| Commit message (Collapse) | Author | Age | Files | Lines | |
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| * | Merge branch 'bnewbold-file-es' into 'master' | bnewbold | 2022-01-21 | 3 | -4/+38 |
| |\ | | | | | | | | | File entity elasticsearch index worker See merge request webgroup/fatcat!136 | ||||
| | * | entity worker: expand creators in release entities | Bryan Newbold | 2021-12-15 | 1 | -1/+1 |
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| | * | small default config typo fixes for elasticsearch workers | Bryan Newbold | 2021-12-15 | 1 | -2/+2 |
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| | * | file elasticsearch index worker | Bryan Newbold | 2021-12-15 | 2 | -1/+35 |
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| * | | crossref importer: skip affiliations lacking 'name' | Bryan Newbold | 2021-12-15 | 1 | -0/+3 |
| |/ | | | | Relatedly, we should start handling ROR affiliations in contribs soon. | ||||
| * | mergers: fix typo in env var name | Bryan Newbold | 2021-12-07 | 3 | -3/+3 |
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| * | ES container schema: add 'sim_pubid' and `ia_sim_collection` fields | Bryan Newbold | 2021-12-03 | 1 | -0/+2 |
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| * | ES transform: remove prototype microfilm links | Bryan Newbold | 2021-12-03 | 1 | -20/+0 |
| | | | | | This ended up being a feature in scholar.archive.org, not fatcat. | ||||
| * | chocula importer: handle not-upper-case ISSNs | Bryan Newbold | 2021-11-30 | 1 | -2/+6 |
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| * | chocula importer: handle broken ISSNs in extra metadata | Bryan Newbold | 2021-11-30 | 1 | -2/+7 |
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| * | chocula importer: tweak counting, conditions for doing updates | Bryan Newbold | 2021-11-30 | 1 | -15/+7 |
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| * | chocula importer: move issne/issnp 'extra' to top-level fields if doing updates | Bryan Newbold | 2021-11-30 | 1 | -0/+6 |
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| * | chocula: don't do name cleanups in importer | Bryan Newbold | 2021-11-30 | 1 | -8/+2 |
| | | | | | This kind of cleanup should be done in 'chocula' instead. | ||||
| * | container merger: fix bug with filtering by release count | Bryan Newbold | 2021-11-30 | 1 | -13/+15 |
| | | | | | | Also apply the "human edit" and "release count" checks only to the dupe (to-be-redirected) idents. | ||||
| * | release merger: same editgroup_id fixes as for file and container mergers | Bryan Newbold | 2021-11-24 | 1 | -1/+5 |
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| * | container merger: fixes from QA testing | Bryan Newbold | 2021-11-24 | 1 | -8/+13 |
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| * | mergers: don't try to accept empty editgroups in dry-run-mode | Bryan Newbold | 2021-11-24 | 1 | -2/+4 |
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| * | ES release transform: handle redirected containers better | Bryan Newbold | 2021-11-24 | 1 | -1/+1 |
| | | | | | | Despite the inline comment, we were not actually grabbing the "redirected" ident correctly, meaning some counts would not be accurate. | ||||
| * | container merger: defer allocation of editgroup_id; and dummy code path | Bryan Newbold | 2021-11-24 | 1 | -1/+5 |
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| * | initial implementation of container merger | Bryan Newbold | 2021-11-24 | 1 | -0/+237 |
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| * | file merger: allocate editgroup id later in 'merge' process | Bryan Newbold | 2021-11-24 | 1 | -1/+5 |
| | | | | | | The motivation is to avoid creating empty editgroups in dry-run mode, and when all entities are "skipped" | ||||
| * | Merge branch 'bnewbold-mergers' into 'master' | bnewbold | 2021-11-25 | 4 | -0/+640 |
| |\ | | | | | | | | | entity mergers framework See merge request webgroup/fatcat!133 | ||||
| | * | mergers common: remove inaccurate comment | Bryan Newbold | 2021-11-24 | 1 | -2/+0 |
| | | | | | | | | | Caught in review, thanks miku | ||||
| | * | file merger: add content_scope to list of merged fields | Bryan Newbold | 2021-11-24 | 1 | -1/+1 |
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| | * | release merger: some progress, but also disable (not complete) | Bryan Newbold | 2021-11-23 | 1 | -12/+72 |
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| | * | file merges: fixes from testing in QA | Bryan Newbold | 2021-11-23 | 1 | -14/+23 |
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| | * | mergers: small tweaks | Bryan Newbold | 2021-11-23 | 2 | -3/+3 |
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| | * | mergers: remove entity mergers from __init__ (to work around warning) | Bryan Newbold | 2021-11-23 | 1 | -2/+0 |
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| | * | initial file merger, with tests | Bryan Newbold | 2021-11-23 | 1 | -0/+228 |
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| | * | mergers: fmt, lint, refactors | Bryan Newbold | 2021-11-23 | 3 | -96/+200 |
| | | | | | | | | | | | These old merger code is from an old branch and needed significant cleanup | ||||
| | * | first iteration of mergers | Bryan Newbold | 2021-11-23 | 3 | -0/+243 |
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| * | | codespell fixes in python code (comments) | Bryan Newbold | 2021-11-24 | 2 | -3/+3 |
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| * | content_scope: include in file ES schema and transform | Bryan Newbold | 2021-11-17 | 1 | -0/+1 |
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| * | Merge branch 'bnewbold-import-refactors' into 'master' | bnewbold | 2021-11-11 | 18 | -1462/+811 |
