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* ingest importer: improved extra/edit_extra code flowBryan Newbold2022-04-051-20/+13
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* fileset ingest: remove a TODOBryan Newbold2022-04-041-1/+0
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* filesets: typo bugfix, and test 'mimetype' on entity, not extraBryan Newbold2022-04-041-1/+1
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* fileset ingest: fix mimetype handlingBryan Newbold2022-03-311-4/+5
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* bugfix: logic flow in fileset release checkingBryan Newbold2022-03-231-3/+6
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* single-file variant of fileset importer for dataset attemptsBryan Newbold2022-03-232-0/+202
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* fix typo in fileset comparison helperBryan Newbold2022-03-231-1/+1
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* ingest fileset fixes, and some test coverageBryan Newbold2022-03-232-13/+30
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* dataset ingest: JSON object fixesBryan Newbold2022-03-221-5/+5
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* Merge branch 'bnewbold-container-web' into 'master'bnewbold2022-03-103-2/+185
|\ | | | | | | | | container web interface improvements See merge request webgroup/fatcat!140
| * move container_status ES query code from fatcat_web to fatcat_toolsBryan Newbold2022-02-093-2/+185
| | | | | | | | | | | | The main motivation is to never have fatcat_tools import from fatcat_web, only vica-versa. Some code in fatcat_tools needs container stats, so starting with that code path (plus some generic helpers).
* | entity updates: don't try to ingest arxiv DOIs (for now)Bryan Newbold2022-02-281-0/+2
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* | datacite importer: skip container_id for some repository sourcesBryan Newbold2022-02-091-0/+34
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* doaj importer: TODO note to skip some larger publishersBryan Newbold2022-02-091-0/+4
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* container ES transform: include old extra.issne/p fieldsBryan Newbold2022-02-031-1/+4
| | | | | These were removed prematurely. Not all containers have been updated to use these fields yet.
* Merge branch 'bnewbold-file-es' into 'master'bnewbold2022-01-213-4/+38
|\ | | | | | | | | File entity elasticsearch index worker See merge request webgroup/fatcat!136
| * entity worker: expand creators in release entitiesBryan Newbold2021-12-151-1/+1
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| * small default config typo fixes for elasticsearch workersBryan Newbold2021-12-151-2/+2
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| * file elasticsearch index workerBryan Newbold2021-12-152-1/+35
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* | crossref importer: skip affiliations lacking 'name'Bryan Newbold2021-12-151-0/+3
|/ | | | Relatedly, we should start handling ROR affiliations in contribs soon.
* mergers: fix typo in env var nameBryan Newbold2021-12-073-3/+3
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* ES container schema: add 'sim_pubid' and `ia_sim_collection` fieldsBryan Newbold2021-12-031-0/+2
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* ES transform: remove prototype microfilm linksBryan Newbold2021-12-031-20/+0
| | | | This ended up being a feature in scholar.archive.org, not fatcat.
* chocula importer: handle not-upper-case ISSNsBryan Newbold2021-11-301-2/+6
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* chocula importer: handle broken ISSNs in extra metadataBryan Newbold2021-11-301-2/+7
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* chocula importer: tweak counting, conditions for doing updatesBryan Newbold2021-11-301-15/+7
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* chocula importer: move issne/issnp 'extra' to top-level fields if doing updatesBryan Newbold2021-11-301-0/+6
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* chocula: don't do name cleanups in importerBryan Newbold2021-11-301-8/+2
| | | | This kind of cleanup should be done in 'chocula' instead.
* container merger: fix bug with filtering by release countBryan Newbold2021-11-301-13/+15
| | | | | Also apply the "human edit" and "release count" checks only to the dupe (to-be-redirected) idents.
* release merger: same editgroup_id fixes as for file and container mergersBryan Newbold2021-11-241-1/+5
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* container merger: fixes from QA testingBryan Newbold2021-11-241-8/+13
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* mergers: don't try to accept empty editgroups in dry-run-modeBryan Newbold2021-11-241-2/+4
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* ES release transform: handle redirected containers betterBryan Newbold2021-11-241-1/+1
| | | | | Despite the inline comment, we were not actually grabbing the "redirected" ident correctly, meaning some counts would not be accurate.
* container merger: defer allocation of editgroup_id; and dummy code pathBryan Newbold2021-11-241-1/+5
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* initial implementation of container mergerBryan Newbold2021-11-241-0/+237
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* file merger: allocate editgroup id later in 'merge' processBryan Newbold2021-11-241-1/+5
| | | | | The motivation is to avoid creating empty editgroups in dry-run mode, and when all entities are "skipped"
* Merge branch 'bnewbold-mergers' into 'master'bnewbold2021-11-254-0/+640
|\ | | | | | | | | entity mergers framework See merge request webgroup/fatcat!133
| * mergers common: remove inaccurate commentBryan Newbold2021-11-241-2/+0
| | | | | | | | Caught in review, thanks miku
| * file merger: add content_scope to list of merged fieldsBryan Newbold2021-11-241-1/+1
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| * release merger: some progress, but also disable (not complete)Bryan Newbold2021-11-231-12/+72
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| * file merges: fixes from testing in QABryan Newbold2021-11-231-14/+23
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| * mergers: small tweaksBryan Newbold2021-11-232-3/+3
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| * mergers: remove entity mergers from __init__ (to work around warning)Bryan Newbold2021-11-231-2/+0
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| * initial file merger, with testsBryan Newbold2021-11-231-0/+228
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| * mergers: fmt, lint, refactorsBryan Newbold2021-11-233-96/+200
| | | | | | | | | | These old merger code is from an old branch and needed significant cleanup
| * first iteration of mergersBryan Newbold2021-11-233-0/+243
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* | codespell fixes in python code (comments)Bryan Newbold2021-11-242-3/+3
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* content_scope: include in file ES schema and transformBryan Newbold2021-11-171-0/+1
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* Merge branch 'bnewbold-import-refactors' into 'master'bnewbold2021-11-1118-1462/+811
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | import refactors and deprecations Some of these are from old stale branches (the datacite subject metadata patch), but most are from yesterday and today. Sort of a hodge-podge, but the general theme is getting around to deferred cleanups and refactors specific to importer code before making some behavioral changes. The Datacite-specific stuff could use review here. Remove unused/deprecated/dead code: - cdl_dash_dat and wayback_static importers, which were for specific early example entities and have been superseded by other importers - "extid map" sqlite3 feature from several importers, was only used for initial bulk imports (and maybe should not have been used) Refactors: - moved a number of large datastructures out of importer code and into a dedicated static file (`biblio_lookup_tables.py`). Didn't move all, just the ones that were either generic or very large (making it hard to read code) - shuffled around relative imports and some function names ("clean_str" vs. "clean") Some actual behavioral changes: - remove some Datacite-specific license slugs - stop trying to fix double-slashes in DOIs, that was causing more harm than help (some DOIs do actually have double-slashes!) - remove some excess metadata from datacite 'extra' fields
| * improve lookup_license_slug helper and lookup tableBryan Newbold2021-11-102-56/+62
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