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* oaipmh: HarvestPubmedWorker obsoleted by PubmedFTPWorkerMartin Czygan2020-03-091-34/+0
* fatcat_import: address potential hanging, if stdin is emptyMartin Czygan2020-03-091-0/+2
* more pubmed adjustmentsMartin Czygan2020-02-226-71/+197
* pubmed ftp: fix urlMartin Czygan2020-02-191-4/+6
* pubmed ftp harvest and KafkaBs4XmlPusherMartin Czygan2020-02-196-21/+307
* fatcat_ingest: as 'fatcat-ingest', not 'fatcat-ingest-container'Bryan Newbold2020-02-141-1/+1
* harvest: log state on startup and use stderr for diagnosticsMartin Czygan2020-02-143-17/+22
* add acceptlist override for biorxiv/medrxivBryan Newbold2020-02-101-2/+12
* check ingest_request_source existance for SPN as well as ingestBryan Newbold2020-02-061-0/+3
* additional trusted link sourcesBryan Newbold2020-02-061-0/+3
* add mag and s2 as trusted link sourcesBryan Newbold2020-02-061-1/+1
* ingest worker: handle missing ingest_request_sourceBryan Newbold2020-02-061-0/+3
* switch '!= None' to 'is not None'Bryan Newbold2020-02-041-3/+3
* allow-non-oa is a top-level flag, not sub-commandBryan Newbold2020-02-041-3/+0
* default to PMC ingest URLs over DOIBryan Newbold2020-02-041-4/+4
* ingest: add 'extid' and 'query' modes; filters; refactorBryan Newbold2020-02-041-38/+147
* datacite: prevent noneMartin Czygan2020-01-311-1/+1
* datacite: name shall not be NoneMartin Czygan2020-01-311-1/+1
* datacite: add exception for https://www.micropublication.org/Martin Czygan2020-01-312-1/+7
* datacite: do not skip records w/o dateMartin Czygan2020-01-311-2/+1
* datacite: improve docstringMartin Czygan2020-01-311-4/+4
* datacite: improve date handling and minor tweakMartin Czygan2020-01-304-21/+153
* fix KafkaError worker reporting for partition errorsBryan Newbold2020-01-293-3/+3
* additional DOI prefix filtersBryan Newbold2020-01-281-0/+8
* increase kafka-pixy timeout to 25 secondsBryan Newbold2020-01-281-1/+1
* apply ingest request filtering in entity workerBryan Newbold2020-01-281-3/+34
* remove 'oa_only' feature from ingest transformBryan Newbold2020-01-282-15/+1
* refactor fatcat_import kafka group namesBryan Newbold2020-01-211-13/+54
* fix trivial typo in file importerBryan Newbold2020-01-201-1/+1
* normal: DOI corner-case from pubmed importBryan Newbold2020-01-191-0/+9
* Merge branch 'martin-fix-container-search' into 'master'Martin Czygan2020-01-182-6/+6
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| * pagination: use correct endpoint in navigationMartin Czygan2020-01-182-6/+6
* | fix trivial one-character typo in fatcat_import.pyBryan Newbold2020-01-171-1/+1
* | actually control pubmed updates with a flagBryan Newbold2020-01-171-0/+4
* | do not normalize "en dash" in DOIMartin Czygan2020-01-172-3/+6
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* ingest: improve tests, support old ingest resultsBryan Newbold2020-01-154-4/+30
* update ingest worker for schema tweaksBryan Newbold2020-01-151-8/+15
* ingest: allow more sources to auto-importBryan Newbold2020-01-151-1/+2
* datacite: skip records without a doiMartin Czygan2020-01-131-0/+4
* add missing sentry/raven tagsBryan Newbold2020-01-103-2/+19
* datacite: add entry to license slug mapMartin Czygan2020-01-092-0/+2
* datacite: ignore known unknown values in resourceType*Martin Czygan2020-01-094-3/+97
* datacite: abstracts may be strings or list of stringsMartin Czygan2020-01-096-3/+202
* datacite: improve license_slug handlingMartin Czygan2020-01-094-62/+134
* datacite: add 'Unknown' to blacklistMartin Czygan2020-01-092-8/+6
* datacite: get rid of schemaVersionMartin Czygan2020-01-0918-35/+14
* update depsMartin Czygan2020-01-081-86/+69
* Merge branch 'martin-datacite-import'Martin Czygan2020-01-0864-5/+5736
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| * datacite: pass in doi into factored out methodMartin Czygan2020-01-081-2/+3
| * datacite: reformat test cases and use jq . --sort-keysMartin Czygan2020-01-0854-2299/+2301
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