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path: root/python/tests/import_pubmed.py
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* remove deprecated extid sqlite3 lookup table feature from importersBryan Newbold2021-11-091-2/+0
| | | | | | | | This was used during initial bulk imports, but is no longer used and could create serious metadata problems if used accidentially. In retrospect, it also made metadata provenance less transparent, and may have done more harm than good overall.
* fmt (black): tests/Bryan Newbold2021-11-021-31/+58
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* python: isort everythingBryan Newbold2021-11-021-2/+2
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* lint: simple, safe inline lint fixesBryan Newbold2021-11-021-11/+11
| | | | '==' vs 'is'; 'not a in b' vs 'a not in b'; etc
* add 'lxml' mode for large XML file import, and multi-tagsBryan Newbold2020-12-171-2/+2
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* lint (flake8) python test filesBryan Newbold2020-07-011-4/+3
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* pubmed: handle multiple ReferenceListBryan Newbold2020-03-201-0/+12
| | | | | | | This resolves a situation noticed in prod where we were only importing/updating a single reference per article. Includes a regression test.
* add regression test for medlinedate -> year parsingBryan Newbold2019-12-231-0/+7
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* faster LargeFile XML importer for PubMedBryan Newbold2019-05-291-3/+3
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* updates to pubmed importerBryan Newbold2019-05-211-4/+45
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* tweaks to new imports/testsBryan Newbold2019-05-211-2/+2
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* initial pubmed importerBryan Newbold2019-05-211-0/+80