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* typing: first batch of python bulk type annotationsBryan Newbold2021-11-032-4/+5
| | | | | | While these changes are more delicate than simple lint changes, this specific batch of edits and annotations was *relatively* simple, and resulted in few code changes other than function signature additions.
* fmt (black): tests/Bryan Newbold2021-11-0255-1430/+1852
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* python: isort everythingBryan Newbold2021-11-0239-73/+98
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* lint: simple, safe inline lint fixesBryan Newbold2021-11-0217-125/+125
| | | | '==' vs 'is'; 'not a in b' vs 'a not in b'; etc
* lint/fmt: remove all 'import *'Bryan Newbold2021-11-021-2/+2
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* hacks to work around new pylint false positivesBryan Newbold2021-11-021-9/+15
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* cleanup imports after fatcat_tools.transforms changeBryan Newbold2021-11-024-16/+33
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* temporary hack around filesets.manifest order instabilityBryan Newbold2021-11-021-3/+4
| | | | | | May need some change in fatcatd or schema? This isn't a new issue, that part of schema has been around for a long time, just getting detected now with these tests.
* generic fileset importer class, with test coverageBryan Newbold2021-10-142-0/+60
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* web: editor username /u/<username> helperBryan Newbold2021-10-131-0/+8
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* python: additional test coverage for v0.4 changesBryan Newbold2021-10-132-2/+19
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* python: test coverage of rust schema changesBryan Newbold2021-10-134-2/+59
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* datacite: skip empty abstractsMartin Czygan2021-10-013-1/+91
| | | | | Do not add abstracts where `clean` results in the empty string - this violates a constraint: `either abstract_sha1 or content is required`
* trivial blank line lintBryan Newbold2021-09-081-1/+0
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* refs: web UI tweaks for iterated CSL schemaBryan Newbold2021-08-031-3/+7
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* refs: start the most basic/minimal web refs test coverage ('integration' level)Bryan Newbold2021-07-274-0/+1094
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* tests: small citeproc style changes (to match Pipfile.lock update)Bryan Newbold2021-06-232-3/+4
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* datacite: more careful title string access; fixes sentry #88350Martin Czygan2021-06-113-1/+96
| | | | | Caused by a partial "title entry without title" coming *first* (e.g. just holding, e.g. a language, like: {'lang': 'da'}
* dblp tests: skip redundant seek(0)Bryan Newbold2021-06-031-6/+1
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* ingest: add per-container ingest type overridesBryan Newbold2021-05-211-0/+6
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* fix arabesque sqlite3 examples to have 14-digit timestampsBryan Newbold2021-05-211-0/+0
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* make dblp tests more robustBryan Newbold2021-04-121-2/+11
| | | | | | These were causing a lot of spurious errors in local development. Not sure these tweaks will entirely fix the problem.
* transform tool: container transform stats lookup supportBryan Newbold2021-04-061-0/+1
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* search container stats: changes to be called from index code pathBryan Newbold2021-04-061-0/+10
| | | | Eg, allowing injection of more config values
* container search schema: preservation stats, new fieldsBryan Newbold2021-04-061-5/+42
| | | | Includes transform code updates and partial test coverage.
* datacite: a missing surname should be None, not the empty stringMartin Czygan2021-04-022-2/+0
| | | | refs sentry #77700
* improve dblp release importBryan Newbold2020-12-171-3/+4
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* very simple dblp container importerBryan Newbold2020-12-174-5/+77
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* basic test coverage of dblp release importerBryan Newbold2020-12-174-0/+503
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* add 'lxml' mode for large XML file import, and multi-tagsBryan Newbold2020-12-171-2/+2
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* fix sloppy is_preserved ES transfom test failureBryan Newbold2020-12-171-1/+1
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* Merge branch 'bnewbold-doaj-fuzzy' into 'master'bnewbold2020-12-183-2/+99
|\ | | | | | | | | DOAJ import fuzzy match filter See merge request webgroup/fatcat!92
| * update fuzzy helper to pass 'reason' through to import codeBryan Newbold2020-12-171-2/+2
| | | | | | | | | | The motivation for this change is to enable passing the 'reason' through to edit extra metadata, in cases where we merge or cluster releases.
| * add fuzzy match filtering to DOAJ importerBryan Newbold2020-12-161-2/+14
| | | | | | | | | | | | | | | | | | | | | | In this default configuration, any entities with a fuzzy match (even "ambiguous") will be skipped at import time, to prevent creating duplicates. This is conservative towards not creating new/duplicate entities. In the future, as we get more confidence in fuzzy match/verification, we can start to ignore AMBIGUOUS, handle EXACT as same release, and merge STRONG (and WEAK?) matches under the same work entity.
| * add fuzzy matching helper to importer base classBryan Newbold2020-12-162-0/+85
| | | | | | | | Using fuzzycat. Add basic test coverage.
* | improve release elasticsearch transform test coverageBryan Newbold2020-12-163-11/+86
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* DOAJ: remove accidentally commited 'skip' of a testBryan Newbold2020-11-201-1/+0
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* doaj: fix update code path (getattr not __dict__)Bryan Newbold2020-11-202-11/+67
| | | | Also add missing code coverage for update path (disabled by default).
* implement remainder of DOAJ article importerBryan Newbold2020-11-191-11/+6
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* initial implementation of DOAJ importerBryan Newbold2020-11-192-0/+97
| | | | Several things to finish implementing and polish.
* ingest: fix XML ingest test fileBryan Newbold2020-11-051-1/+1
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* ingest: progress on HTML ingestBryan Newbold2020-11-052-2/+44
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* ingest: tests for basic XML ingestBryan Newbold2020-11-052-0/+18
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* ingest: basic checks for ingest_typeBryan Newbold2020-11-052-1/+7
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* Merge branch 'bnewbold-202009-polish' into 'master'Martin Czygan2020-09-292-6/+6
|\ | | | | | | | | fatcat.wiki 2020-09 polish See merge request webgroup/fatcat!84
| * lint cleanupsBryan Newbold2020-09-171-2/+0
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| * web: route constraints on fcids and UUIDsBryan Newbold2020-09-171-4/+6
| | | | | | | | | | | | | | | | | | | | | | Instead of accepting any string for these parameters and throwing a 400 error if not the correct type, implement better route matching at the framework level and return more 404s. This resolves several outstanding sentry exceptions. The "flask-uuid" was imported and seems to have been configured for this purpose previously, but I guess I never finished configuring it.
* | address spammy datacite titlesMartin Czygan2020-09-231-0/+6
|/ | | | | | | | | seemingly from zenodo: * https://fatcat.wiki/release/rzcpjwukobd4pj36ipla22cnoi * https://doi.org/10.5281/zenodo.4041777 About 3400 records with "FULL MOVIE" in title, currently.
* datacite: handle case of empty-string versionBryan Newbold2020-09-102-1/+2
| | | | | Includes a tiny tweak to the datacite import sample file to test this code path.
* generic file entity clean-ups as part of file_meta importerBryan Newbold2020-09-021-0/+99
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