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | import refactors and deprecations Some of these are from old stale branches (the datacite subject metadata patch), but most are from yesterday and today. Sort of a hodge-podge, but the general theme is getting around to deferred cleanups and refactors specific to importer code before making some behavioral changes. The Datacite-specific stuff could use review here. Remove unused/deprecated/dead code: - cdl_dash_dat and wayback_static importers, which were for specific early example entities and have been superseded by other importers - "extid map" sqlite3 feature from several importers, was only used for initial bulk imports (and maybe should not have been used) Refactors: - moved a number of large datastructures out of importer code and into a dedicated static file (`biblio_lookup_tables.py`). Didn't move all, just the ones that were either generic or very large (making it hard to read code) - shuffled around relative imports and some function names ("clean_str" vs. "clean") Some actual behavioral changes: - remove some Datacite-specific license slugs - stop trying to fix double-slashes in DOIs, that was causing more harm than help (some DOIs do actually have double-slashes!) - remove some excess metadata from datacite 'extra' fields | ||||
| | * | improve lookup_license_slug helper and lookup table | Bryan Newbold | 2021-11-10 | 2 | -56/+62 |
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| | * | refactor importer metadata tables into separate file; move some helpers around | Bryan Newbold | 2021-11-10 | 10 | -702/+682 |
| | | | | | | | | | | | | | | | - MAX_ABSTRACT_LENGTH set in a single place (importer common) - merge datacite license slug table in to common table, removing some TDM-specific licenses (which do not apply in the context of preserving the full work) | ||||
| | * | importers: refactor imports of clean() and other normalization helpers | Bryan Newbold | 2021-11-10 | 12 | -95/+104 |
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| | * | remove cdl_dash_dat and wayback_static importers | Bryan Newbold | 2021-11-10 | 3 | -510/+0 |
| | | | | | | | | | | | | | | | | | Cleaning out dead code. These importers were used to create demonstration fileset and webcapture entities early in development. They have been replaced by the fileset and webcapture ingest importers. | ||||
| | * | datacite import: store less subject metadata | Bryan Newbold | 2021-11-10 | 1 | -1/+7 |
| | | | | | | | | | | | | | | | | | Many of these 'subject' objects have the equivalent of several lines of text, with complex URLs that don't compress well. I think it is fine we have included these thus far instead of parsing more deeply, but going forward I don't think this nested 'extra' metadata is worth the database space. | ||||
| | * | importers: use clean_doi() in many more (all?) importers | Bryan Newbold | 2021-11-09 | 6 | -12/+29 |
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| | * | clean_doi: stop mutating double-slash DOIs, except for 10.1037 prefix | Bryan Newbold | 2021-11-09 | 1 | -1/+2 |
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| | * | remove deprecated extid sqlite3 lookup table feature from importers | Bryan Newbold | 2021-11-09 | 3 | -160/+0 |
| | | | | | | | | | | | | | | | | | This was used during initial bulk imports, but is no longer used and could create serious metadata problems if used accidentially. In retrospect, it also made metadata provenance less transparent, and may have done more harm than good overall. | ||||
| * | | Merge branch 'bnewbold-cleanups-nov2021' into 'master' | bnewbold | 2021-11-11 | 4 | -0/+748 |
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fatcat metadata cleanups/fixups, November 2021 Three cleanups implemented in this branch: - update non-lowercase DOIs on releases (couple hundred thousand entities) - fix incorrectly imported file/release pairs, on the file entity side (~250k entities) - expand truncated wayback URL timestamps in file entities (up to 10 million entities) Instead of proposals, there are documents for each cleanup in `notes/cleanups/`. Have done spot testing of tens of thousands of entities each in QA, and confident about running in production. Plan is to run updates in the order above. DOI and bugfix updates will go fairly fast; the wayback timestamp updates will go slower, and result in large re-indexing load both in fatcat and scholar, because both release and work entities will get triggered for update when file entities are updated. | ||||
| | * | | file/release bugfix: handle files with multiple edits | Bryan Newbold | 2021-11-09 | 1 | -6/+6 |
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| | * | | cleanups: add more state=active checks | Bryan Newbold | 2021-11-09 | 2 | -0/+8 |
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| | * | | update link source filters in file/release bugfix | Bryan Newbold | 2021-11-09 | 1 | -2/+8 |
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| | * | | initial file/release bugfix cleanup worker and notes | Bryan Newbold | 2021-11-09 | 1 | -0/+231 |
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| | * | | updates to lowercase DOI cleanup | Bryan Newbold | 2021-11-09 | 1 | -7/+15 |
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| | * | | lowercase DOI lint and check entity status | Bryan Newbold | 2021-11-09 | 1 | -4/+5 |
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| | * | | more iteration on short wayback timestamp cleanup | Bryan Newbold | 2021-11-09 | 1 | -1/+1 |
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