false positivesBryan Newbold2021-11-022-11/+18
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* cleanup imports after fatcat_tools.transforms changeBryan Newbold2021-11-027-34/+76
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* re-fmt all the fatcat_tools __init__ files for readabilityBryan Newbold2021-11-025-30/+62
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* remove 'import *' from fatcat_tools (for transforms)Bryan Newbold2021-11-021-2/+2
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* python makefile: tooling config updatesBryan Newbold2021-11-021-12/+13
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* add pyproject.toml with isort configurationBryan Newbold2021-11-021-0/+3
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