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* improve datacite field mapping and importMartin Czygan2019-12-283-17/+92
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Current version succeeded to import a random sample of 100000 records (0.5%) from datacite. The --debug (write JSON to stdout) and --insert-log-file (log batch before committing to db) flags are temporary added to help debugging. Add few unit tests. Some edge cases: a) Existing keys without value requires a slightly awkward: ``` titles = attributes.get('titles', []) or [] ``` b) There can be 0, 1, or more (first one wins) titles. c) Date handling is probably not ideal. Datacite has a potentiall fine grained list of dates. The test case (tests/files/datacite_sample.jsonl) refers to https://ssl.fao.org/glis/doi/10.18730/8DYM9, which has date (main descriptor) 1986. The datacite record contains: 2017 (publicationYear, probably the year of record creation with reference system), 1978-06-03 (collected, e.g. experimental sample), 1986 ("Accepted"). The online version of the resource knows even one more date (2019-06-05 10:14:43 by WIEWS update).
* datacite: importer skeletonMartin Czygan2019-12-281-0/+25
| | | | | | * contributors, title, date, publisher, container, license Field and value analysis via https://github.com/miku/indigo.
* datacite: fix harvest testMartin Czygan2019-12-271-1/+1
| | | | | | Produced messages should match: jq '.data|length' tests/files/datacite_api.json
* datacite: add simple test and fixture for datacite api interactionMartin Czygan2019-12-272-0/+46
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* add regression test for medlinedate -> year parsingBryan Newbold2019-12-232-0/+102
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* regression test for deleted entity history viewBryan Newbold2019-12-091-0/+25
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* add basic test for crossref harvest API callBryan Newbold2019-12-062-0/+46
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* add regression test for upper-case SHA-1 form submitBryan Newbold2019-12-021-0/+10
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* ingest file result importerBryan Newbold2019-11-152-0/+59
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* test for ingest transformBryan Newbold2019-11-151-0/+57
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* add ingest request transform (and test)Bryan Newbold2019-11-151-1/+1
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* Merge branch 'martin-search-results-pagination' into 'master'Martin Czygan2019-11-151-2/+3
|\ | | | | | | | | Add basic pagination to search results See merge request webgroup/fatcat!4
| * address test issueMartin Czygan2019-11-151-2/+3
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| * adjust search test case for new wordingMartin Czygan2019-11-141-2/+2
| | | | | | | | > "Showing top " -> "Showing first "
* | fix crossref component testBryan Newbold2019-11-041-1/+1
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* commit file cleaner testsBryan Newbold2019-10-081-0/+58
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* redirect direct entity underscore linksBryan Newbold2019-10-031-0/+2
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* python webface impl token generationBryan Newbold2019-09-181-0/+8
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* skip test_crossref_importer_huge() by defaultBryan Newbold2019-09-131-0/+1
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* refactor all python source for client lib nameBryan Newbold2019-09-0526-74/+74
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* add kbart counts to container statsBryan Newbold2019-07-311-0/+1
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* complete generic entity rev viewsBryan Newbold2019-06-281-8/+46
| | | | | | Was getting 500s in production from crawlers. Also expand test coverage.
* release elasticsearch results: stage not statusBryan Newbold2019-06-131-1/+1
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* start adding some new web route testsBryan Newbold2019-06-131-0/+6
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* update tests for lookup viewsBryan Newbold2019-06-051-3/+3
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* release lookup viewBryan Newbold2019-06-051-1/+1
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* tweak JALC tests for english swaperooBryan Newbold2019-05-291-2/+2
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* faster LargeFile XML importer for PubMedBryan Newbold2019-05-291-3/+3
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* set superceded flag on 'old' arxiv releasesBryan Newbold2019-05-231-0/+3
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* count linked refs (not just raw refs) in elasticsearchBryan Newbold2019-05-221-0/+6
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* arxiv license slug shorter; fix testBryan Newbold2019-05-221-2/+2
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* more JALC importer polishBryan Newbold2019-05-211-2/+29
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* JALC bulk file importerBryan Newbold2019-05-211-0/+100
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* arxiv importer polishBryan Newbold2019-05-211-1/+2
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* JSTOR importer polishBryan Newbold2019-05-211-5/+5
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* updates to pubmed importerBryan Newbold2019-05-211-4/+45
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* tweaks to new imports/testsBryan Newbold2019-05-212-3/+3
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* initial pubmed importerBryan Newbold2019-05-211-0/+80
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* minor jalc test cleanupBryan Newbold2019-05-211-6/+1
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* missing jstor import test (and fix typo)Bryan Newbold2019-05-211-0/+77
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* initial arxivraw importer (from parser)Bryan Newbold2019-05-211-0/+96
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* initial flesh out of JALC parserBryan Newbold2019-05-211-0/+88
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* basic JALC XML DOI metadata parserBryan Newbold2019-05-211-0/+176
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* basic JSTOR XML parserBryan Newbold2019-05-211-0/+58
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* basic arxivraw XML parserBryan Newbold2019-05-211-0/+31
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* basic pubmed parserBryan Newbold2019-05-211-0/+36822
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* hide abstracts and refs in release expansionsBryan Newbold2019-05-203-0/+6
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* add release expand api testsBryan Newbold2019-05-204-9/+19
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* fix releases/release_ids in math_universe.json test fileBryan Newbold2019-05-201-1/+1
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* basic controlled vocabulary for withdrawn_stageBryan Newbold2019-05-201-1/+7
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